CsaV3_6G005290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G005290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	chr6 : 4473408 .. 4474856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCAAATTACTTCTCTCTTTATCCCTTTATCATCTTTCTTTCTTTTCTCTAATTATTATGTCTCTCTCTATCTCTCTGTCCTCTTTAATTGACAACCCCCCAATTGTTATTGTTTTTTCTTTCGATCAAATTAATGTCTTGGAGAATTAGGGTTTTGTAATTGTTTGACTTTCTTGACGGGGTTCCCTTGAAATTTCATTTTGTTGAAAAAGGCGATACTTTAGCTTCTTCCAGTAAGTAATTAACCTTTCTTCTATTCAGTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGTAAATCTTACCATTGGAGAATAAGTAGGAAGATGACTATTTTAGCATGGTCATTATCTACATAGATGTTCTCCGTTGTGAATGTGTTTAACAGAGGCTCCAAATATTACAAATATTTAACGAAAATGGTCAATTGTTTTAGATTAAGATGTTGATTATGATTAGTAGCTGATCACTCTGTTGCATTTCTTTTAGTTTTGAGATGCTATTGTGAATACAAAATGTTTAGCTTTTCATTTTTTTATATCATTGATTGCCGAGATTTTCCTTTCCTGGAGTTTTAACTGCATTCTGTTGCTGGCTATCATGTTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGGTATGCTTGTTTTCTTCATTAGGGTTGCTTGTAACTTTGTACCACTCTTGGTTTTTAATTCGAATGTAGTAGAGTTAAATAATTTACCTATGAGAACAGTTCAAGTGCATACTAGTTGGTCAGAACGTCACGGATTAAAAAAACGTGTCTTTGTATTTAACTCCATTTCCATGCTATGAAACAACTATGTACCACATACTAGAGTCCATTCCATATGAACTCAATTTATAACCATGGCTAGAAAACAAAACTACAGTGCAGAAGATATTTGAATGCTCTCTTATTTTCAATTAAATCAGGTGAAGTTCAAAACCAAAAGAACAAAAGAAAAGAAAATCCCTGTCCCTCAAGCTGCTTCATTGAGTCTATCCCATACTTCATATGCCTGATACCATATTTTCCTTGTATATACTTTAATTGAAATTTCACTTATTTGTATTTGTCTATTTTCCTTTCCAGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

mRNA sequence

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFLAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Homology

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-like protein LSM3B [Cucumis sativus] >KGN46145.1 hypothetical protein Csa_6G057110 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 85/122 (69.67%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_016719620.1 (PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KHG28334.1 U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 82/121 (67.77%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEE+STVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEDSTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_012069360.1 (sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [Carica papaya] >KDP40389.1 hypothetical protein JCGZ_04208 [Jatropha curcas])

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 82/121 (67.77%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEES VKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESAVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_010260936.1 (PREDICTED: sm-like protein LSM3A [Nelumbo nucifera])

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 81/121 (66.94%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEES VKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESAVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE +TTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-30
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EEE+TV+EPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MSGEEEATVREPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE++TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 126.7 bits (317), Expect = 9.4e-30
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EE++TV+EPLDLIRLS++             E +Y            VK R+D  L 
Sbjct: 1   MSVEEDATVREPLDLIRLSIE-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE +TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. Swiss-Prot
Match: sp|Q9C6K5|LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.9e-29
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EEE+TV+EPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MSGEEEATVREPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE++TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. Swiss-Prot
Match: sp|Q9LMN4|LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-28
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EE++TV+EPLDLIRLS++             E +Y            VK R+D  L 
Sbjct: 1   MSVEEDATVREPLDLIRLSIE-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE +TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. Swiss-Prot
Match: sp|Q32PE9|LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. Swiss-Prot
Match: sp|P62310|LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. Swiss-Prot
Match: sp|P62311|LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. TrEMBL
Match: tr|A0A1S3B4E1|A0A1S3B4E1_CUCME (sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. TrEMBL
Match: tr|A0A0A0K8S0|A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. TrEMBL
Match: tr|A0A0B0PV80|A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 82/121 (67.77%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEE+STVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEDSTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. TrEMBL
Match: tr|A0A1U8LYI1|A0A1U8LYI1_GOSHI (sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 82/121 (67.77%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEE+STVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEDSTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. TrEMBL
Match: tr|A0A067L8E8|A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 82/121 (67.77%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEES VKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESAVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 96

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441520.1	3.1e-31	70.49	PREDICTED: sm-like protein LSM3B [Cucumis melo] >XP_004140968.2 PREDICTED: sm-li...	[more]
XP_022133461.1	1.6e-30	69.67	sm-like protein LSM3A [Momordica charantia] >XP_022952859.1 sm-like protein LSM3...	[more]
XP_016719620.1	2.2e-29	67.77	PREDICTED: sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED:...	[more]
XP_012069360.1	3.8e-29	67.77	sm-like protein LSM3A [Jatropha curcas] >XP_021889077.1 sm-like protein LSM3A [C...	[more]
XP_010260936.1	5.0e-29	66.94	PREDICTED: sm-like protein LSM3A [Nelumbo nucifera]	[more]

BLAST of CsaV3_6G005290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76860.1	5.5e-30	61.16	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	9.4e-30	59.50	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CsaV3_6G005290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C6K5\|LSM3B_ARATH	9.9e-29	61.16	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
sp\|Q9LMN4\|LSM3A_ARATH	1.7e-28	59.50	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
sp\|Q32PE9\|LSM3_BOVIN	2.1e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
sp\|P62310\|LSM3_HUMAN	2.1e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
sp\|P62311\|LSM3_MOUSE	2.1e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of CsaV3_6G005290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4E1\|A0A1S3B4E1_CUCME	2.1e-31	70.49	sm-like protein LSM3B OS=Cucumis melo OX=3656 GN=LOC103485621 PE=4 SV=1	[more]
tr\|A0A0A0K8S0\|A0A0A0K8S0_CUCSA	2.1e-31	70.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057110 PE=4 SV=1	[more]
tr\|A0A0B0PV80\|A0A0B0PV80_GOSAR	1.5e-29	67.77	U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=F383_...	[more]
tr\|A0A1U8LYI1\|A0A1U8LYI1_GOSHI	1.5e-29	67.77	sm-like protein LSM3A OS=Gossypium hirsutum OX=3635 GN=LOC107932177 PE=4 SV=1	[more]
tr\|A0A067L8E8\|A0A067L8E8_JATCU	2.5e-29	67.77	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04208 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000956	nuclear-transcribed mRNA catabolic process
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034105	Lsm3
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005290.1	CsaV3_6G005290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 60..112 e-value: 8.3E-8 score: 31.7
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 36..114 e-value: 4.4E-17 score: 63.7
None	No IPR available	PANTHER	PTHR13110:SF6	SM-LIKE PROTEIN LSM3A-RELATED	coord: 1..23
None	No IPR available	PANTHER	PTHR13110:SF6	SM-LIKE PROTEIN LSM3A-RELATED	coord: 58..116
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 58..116
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..23
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..112 e-value: 1.90501E-36 score: 120.023
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 58..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G005290	CSPI06G04950	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G005290	Cucsa.363670	Cucumber (Gy14) v1	cgycucB556
CsaV3_6G005290	CmaCh04G024470	Cucurbita maxima (Rimu)	cmacucB0907
CsaV3_6G005290	CmoCh04G025620	Cucurbita moschata (Rifu)	cmocucB0898
CsaV3_6G005290	Cp4.1LG01g21160	Cucurbita pepo (Zucchini)	cpecucB0568
CsaV3_6G005290	Cp4.1LG13g03930	Cucurbita pepo (Zucchini)	cpecucB0237
CsaV3_6G005290	Carg15789	Silver-seed gourd	carcucB0072
CsaV3_6G005290	Carg01601	Silver-seed gourd	carcucB0874
CsaV3_6G005290	ClCG08G006960	Watermelon (Charleston Gray)	cucwcgB529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G005290	Watermelon (97103) v1	cucwmB496
CsaV3_6G005290	Watermelon (97103) v2	cucwmbB519
CsaV3_6G005290	Wax gourd	cucwgoB593
CsaV3_6G005290	Cucumber (Chinese Long) v3	cuccucB050
CsaV3_6G005290	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G005290	Cucurbita maxima (Rimu)	cmacucB0362
CsaV3_6G005290	Cucurbita moschata (Rifu)	cmocucB0359
CsaV3_6G005290	Bottle gourd (USVL1VR-Ls)	cuclsiB509
CsaV3_6G005290	Melon (DHL92) v3.5.1	cucmeB480
CsaV3_6G005290	Melon (DHL92) v3.6.1	cucmedB469