Csa6G057110 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G057110
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U6 snRNA-associated Sm-like protein LSm3; contains IPR010920 (Like-Sm (LSM) domain)
Location	Chr6 : 4448186 .. 4450229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGAATTGGGGTTGGCATTTTGTTTTGGGGATCGGAAAACTCATAAACCCCAACTCGTCAGTTTGCGATTTCAGAGCTTCCAACACCACCAAAAATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCAAATTACTTCTCTCTTTATCCCTTTATCATCTTTCTTTCTTTTCTCTAATTATTATGTCTCTCTCTATCTCTCTGTCCTCTTTAATTGACAACCCCCCAATTGTTATTGTTTTTTCTTTCGATCAAATTAATGTCTTGGAGAATTAGGGTTTTGTAATTGTTTGACTTTCTTGACGGGGTTCCCTTGAAATTTCATTTTGTTGAAAAAGGCGATACTTTAGCTTCTTCCAGTAAGTAATTAACCTTTCTTCTATTCAGTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGTAAATCTTACCATTGGAGAATAAGTAGGAAGATGACTATTTTAGCATGGTCATTATCTACATAGATGTTCTCCGTTGTGAATGTGTTTAACAGAGGCTCCAAATATTACAAATATTTAACGAAAATGGTCAATTGTTTTAGATTAAGATGTTGATTATGATTAGTAGCTGATCACTCTGTTGCATTTCTTTTAGTTTTGAGATGCTATTGTGAATACAAAATGTTTAGCTTTTCATTTTTTTATATCATTGATTGCCGAGATTTTCCTTTCCTGGAGTTTTAACTGCATTCTGTTGCTGGCTATCATGTTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGGTATGCTTGTTTTCTTCATTAGGGTTGCTTGTAACTTTGTACCACTCTTGGTTTTTAATTCGAATGTAGTAGAGTTAAATAATTTACCTATGAGAACAGTTCAAGTGCATACTAGTTGGTCAGAACGTCACGGATTAAAAAAACGTGTCTTTGTATTTAACTCCATTTCCATGCTATGAAACAACTATGTACCACATACTAGAGTCCATTCCATATGAACTCAATTTATAACCATGGCTAGAAAACAAAACTACAGTGCAGAAGATATTTGAATGCTCTCTTATTTTCAATTAAATCAGGTGAAGTTCAAAACCAAAAGAACAAAAGAAAAGAAAATCCCTGTCCCTCAAGCTGCTTCATTGAGTCTATCCCATACTTCATATGCCTGATACCATATTTTCCTTGTATATACTTTAATTGAAATTTCACTTATTTGTATTTGTCTATTTTCCTTTCCAGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAGCCATCAGTTGCGTGCATCTTTAATGGGAACTTCATATTCGCCTTCTCTACCAAATTGACTGGAGTTGGAATACTGTCAAGTACTCAACGCATTCATAGACTAGGTTTATCATTTACTTTTTATGCACATGTTCTATTACATAAACTAGTTAGTTGTTTTGATATATTTGAGTGATAGCTGTAGTTTTCTGACACTTTAATTGGCTGCACAAATTTAAGGCCTTCAGATTTTGAATGCAAGGCCAAGTAAACAAAATTTGAAATTGTGCATAAGCCTCGCTTGGTTTCTTATCTGTTTTGATTTGTCTTCATTCTTATTGAAAAGCTTGTTTTGTTGGATTCTTGGACAAGTTTATTTTTACCAGATGAAATTTGGAGTATTAGTTAGTGAGTATCACGAATTGATCTCAAATGACATCTCAGAACCATTGTCATTGTATACAGGTTTCTGTGTGGCACAATGACATGAAATTATCATCCTTCGTATTTCTTTA

mRNA sequence

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV*

Homology

[Close]

BLAST of Csa6G057110 vs. Swiss-Prot
Match: LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-43
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. Swiss-Prot
Match: LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-37
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Csa6G057110 vs. Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-37
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Csa6G057110 vs. Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-37
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Csa6G057110 vs. TrEMBL
Match: A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Csa6G057110 vs. TrEMBL
Match: A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-44
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TrEMBL
Match: A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TrEMBL
Match: B9T2G3_RICCO (Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TrEMBL
Match: C6SWG5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G167900 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 174.1 bits (440), Expect = 4.3e-44
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 173.3 bits (438), Expect = 7.3e-44
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of Csa6G057110 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of Csa6G057110 vs. TAIR10
Match: AT5G44500.1 (AT5G44500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.8e-06
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE--SVTTVEIDDETYEEIVRTSRRTV 79
          ++ R+ V ++  R+L GK  A+D+H+N++LGD EE   +   + + +T EE  R  RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 72

Query: 80 PFLFVRGDGVI 89
            + +RG+ VI
Sbjct: 73 GLVLLRGEEVI 81

[Close]

BLAST of Csa6G057110 vs. NCBI nr
Match: gi|659081800|ref|XP_008441520.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Csa6G057110 vs. NCBI nr
Match: gi|728848891|gb|KHG28334.1| (U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-44
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. NCBI nr
Match: gi|802578114|ref|XP_012069360.1| (PREDICTED: sm-like protein LSM3A [Jatropha curcas])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. NCBI nr
Match: gi|720015745|ref|XP_010260936.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE +TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Csa6G057110 vs. NCBI nr
Match: gi|351722343|ref|NP_001235961.1| (uncharacterized protein LOC100499782 [Glycine max])

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of Csa6G057110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM3B_ARATH	7.5e-43	88.54	Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1	[more]
LSM3A_ARATH	1.3e-42	86.46	Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1	[more]
LSM3_MOUSE	8.1e-37	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2	[more]
LSM3_HUMAN	8.1e-37	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	[more]
LSM3_BOVIN	8.1e-37	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3	[more]

BLAST of Csa6G057110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8S0_CUCSA	8.7e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1	[more]
A0A0B0PV80_GOSAR	6.2e-44	96.88	U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=...	[more]
A0A067L8E8_JATCU	1.1e-43	96.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1	[more]
B9T2G3_RICCO	2.4e-43	95.83	Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1	[more]
C6SWG5_SOYBN	2.4e-43	95.83	Uncharacterized protein OS=Glycine max GN=GLYMA_16G167900 PE=2 SV=1	[more]

BLAST of Csa6G057110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76860.1	4.3e-44	88.54	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	7.3e-44	86.46	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	1.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	1.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT5G44500.1	7.8e-06	36.62	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Csa6G057110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081800\|ref\|XP_008441520.1\|	1.2e-45	100.00	PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo]	[more]
gi\|728848891\|gb\|KHG28334.1\|	8.9e-44	96.88	U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum]	[more]
gi\|802578114\|ref\|XP_012069360.1\|	1.5e-43	96.88	PREDICTED: sm-like protein LSM3A [Jatropha curcas]	[more]
gi\|720015745\|ref\|XP_010260936.1\|	2.0e-43	95.83	PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera]	[more]
gi\|351722343\|ref\|NP_001235961.1\|	3.4e-43	95.83	uncharacterized protein LOC100499782 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033962	cytoplasmic mRNA processing body assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095210	cucumber EST collection version 3.0	transcribed_cluster
CU127677	cucumber EST collection version 3.0	transcribed_cluster
CU161179	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G057110.1	Csa6G057110.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU127677	CU127677	transcribed_cluster
CU095210	CU095210	transcribed_cluster
CU161179	CU161179	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..92 score: 3.5
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..92 score: 7.1
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 11..93 score: 9.31
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 10..93 score: 5.8
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..97 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G057110	Cla013820	Watermelon (97103) v1	cuwmB470
Csa6G057110	MELO3C008344	Melon (DHL92) v3.5.1	cumeB469
Csa6G057110	ClCG08G006960	Watermelon (Charleston Gray)	cuwcgB509
Csa6G057110	Lsi08G005530	Bottle gourd (USVL1VR-Ls)	culsiB478
Csa6G057110	MELO3C008344.2	Melon (DHL92) v3.6.1	cumedB451
Csa6G057110	Cla97C08G149660	Watermelon (97103) v2	cuwmbB500
Csa6G057110	Bhi04G001366	Wax gourd	cuwgoB574
Csa6G057110	CSPI06G04950	Wild cucumber (PI 183967)	cpicuB314
Csa6G057110	Cucsa.363670	Cucumber (Gy14) v1	cgycuB511
Csa6G057110	CmaCh15G005990	Cucurbita maxima (Rimu)	cmacuB308
Csa6G057110	CmaCh04G024470	Cucurbita maxima (Rimu)	cmacuB767
Csa6G057110	CmoCh15G006050	Cucurbita moschata (Rifu)	cmocuB297
Csa6G057110	CmoCh04G025620	Cucurbita moschata (Rifu)	cmocuB760
Csa6G057110	Cp4.1LG01g21160	Cucurbita pepo (Zucchini)	cpecuB459
Csa6G057110	CsGy6G004860	Cucumber (Gy14) v2	cgybcuB282
Csa6G057110	Carg01601	Silver-seed gourd	carcuB0850
Csa6G057110	Carg15789	Silver-seed gourd	carcuB0066

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G057110	Cucurbita pepo (Zucchini)	cpecuB197