CSPI06G04950 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G04950
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	U6 snRNA-associated Sm-like protein LSm3
Location	Chr6 : 4499642 .. 4501772 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTGAGAAAAAGAAAAAAAAGGAAAAAGAATAGGAACTAAAAACAAACGTGGATCGGGTCGGGTCAACAAAGAGAGCATTGGGGAATTGGGGTTGGCATTTTGTTTTGGGGATCGGAAAACTCATAAACCCCAACTCGTCAGTTTGCGATTTCAGAGCTTCCAACACCACCAAAAATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCAAATTACTTCTCTCTTTATCCCTTTATCTTCTTTCTTTCTTTTCTCTAATTATTATGTCTCTCTCTATCTCTCTGTCCTCTTTAATTGACAACCCCCCCCAATTGTTATTGTTTTTTCTTTCGATCAAATTAATGTCTTGGAGAATTAGGGTTTTGTAATTGTTTGACTTTCTTGACGGGGTTCCCTTAAAATTTCATTTTGTTGAAAAAGGCGATACTTTAGCTTCTTCCAGTAAGTAATTAACCTTTCTTCTATTCAGTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCGAAGCTAGAGCAGACGCGTTTCTCGTAAATCTTACCATTGGAGAATAAGTAGGAAGATGGCTATTTTAGCATGGTCATTATCTACATAGATATTCTCCGTTGTGAATGTGTTTAACAGAGGCTCCAAATATTACAAATATTTAACGAAAATGGTCAATTGTTCTAGATTAAGATGTTGATTATGATTAGTAGCTGATCACTCTGTTGCATTTCTTTTAGTTTTGAGATGCTATTGTGAATACAAAATGTTTAGCTTTTCATTTTTTTATATCATTGATTGCTGAGATTTTCCTTCCCTGGAGTTTTAACTGCATTCTGTTGCTGGCTATCATGTTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGGTATGCTTGTTTTCTTCATTAGGGTTGCTTGTAACTTTGTACCACTCTTGGTTTTTAATTCGAATGTAGTAGAGTTAAATAATTTACCTATGAGAACAGTTCAAGTGCATACTAGTTGGTCAGAACGTCACGGATTAAAAAAACGTGTCTTTGTATTTAACTCCATTTCAATGCTATGAAACAACTATGTACCACATACTAGAGTCCATTCCATATGAACTCAATTTATAACCATGGCTAGAAAACAAAACTACAGTGCAGAAGATATTTGAATGCTCTCTTATTTTCAATTAAATCAGGTGAAGTTCAAAACCAAAAGAACAAAAGAAAAGAAAATCCCTGTCCCTCAAGCTGCTTCATTAAGTCTATCCCATACTTCATATGCCTGATACCATATTTTCCTTGTATATACTTTAATTGAAATTTCACTTATTTGTATTTGTCTATTTTCCTTTCCAGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAGCCATCAGTCATTTGCGTGCATCTTTAATGGGAACTTCATATTAGCCTTCTCTACCAAATTGACTGGAGTTGGAATACTGTCAAGTACTCAACGCATTCATAGACTAGGTTTATCATTTACTTTTTATGCACATGTTCTATTACATAAACTAGTTAGTTGTTTTGATATATTTGAGTGATAGCTGTAGTTTTCTGACACTTTAATTGGCTGCACAAATTTAAGGCCTTCAGATTTTGAATGCAAGGCCAAGTAAACAAAATTTGAAATTGTGCATAAGCCTCGCTTGGTTTCTTATCTGTTTTGATTTGTCTTCATTCTTATTGAAAAGCTTGTTTTGTTGGATTCTTGGACAAGTTTATTTTTACCAGATGAAATTTGGAGTATTAGTTAGTGAGTATCACGAATTGATCTCAAATGACATCTCAGAACCATTGTCATTGTATACAGGTTTCTGTGTGGCACAATGACATGAAATTATCATCCTTCGTATTTCTTTA

mRNA sequence

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTAGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Homology

[Close]

BLAST of CSPI06G04950 vs. Swiss-Prot
Match: LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-42
Identity = 85/96 (88.54%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. Swiss-Prot
Match: LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-42
Identity = 83/96 (86.46%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CSPI06G04950 vs. Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CSPI06G04950 vs. Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-36
Identity = 71/89 (79.78%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE+VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CSPI06G04950 vs. TrEMBL
Match: A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of CSPI06G04950 vs. TrEMBL
Match: A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TrEMBL
Match: A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TrEMBL
Match: B9T2G3_RICCO (Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.3e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TrEMBL
Match: A0A0B2SAJ4_GLYSO (U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja GN=glysoja_030105 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.3e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 172.9 bits (437), Expect = 9.5e-44
Identity = 85/96 (88.54%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-43
Identity = 83/96 (86.46%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of CSPI06G04950 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E  T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of CSPI06G04950 vs. NCBI nr
Match: gi|659081800|ref|XP_008441520.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 3.6e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of CSPI06G04950 vs. NCBI nr
Match: gi|728848891|gb|KHG28334.1| (U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. NCBI nr
Match: gi|802578114|ref|XP_012069360.1| (PREDICTED: sm-like protein LSM3A [Jatropha curcas])

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. NCBI nr
Match: gi|720015745|ref|XP_010260936.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera])

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE +TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of CSPI06G04950 vs. NCBI nr
Match: gi|351722343|ref|NP_001235961.1| (uncharacterized protein LOC100499782 [Glycine max])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of CSPI06G04950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM3B_ARATH	1.7e-42	88.54	Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1	[more]
LSM3A_ARATH	2.9e-42	86.46	Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1	[more]
LSM3_MOUSE	1.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2	[more]
LSM3_HUMAN	1.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	[more]
LSM3_BOVIN	1.4e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3	[more]

BLAST of CSPI06G04950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8S0_CUCSA	2.5e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1	[more]
A0A0B0PV80_GOSAR	1.4e-43	96.88	U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=...	[more]
A0A067L8E8_JATCU	2.4e-43	96.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1	[more]
B9T2G3_RICCO	5.3e-43	95.83	Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1	[more]
A0A0B2SAJ4_GLYSO	5.3e-43	95.83	U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja GN=glysoja_030105 PE=4 ...	[more]

BLAST of CSPI06G04950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76860.1	9.5e-44	88.54	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	1.6e-43	86.46	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	4.2e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	4.2e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CSPI06G04950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081800\|ref\|XP_008441520.1\|	3.6e-45	100.00	PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo]	[more]
gi\|728848891\|gb\|KHG28334.1\|	2.0e-43	96.88	U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum]	[more]
gi\|802578114\|ref\|XP_012069360.1\|	3.4e-43	96.88	PREDICTED: sm-like protein LSM3A [Jatropha curcas]	[more]
gi\|720015745\|ref\|XP_010260936.1\|	4.4e-43	95.83	PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera]	[more]
gi\|351722343\|ref\|NP_001235961.1\|	7.6e-43	95.83	uncharacterized protein LOC100499782 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G04950.1	CSPI06G04950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..92 score: 3.5
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..92 score: 7.1
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 11..93 score: 9.31
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 10..93 score: 5.8
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..97 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G04950	Cla013820	Watermelon (97103) v1	cpiwmB485
CSPI06G04950	Csa6G057110	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G04950	ClCG08G006960	Watermelon (Charleston Gray)	cpiwcgB536
CSPI06G04950	CsaV3_6G005290	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G04950	Cucsa.363670	Cucumber (Gy14) v1	cgycpiB540
CSPI06G04950	CmaCh04G024470	Cucurbita maxima (Rimu)	cmacpiB778
CSPI06G04950	CmoCh04G025620	Cucurbita moschata (Rifu)	cmocpiB769
CSPI06G04950	Cp4.1LG01g21160	Cucurbita pepo (Zucchini)	cpecpiB460
CSPI06G04950	Cp4.1LG13g03930	Cucurbita pepo (Zucchini)	cpecpiB198
CSPI06G04950	Carg01601	Silver-seed gourd	carcpiB0870
CSPI06G04950	Carg15789	Silver-seed gourd	carcpiB0070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G04950	Cucumber (Chinese Long) v3	cpicucB315
CSPI06G04950	Watermelon (97103) v2	cpiwmbB526
CSPI06G04950	Wax gourd	cpiwgoB579
CSPI06G04950	Cucurbita maxima (Rimu)	cmacpiB315
CSPI06G04950	Cucurbita moschata (Rifu)	cmocpiB306
CSPI06G04950	Melon (DHL92) v3.5.1	cpimeB469
CSPI06G04950	Bottle gourd (USVL1VR-Ls)	cpilsiB487
CSPI06G04950	Melon (DHL92) v3.6.1	cpimedB460
CSPI06G04950	Cucumber (Gy14) v2	cgybcpiB288