Carg15789 (gene) Silver-seed gourd

Overview
NameCarg15789
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU6 snRNA-associated Sm-like protein LSm3
LocationCucurbita_argyrosperma_scaffold_055 : 385787 .. 387238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGTATTATACTCATCCCCTTCGATTGATTCTTCTCTTTCCCTTTTATCTCTTCTGTTTTCTTTCACTAATGATGAATCGACTGCCCTCATTTGTTTGTTTTTCAGTAAATTTTTATCAAATCAGTAGTTTGGGGAATTAGGGTTTTGTTATTGTTCGGGTTTCTTGATGGATTTCTCTTGAAATTTGCTTACACTCATTATGGCGACATCTTAGTTTCTTCCGATTAGAAATTACCCCTTTATGGGAATGGAGTGGCATGAACTTAGAGGATGTTCCATATTATCCATGCCAATGTACCATTATGAATGTGTTTCTTCCCAATTGAACCTCCATAGATTACAATATCAAGGCGCAAGTCTGCTAGTTATCGATTCTTAAACAAATATGGTCCATTTTTTGGATTTTTTTGGTACTGACGGGTTTCTTGGAGCTACATTTTCTCATTTAGTGGTTGGTACTGATATTCTAAGTGGAGACCTTGTTTTTTTAACAAACCCCTGCTGCAATGCCCTGTAGGTTGTGACACACTCATCTACATGATGTTGAATATGATCAATAACTGACCTGTTGACTCTTGTATTGCATTTCTAGTTTTGAGATGACATAGTGAATGGAAAATTTTCAAGCTTTGAAATGTTTCTTCATTTCTATTATCGATTTCTGGCTCTCTTGCTTTGCAGGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGGTATGATCATTTTCTCGCTCCCACCCCCCGATAAAATAGGAGAATTATTCATAGGAAATAGAGTTTGCGAGTCTTGCACGAGGAATGTTTGTGAAATCTTGGTATTTACTCAAAGCATTCAGTTTCGTGCTATAAAATAGATACATACCACGCACAAGAGTCCATTCCATAAACACTTAATTCACTAACAAGTGGAAGATAGGTTTGAATAACTCTTAAATTGGTATCATTTTCAAGTAAATCAGGTGGGCTTTTAGACGTGAACACTGGCTTACTAGTGAAGTATTGTGTTTCTAAAGGACAGAAAATACAAATAGCTCAAAAGTTTGAAGTTCCAAACTAAAGGAAAGGAAGAAAAGTATACCCTGGGTCCCTCAAGCTTGAGTCTATATCCATACTTGTTATGTTAAGTTGAGTATGATATCTCTTGTATGTACCTCAATGGAGATTTGGTATATTTATTGATTTTCTTTTCCAGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA

mRNA sequence

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA

Coding sequence (CDS)

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Homology
[Close]
BLAST of Carg15789 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 9.1e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Carg15789 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-like protein LSM3B [Cucumis sativus] >KGN46145.1 hypothetical protein Csa_6G057110 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Carg15789 vs. NCBI nr
Match: XP_016719620.1 (PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KHG28334.1 U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. NCBI nr
Match: XP_012069360.1 (sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [Carica papaya] >KDP40389.1 hypothetical protein JCGZ_04208 [Jatropha curcas])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. NCBI nr
Match: XP_010260936.1 (PREDICTED: sm-like protein LSM3A [Nelumbo nucifera])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 173.3 bits (438), Expect = 7.2e-44
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]
BLAST of Carg15789 vs. TAIR10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]
BLAST of Carg15789 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI--VTTVEIDDETYEEIVRTSRRTV 79
          ++ R+ V ++  R+L GK  A+D+H+N++LGD EE   +   + + +T EE  R  RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 72

Query: 80 PFLFVRGDGVI 89
            + +RG+ VI
Sbjct: 73 GLVLLRGEEVI 81

[Close]
BLAST of Carg15789 vs. Swiss-Prot
Match: sp|Q9LMN4|LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. Swiss-Prot
Match: sp|Q9C6K5|LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-42
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. Swiss-Prot
Match: sp|Q32PE9|LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Carg15789 vs. Swiss-Prot
Match: sp|P62310|LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Carg15789 vs. Swiss-Prot
Match: sp|P62311|LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Carg15789 vs. TrEMBL
Match: tr|A0A1S3B4E1|A0A1S3B4E1_CUCME (sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Carg15789 vs. TrEMBL
Match: tr|A0A0A0K8S0|A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Carg15789 vs. TrEMBL
Match: tr|A0A0B0PV80|A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.7e-44
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. TrEMBL
Match: tr|A0A1U8LYI1|A0A1U8LYI1_GOSHI (sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.7e-44
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Carg15789 vs. TrEMBL
Match: tr|A0A067L8E8|A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:
BLAST of Carg15789 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133461.19.1e-45100.00sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3... [more]
XP_008441520.14.5e-4498.97PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-li... [more]
XP_016719620.11.3e-4397.92PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED:... [more]
XP_012069360.12.2e-4397.92sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [C... [more]
XP_010260936.12.9e-4396.88PREDICTED: sm-like protein LSM3A [Nelumbo nucifera][more]
BLAST of Carg15789 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21190.17.2e-4486.46Small nuclear ribonucleoprotein family protein[more]
AT1G76860.12.7e-4388.54Small nuclear ribonucleoprotein family protein[more]
AT2G47640.13.2e-0732.97Small nuclear ribonucleoprotein family protein[more]
AT3G62840.13.2e-0732.97Small nuclear ribonucleoprotein family protein[more]
AT5G44500.11.0e-0536.62Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg15789 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LMN4|LSM3A_ARATH1.3e-4286.46Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1[more]
sp|Q9C6K5|LSM3B_ARATH4.9e-4288.54Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1[more]
sp|Q32PE9|LSM3_BOVIN3.1e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3[more]
sp|P62310|LSM3_HUMAN3.1e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV... [more]
sp|P62311|LSM3_MOUSE3.1e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S... [more]
BLAST of Carg15789 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4E1|A0A1S3B4E1_CUCME3.0e-4498.97sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1[more]
tr|A0A0A0K8S0|A0A0A0K8S0_CUCSA3.0e-4498.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1[more]
tr|A0A0B0PV80|A0A0B0PV80_GOSAR8.7e-4497.92U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_... [more]
tr|A0A1U8LYI1|A0A1U8LYI1_GOSHI8.7e-4497.92sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1[more]
tr|A0A067L8E8|A0A067L8E8_JATCU1.5e-4397.92Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR034105Lsm3
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15789-RACarg15789-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..92
e-value: 1.1E-19
score: 81.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..92
e-value: 1.0E-18
score: 66.6
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 2..94
e-value: 2.1E-31
score: 109.6
NoneNo IPR availablePANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 1..96
NoneNo IPR availablePANTHERPTHR13110:SF6SM-LIKE PROTEIN LSM3A-RELATEDcoord: 1..96
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 11..92
e-value: 4.74972E-50
score: 153.921
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 11..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15789Cla013820Watermelon (97103) v1carwmB0064
Carg15789Csa6G057110Cucumber (Chinese Long) v2carcuB0066
Carg15789MELO3C008344Melon (DHL92) v3.5.1carmeB0066
Carg15789ClCG08G006960Watermelon (Charleston Gray)carwcgB0066
Carg15789CSPI06G04950Wild cucumber (PI 183967)carcpiB0070
Carg15789Cucsa.363670Cucumber (Gy14) v1carcgyB0073
Carg15789CmaCh04G024470Cucurbita maxima (Rimu)carcmaB0088
Carg15789CmaCh15G005990Cucurbita maxima (Rimu)carcmaB0087
Carg15789CmoCh04G025620Cucurbita moschata (Rifu)carcmoB0094
Carg15789CmoCh15G006050Cucurbita moschata (Rifu)carcmoB0092
Carg15789Lsi08G005530Bottle gourd (USVL1VR-Ls)carlsiB059
Carg15789Cp4.1LG13g03930Cucurbita pepo (Zucchini)carcpeB0095
Carg15789Cp4.1LG01g21160Cucurbita pepo (Zucchini)carcpeB0096
Carg15789CsGy6G004860Cucumber (Gy14) v2carcgybB0066
Carg15789MELO3C008344.2Melon (DHL92) v3.6.1carmedB0067
Carg15789CsaV3_6G005290Cucumber (Chinese Long) v3carcucB0072
Carg15789Cla97C08G149660Watermelon (97103) v2carwmbB0063
Carg15789Bhi04G001366Wax gourdcarwgoB0077
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15789Carg01601Silver-seed gourdcarcarB076
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15789Cucumber (Gy14) v2carcgybB0069
Carg15789Cucumber (Gy14) v1carcgyB0071
Carg15789Cucurbita moschata (Rifu)carcmoB0091
Carg15789Cucurbita moschata (Rifu)carcmoB0093
Carg15789Cucurbita pepo (Zucchini)carcpeB0097
Carg15789Cucumber (Chinese Long) v2carcuB0069
Carg15789Cucumber (Chinese Long) v3carcucB0073
Carg15789Cucumber (Chinese Long) v3carcucB0075
Carg15789Bottle gourd (USVL1VR-Ls)carlsiB058
Carg15789Watermelon (Charleston Gray)carwcgB0065
Carg15789Watermelon (97103) v2carwmbB0066