MELO3C008344.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008344.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Small nuclear ribonucleoprotein
Location	chr03 : 4074277 .. 4076521 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAGGAACTAAAAACAAACGTGGATCGGGTCGGGTCAATAAAGAGAATTAGGGGATCGGCGTTGGCATTTGGTTTTGGGGATCGGAAACTCATAAACCCCAACTCCTCAGTTTGCGATTTCAGAGCTTTCCAACACAACCAAAAATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCGAATTACTTCTGTCTTTATCCCTTTTTCTTTTTTCTAATTATTATGTTCTCTTTCTATCTCTCTATCCTCTTTAATTGACTACCCCCCAATTGTTATTGTTTTTTCTGTCGATTAAATTAATGCCTTGGAGAATTAGGGTTTTGTAATTGTTTGAATTTCTTGACGGGGTTCCCTAGAAATTTCATTCTGTTGAAAAAGGCGGTGTTTTAGCTTCTTCCAGTAAGTAATTAACCTTTCTTCTATTCATGTTTTGCGTTTGGGATGGGGCAGAGGCTGCTTTCGAGCTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAACGTATCGAAGTTAGAGCAGACGCGTTTCACGTAAATCTTACCTTTGGAGATCAAGTAGAAAGATGACTTTTTTAGCATGGTCATTATCTACATACATGTTCTCTATTGTGAATGTGTTTAACAGAGGCTCCAAATATTACAAATATTTAACGAATATGGTCAATTGTTTTAGATTAAGATGTTGATTATGATTAGTAGCTGATCACTCTGTTGCATTTCTTTTAGTTTTGAGATGCTATTGTGAATGCAAAATTTTTAGCTTTTCATTCCTTTTATATCATTGATTGATGAGATTTTCCTTTCCTGGAGTTTTAACTGCTTTCTGTTGCGGGCTATCAATTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGGTATGCTTGTTTTCTTCATTAGGGTTGCTTGTAACTTTGTACCATTCTTGGCGTTTAATTTGAACGTAGTAGAGTTAAATAATTGACCTATGAGAACAGTTGAAGTGCATGCTAGTTGGTCAGAACATCACGGATTAAAAAAAGACGTGTCTTGGTATTTAACTCCATTGTCATGCTATAAAAGAAATATGTACCACATACTAGAGTCCATTCCATAAGAACTTAATTTACAACCATGGCTCGAAAACTACAGCCCAGAAGATATTTGAATGCTCTCTTATTTTCAATTAAATCAGCTGAATTGACAGAAGTGAACACTGGATTACAAGTGTACATTGTGTTTTTAGAGGAAGTAGAAACCTATAGCTCAAAAGTTTGAAGTTCAATACCAAAAGAACAAAAGAAAAGAAAATCCCTGGCCCTCAAGCTGGTTCATTGAGTCTATCCCATACTTTATGTGTCTGAATCCCATATTTTCCCTGTATATACCTTAATTGAAATTTCACTTATTTGTCTATGTTCCTTTCCAGACATCCAGGCGAACGGTTCCGTTTCTCTTCGTTAGAGGAGATGGGGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAGCCATCAGTCATTTGCGTGCATCTTTAAAGGGAACTTCTTATTTGCCTTCTCTACCAAACTGACTGGAGTTGGAATACTATCAAGTACTCGACCCCATTCATAGACTAGGCTTATCATTTACTTGTTATGCACATGTTCTATTACATAAACTAGTTAGTTGTTTTGATATATTTGAGTGGTAACTATAGTTTTCTGACACTTCAATTGACTGCACAAGTTTAGGGCCTTTCGATTTTGAATGTAAGGCCAAGTAAACAAAACTTGTAATTGTGCATCTATAAGCTAAGCCTTGCTTGGTTTCTTATCCGTTTTGATTTGTCTTCATTCTTATTGAAAAGCATGTTTTGTTGGATTCTTGCACTCATTTAATTTTACTAGATGAATTTGGTGTATTTGTTAATGAATATCGCCAATTGATCTCAAATGACCTCCCAGAACTGTTGTCATGACCTTCATTGTATACTAGTTTCTTTGTGTCAGATTTGTTTCAGGCACAATGGCATGAAATTATCATCCTTTGTATTTCTTTATTCCCATCATATCTTGATTTTCCTTCCCTTGGTGAAATTACGAAATGGTATAT

mRNA sequence

AGAATAGGAACTAAAAACAAACGTGGATCGGGTCGGGTCAATAAAGAGAATTAGGGGATCGGCGTTGGCATTTGGTTTTGGGGATCGGAAACTCATAAACCCCAACTCCTCAGTTTGCGATTTCAGAGCTTTCCAACACAACCAAAAATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTCGTTAGAGGAGATGGGGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAGCCATCAGTCATTTGCGTGCATCTTTAAAGGGAACTTCTTATTTGCCTTCTCTACCAAACTGACTGGAGTTGGAATACTATCAAGTACTCGACCCCATTCATAGACTAGGCTTATCATTTACTTGTTATGCACATGTTCTATTACATAAACTAGTTAGTTGTTTTGATATATTTGAGTGGTAACTATAGTTTTCTGACACTTCAATTGACTGCACAAGTTTAGGGCCTTTCGATTTTGAATGTAAGGCCAAGTAAACAAAACTTGTAATTGTGCATCTATAAGCTAAGCCTTGCTTGGTTTCTTATCCGTTTTGATTTGTCTTCATTCTTATTGAAAAGCATGTTTTGTTGGATTCTTGCACTCATTTAATTTTACTAGATGAATTTGGTGTATTTGTTAATGAATATCGCCAATTGATCTCAAATGACCTCCCAGAACTGTTGTCATGACCTTCATTGTATACTAGTTTCTTTGTGTCAGATTTGTTTCAGGCACAATGGCATGAAATTATCATCCTTTGTATTTCTTTATTCCCATCATATCTTGATTTTCCTTCCCTTGGTGAAATTACGAAATGGTATAT

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTCGTTAGAGGAGATGGGGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Homology

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BLAST of MELO3C008344.2 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-like protein LSM3B [Cucumis sativus] >KGN46145.1 hypothetical protein Csa_6G057110 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of MELO3C008344.2 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 5.9e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of MELO3C008344.2 vs. NCBI nr
Match: XP_016719620.1 (PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KHG28334.1 U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 182.6 bits (462), Expect = 6.5e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. NCBI nr
Match: XP_012069360.1 (sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [Carica papaya] >KDP40389.1 hypothetical protein JCGZ_04208 [Jatropha curcas])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. NCBI nr
Match: XP_010260936.1 (PREDICTED: sm-like protein LSM3A [Nelumbo nucifera])

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE +TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-43
Identity = 85/96 (88.54%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43
Identity = 83/96 (86.46%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.4e-07
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of MELO3C008344.2 vs. TAIR10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.4e-07
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of MELO3C008344.2 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE--SVTTVEIDDETYEEIVRTSRRTV 79
          ++ R+ V ++  R+L GK  A+D+H+N++LGD EE   +   + + +T EE  R  RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 72

Query: 80 PFLFVRGDGVI 89
            + +RG+ VI
Sbjct: 73 GLVLLRGEEVI 81

[Close]

BLAST of MELO3C008344.2 vs. Swiss-Prot
Match: sp|Q9C6K5|LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-42
Identity = 85/96 (88.54%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. Swiss-Prot
Match: sp|Q9LMN4|LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-42
Identity = 83/96 (86.46%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. Swiss-Prot
Match: sp|Q32PE9|LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of MELO3C008344.2 vs. Swiss-Prot
Match: sp|P62310|LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of MELO3C008344.2 vs. Swiss-Prot
Match: sp|P62311|LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of MELO3C008344.2 vs. TrEMBL
Match: tr|A0A1S3B4E1|A0A1S3B4E1_CUCME (sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.9e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of MELO3C008344.2 vs. TrEMBL
Match: tr|A0A0A0K8S0|A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.9e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of MELO3C008344.2 vs. TrEMBL
Match: tr|A0A0B0PV80|A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.3e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of MELO3C008344.2 vs. TrEMBL
Match: tr|A0A1U8LYI1|A0A1U8LYI1_GOSHI (sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.3e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

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BLAST of MELO3C008344.2 vs. TrEMBL
Match: tr|A0A067L8E8|A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.4e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of MELO3C008344.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441520.1	1.2e-44	100.00	PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-li...	[more]
XP_022133461.1	5.9e-44	98.97	sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3...	[more]
XP_016719620.1	6.5e-43	96.88	PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED:...	[more]
XP_012069360.1	1.1e-42	96.88	sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [C...	[more]
XP_010260936.1	1.5e-42	95.83	PREDICTED: sm-like protein LSM3A [Nelumbo nucifera]	[more]

BLAST of MELO3C008344.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76860.1	1.6e-43	88.54	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	2.7e-43	86.46	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	5.4e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	5.4e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT5G44500.1	1.3e-05	36.62	Small nuclear ribonucleoprotein family protein	[more]

BLAST of MELO3C008344.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C6K5\|LSM3B_ARATH	2.9e-42	88.54	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
sp\|Q9LMN4\|LSM3A_ARATH	4.9e-42	86.46	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
sp\|Q32PE9\|LSM3_BOVIN	2.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
sp\|P62310\|LSM3_HUMAN	2.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
sp\|P62311\|LSM3_MOUSE	2.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of MELO3C008344.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4E1\|A0A1S3B4E1_CUCME	7.9e-45	100.00	sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1	[more]
tr\|A0A0A0K8S0\|A0A0A0K8S0_CUCSA	7.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1	[more]
tr\|A0A0B0PV80\|A0A0B0PV80_GOSAR	4.3e-43	96.88	U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_...	[more]
tr\|A0A1U8LYI1\|A0A1U8LYI1_GOSHI	4.3e-43	96.88	sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1	[more]
tr\|A0A067L8E8\|A0A067L8E8_JATCU	7.4e-43	96.88	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome
GO:0000956	nuclear-transcribed mRNA catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034105	Lsm3
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033962	cytoplasmic mRNA processing body assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008344.2.1	MELO3C008344.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..92 e-value: 7.1E-19 score: 78.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..92 e-value: 3.6E-18 score: 64.9
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 2..94 e-value: 4.4E-31 score: 108.5
None	No IPR available	PANTHER	PTHR13110:SF6	SM-LIKE PROTEIN LSM3A-RELATED	coord: 1..96
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..96
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..92 e-value: 1.21957E-50 score: 155.461
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 11..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008344.2	Csa6G057110	Cucumber (Chinese Long) v2	cumedB451
MELO3C008344.2	Cucsa.363670	Cucumber (Gy14) v1	cgymedB590
MELO3C008344.2	CmaCh15G005990	Cucurbita maxima (Rimu)	cmamedB309
MELO3C008344.2	CmaCh04G024470	Cucurbita maxima (Rimu)	cmamedB765
MELO3C008344.2	CmoCh15G006050	Cucurbita moschata (Rifu)	cmomedB295
MELO3C008344.2	CmoCh04G025620	Cucurbita moschata (Rifu)	cmomedB762
MELO3C008344.2	Lsi08G005530	Bottle gourd (USVL1VR-Ls)	lsimedB494
MELO3C008344.2	Cp4.1LG01g21160	Cucurbita pepo (Zucchini)	cpemedB468
MELO3C008344.2	CsGy6G004860	Cucumber (Gy14) v2	cgybmedB409
MELO3C008344.2	Cla013820	Watermelon (97103) v1	medwmB301
MELO3C008344.2	ClCG08G006960	Watermelon (Charleston Gray)	medwcgB293
MELO3C008344.2	Cla97C08G149660	Watermelon (97103) v2	medwmbB294
MELO3C008344.2	Bhi04G001366	Wax gourd	medwgoB330
MELO3C008344.2	Carg01601	Silver-seed gourd	carmedB0836
MELO3C008344.2	Carg15789	Silver-seed gourd	carmedB0067
MELO3C008344.2	CsaV3_1G019700	Cucumber (Chinese Long) v3	cucmedB061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008344.2	Cucurbita pepo (Zucchini)	cpemedB202
MELO3C008344.2	Wild cucumber (PI 183967)	cpimedB460
MELO3C008344.2	Cucumber (Chinese Long) v3	cucmedB469