CmoCh04G025620 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGGTTCGTGAAATTCAGAGCTTCGAGAGATCGAAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGTATTATACTCATCCCCTTCGATTGATTCTTCTCTTTCCCTTTTATCTCTTCTGTTTTCTTTCACTAATGATGAATCGACTGCCCTCAATTGTTTGTTTTTCAGTAAATTTTTATTAAATTAGAAGTTTGGGGAATTAGGGTTTTGTTATTGTTCGAGTTTCTTGATGGATTTCTCTTGAAATTTGCTTACACTCATTATGGCGACATCTTAGTTTCTTCCGATTAGAAATTACCCCTTTATGGGAATGGTTTCAGTGTAATTTATTTTTGGGAATGGAGTGGCATGAACTTGGAGGATGTTCCCTATTATCCATGCCAATGTACCATTATGAATGTGTTTCTTCCCAATTGAACCTCCATAGATTACAATATCAAGGCCCAAGTCTGCTAGTTATTGATTCTTAAACAAATATGGTCCATTTTTTGGATTTTTTTGGTACTGACGGGTTTCTTGGAGCTACATTTTCTCATTTAGTGGTTGGTACTGATATTCTAAGTGGAGACCTTGTTTTTTTAACAAACCCCTGTTGCAATGCCCTGTAGGTTGTGACACACTCGTCTACATGATGTTGAATATGATCAATAACTGACCTGTTGACTCTTGTATTGCATTTCTAGTTTTGAGATGACATAGTGAATGGAAAATTTTCAAGCTTTGAAATGTTTCTTCATTTCTATTATCGATTTCTGGCTCTCTTGCTTTGCAGGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGGTATGATCATTTTCTCGCTCCCACCCCCGATAAAATAGGAGAATTATTCATAGGAAATAGAGTTTGCGAGTCTTGCATGAGGAATGTTTGTGAAAATCTTGGTATTTACTCGAAGCATTCAGTTTCGTGCTATAAAATAGATACATACCACGCACAAGAGTCCATTCCATAAACACTTAATTCACTAACAAGTGGAAGATAGGTTTGAATACTCTTAAATTGGTATCATTTTCAAGTAAATCAGGTGGGCTTTTAGACGTGAACACTGGCTTACTAGTGAAGTATTGTGTTTCTAAAGGACAGAAAATACAAATAGCTCAAAAGTTTGAAGTTTCAAACTAAAGGAAAGGAAGAAAAGTATACCCTGGGTCCCTCAAGCTTGAGTCTATATCCGTACTTGTTATGTTAAGTTGAGTATGATATCTCTTGTATGTACCTCAATGGAGATTTGGTATATTTATTGATTTTCTTTTCCAGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAAGTTTTGCATTGGAAGTTCGCTTGTGTTCATCCTTAATGGGAAGTTCTTATTCATCTCTCTACTTGATTTACTGAAGCTGAAAAGTTTGAAGATCCAAAATTTAGAAACATCAAGTACTTGACCTCGTTTATAGACTAGCTCCTTCATTAGTTGATATGCATGTTGTATTTTGTTATGTTAGGACAGACAACTTGTTAGTTGCTTTTGATATATTTGAGTCTTTAACCGTAGTTTTTGATATTGTCATTGGCTGCATTATTTGAATGGCTTTAGGTTTTACATGTAAGGCCAAGTAAGGACAACTCGACATTATGCATCTAAGCCAGAGTTGTTATGAAGCATCGCTTGTTTTGTTTTTGAAAAATATGTTTTCATCCTTCCTTACTGAAATGCTTGTACTCGTACGTTGCGTTGTTGAAGTCTTTGTTTTTATAATTAGTTGAAAGGGTCTTATGTATTTGTGAATGAGTATCATGAAAGGGTCTTATGTATTTGTGAATGAGTATCATGAATCGATCTATCGTGTTGCTAACTTACCCCAATGTAGCTTTGGAA ATTTGGTTCGTGAAATTCAGAGCTTCGAGAGATCGAAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAAGTTTTGCATTGGAAGTTCGCTTGTGTTCATCCTTAATGGGAAGTTCTTATTCATCTCTCTACTTGATTTACTGAAGCTGAAAAGTTTGAAGATCCAAAATTTAGAAACATCAAGTACTTGACCTCGTTTATAGACTAGCTCCTTCATTAGTTGATATGCATGTTGTATTTTGTTATGTTAGGACAGACAACTTGTTAGTTGCTTTTGATATATTTGAGTCTTTAACCGTAGTTTTTGATATTGTCATTGGCTGCATTATTTGAATGGCTTTAGGTTTTACATGTAAGGCCAAGTAAGGACAACTCGACATTATGCATCTAAGCCAGAGTTGTTATGAAGCATCGCTTGTTTTGTTTTTGAAAAATATGTTTTCATCCTTCCTTACTGAAATGCTTGTACTCGTACGTTGCGTTGTTGAAGTCTTTGTTTTTATAATTAGTTGAAAGGGTCTTATGTATTTGTGAATGAGTATCATGAAAGGGTCTTATGTATTTGTGAATGAGTATCATGAATCGATCTATCGTGTTGCTAACTTACCCCAATGTAGCTTTGGAA ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA
BLAST of CmoCh04G025620 vs. Swiss-Prot
Match: LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42 Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. Swiss-Prot
Match: LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.8e-42 Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 1
BLAST of CmoCh04G025620 vs. Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2) HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36 Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1
BLAST of CmoCh04G025620 vs. Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3) HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36 Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1
BLAST of CmoCh04G025620 vs. Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2) HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36 Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TrEMBL
Match: A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 1.6e-44 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TrEMBL
Match: A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 4.7e-44 Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TrEMBL
Match: A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.0e-44 Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TrEMBL
Match: A0A0B2SAJ4_GLYSO (U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja GN=glysoja_030105 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.8e-43 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TrEMBL
Match: A0A0L9VK45_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g131300 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.8e-43 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 173.3 bits (438), Expect = 7.2e-44 Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43 Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07 Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 1
BLAST of CmoCh04G025620 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07 Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 1
BLAST of CmoCh04G025620 vs. NCBI nr
Match: gi|659081800|ref|XP_008441520.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo]) HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1
BLAST of CmoCh04G025620 vs. NCBI nr
Match: gi|728848891|gb|KHG28334.1| (U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum]) HSP 1 Score: 184.9 bits (468), Expect = 6.8e-44 Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of CmoCh04G025620 vs. NCBI nr
Match: gi|802578114|ref|XP_012069360.1| (PREDICTED: sm-like protein LSM3A [Jatropha curcas]) HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43 Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. NCBI nr
Match: gi|720015745|ref|XP_010260936.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera]) HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1
BLAST of CmoCh04G025620 vs. NCBI nr
Match: gi|351722343|ref|NP_001235961.1| (uncharacterized protein LOC100499782 [Glycine max]) HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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