Cp4.1LG01g09950 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g09950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ferredoxin-thioredoxin reductase, variable chain
Location	Cp4.1LG01 : 6951196 .. 6951729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTAGAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTTAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTAGAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTTAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Coding sequence (CDS)

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTAGAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTTAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Protein sequence

MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSIRRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Homology

[Close]

BLAST of Cp4.1LG01g09950 vs. Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 94  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEF 153
           + AAA +IG RVRV  PL+VYHV K P+ D++GMEGV+K YV VWKGKRV+AN P+KVEF
Sbjct: 11  EAAAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEF 70

Query: 154 VVPVEGRP-PVKFVAHLKEEEFEYV 178
            + VEG+P PV+F AHL+E+EFE+V
Sbjct: 71  ELAVEGQPKPVRFFAHLREDEFEFV 95

[Close]

BLAST of Cp4.1LG01g09950 vs. Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-19
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 1


Query: 65  EVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPEADL 124
           EV +KSDS T       S++++   EDE  +    ++G +V+VK PLKVYHV KLPE +L
Sbjct: 63  EVALKSDSST----GFDSSSSSPPEEDEELKKNLEKVGCKVKVKSPLKVYHVPKLPEVEL 122

Query: 125 -EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
              M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Sbjct: 123 TPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172

[Close]

BLAST of Cp4.1LG01g09950 vs. TrEMBL
Match: A0A0A0KV36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.4e-75
Identity = 156/181 (86.19%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  RRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]

BLAST of Cp4.1LG01g09950 vs. TrEMBL
Match: W9RQM9_9ROSA (Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_011027 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-33
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = 1


Query: 35  SSYSPSVSSLSSVVVNPFNCSIRRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETD 94
           SS S    SLS   ++PF  + RR RR   EV +KSDS T  S++  S + +S      D
Sbjct: 30  SSCSCLSVSLSPCKISPFATATRR-RRISCEVAIKSDSATSPSSSEFSESPSSSPGTADD 89

Query: 95  EAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFV 154
           E   ARIGARVRVKVPLKVYHV K+PE D+ GMEG LK YV VWKGKR+SANLPYKV+F+
Sbjct: 90  ETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQYVGVWKGKRISANLPYKVQFL 149

Query: 155 VPVEGRPPVKFVAHLKEEEFEYV 178
             VEGR  VKF AHLKE+EFEYV
Sbjct: 150 TEVEGRGKVKFFAHLKEDEFEYV 171

[Close]

BLAST of Cp4.1LG01g09950 vs. TrEMBL
Match: A5B8T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.9e-32
Identity = 92/176 (52.27%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSP----SVSSLSSVVVNPFNCSIRRGRR 65
           N++      +P   R + +  V SS+   SS S     SV S SS VV+      RR R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPLKV+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]

BLAST of Cp4.1LG01g09950 vs. TrEMBL
Match: R0FH45_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 85/180 (47.22%), Postives = 116/180 (64.44%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSIRRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ +  ++ L S VV P +    + R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 123
              R  S +T++ D  T S+ +   +++ S  ED+ +  A A+IG+RVRV  PLKVYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

[Close]

BLAST of Cp4.1LG01g09950 vs. TrEMBL
Match: V4N5K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.5e-29
Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 1


Query: 9   GVIPTPAPTAA-RPACSMTVFSSTDFKSSYSPSVSSLSSVVVN--------PFNCSIRRG 68
           G   +PA  AA RP  S   FS+       +   SS SS+V             C+I   
Sbjct: 4   GFAVSPAIVAAVRPPASQDCFSAVSVNGPKAIYASSCSSIVATISLSTSYGRSKCAISIS 63

Query: 69  RRFFSEVTVKSDSGTLSSAAAVSA--ATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 128
           R+     T++ D  T+ SAA+V A  +T + SE E DE A A+IGARVRV VPLKVYHV 
Sbjct: 64  RKN-PRSTIRRDI-TVKSAASVDADLSTPASSETEEDEKAKAKIGARVRVTVPLKVYHVV 123

Query: 129 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE +L GMEG +KDYV +WKGKR+SANLPYKV+FV  +EGR PVKF  HLKE+EFE++
Sbjct: 124 RVPEVELMGMEGFIKDYVVLWKGKRISANLPYKVQFVKEIEGRGPVKFFTHLKEDEFEFL 181

[Close]

BLAST of Cp4.1LG01g09950 vs. TAIR10
Match: AT5G23440.1 (AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 81/184 (44.02%), Postives = 117/184 (63.59%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSIRRGR--- 63
           M++ I + P  A    RP+ S    S++   ++ +P   +L S +V P +    + +   
Sbjct: 1   MSSQIALSPAIAAAIRRPS-SHDCLSASATTATATPM--ALKSCIVAPLSLFTSQSQIKH 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSA----ATTSLSEDETDEAAAARIGARVRVKVPLKV 123
              R  S  T++ D   + SA +++A    +++  SE+E +  A A+IG+RVRV  PLKV
Sbjct: 61  SSSRKTSRTTIRCDVA-IKSADSINADANPSSSPSSEEEIEAEAKAKIGSRVRVTAPLKV 120

Query: 124 YHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE 178
           YHV ++PE DLEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+E
Sbjct: 121 YHVNRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKIEFFKEIEGRGLVKFVSHLKEDE 180

[Close]

BLAST of Cp4.1LG01g09950 vs. TAIR10
Match: AT5G08410.1 (AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)

HSP 1 Score: 124.8 bits (312), Expect = 5.3e-29
Identity = 82/183 (44.81%), Postives = 106/183 (57.92%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSIRRGRRFF 63
           M NS  + P     A RP  S     +       S + SS S  V    + S  R +  F
Sbjct: 1   MTNSYALSPAII-AAVRPPASQDYLVAASLSGRKSINSSSSSIFVPISLSTSYGRSKCAF 60

Query: 64  S------EVTVKSDSGTLSSAAAVSAATTSLS---EDETDEAAAARIGARVRVKVPLKVY 123
           S      + T++ D    S+A+  + A  S S   E E DE A  +IGARVRV VPLKVY
Sbjct: 61  SISRKNPKSTIRCDIAVKSAASVDADADLSSSTSLETEEDEKAKEKIGARVRVTVPLKVY 120

Query: 124 HVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEF 178
           HV ++PE +L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EF
Sbjct: 121 HVVRVPEVELMGMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRGPVKFFTHLKEDEF 180

[Close]

BLAST of Cp4.1LG01g09950 vs. NCBI nr
Match: gi|449458714|ref|XP_004147092.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 156/181 (86.19%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  RRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]

BLAST of Cp4.1LG01g09950 vs. NCBI nr
Match: gi|659090253|ref|XP_008445916.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 8.8e-74
Identity = 154/181 (85.08%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+S SV SLSSVVVNPFNCSI
Sbjct: 1   MIGIANSIGLMPPPVPSSASVAARFACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSI 60

Query: 61  RRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRR FSEV+V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVSVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEY
Sbjct: 121 AKLPEANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPIKFVAHLKEEEFEY 180

[Close]

BLAST of Cp4.1LG01g09950 vs. NCBI nr
Match: gi|703132722|ref|XP_010105193.1| (Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis])

HSP 1 Score: 149.1 bits (375), Expect = 7.5e-33
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = 1


Query: 35  SSYSPSVSSLSSVVVNPFNCSIRRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETD 94
           SS S    SLS   ++PF  + RR RR   EV +KSDS T  S++  S + +S      D
Sbjct: 30  SSCSCLSVSLSPCKISPFATATRR-RRISCEVAIKSDSATSPSSSEFSESPSSSPGTADD 89

Query: 95  EAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFV 154
           E   ARIGARVRVKVPLKVYHV K+PE D+ GMEG LK YV VWKGKR+SANLPYKV+F+
Sbjct: 90  ETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQYVGVWKGKRISANLPYKVQFL 149

Query: 155 VPVEGRPPVKFVAHLKEEEFEYV 178
             VEGR  VKF AHLKE+EFEYV
Sbjct: 150 TEVEGRGKVKFFAHLKEDEFEYV 171

[Close]

BLAST of Cp4.1LG01g09950 vs. NCBI nr
Match: gi|225463817|ref|XP_002271306.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera])

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 92/176 (52.27%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSP----SVSSLSSVVVNPFNCSIRRGRR 65
           N++      +P   R + +  V SS+   SS S     SV S SS VV+      RR R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPLKV+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]

BLAST of Cp4.1LG01g09950 vs. NCBI nr
Match: gi|565461520|ref|XP_006288759.1| (hypothetical protein CARUB_v10002077mg [Capsella rubella])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 85/180 (47.22%), Postives = 116/180 (64.44%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSIRRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ +  ++ L S VV P +    + R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 123
              R  S +T++ D  T S+ +   +++ S  ED+ +  A A+IG+RVRV  PLKVYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTRV_MAIZE	5.8e-25	64.71	Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1	[more]
FTRV_SPIOL	3.6e-19	49.12	Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oler...	[more]

BLAST of Cp4.1LG01g09950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV36_CUCSA	9.4e-75	86.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1	[more]
W9RQM9_9ROSA	5.2e-33	60.14	Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_0110...	[more]
A5B8T4_VITVI	9.9e-32	52.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=...	[more]
R0FH45_9BRAS	1.4e-30	47.22	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1	[more]
V4N5K8_EUTSA	3.5e-29	49.44	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g09950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23440.1	1.1e-29	44.02	ferredoxin/thioredoxin reductase subunit A (variable subunit) 1	[more]
AT5G08410.1	5.3e-29	44.81	ferredoxin/thioredoxin reductase subunit A (variable subunit) 2	[more]

BLAST of Cp4.1LG01g09950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458714\|ref\|XP_004147092.1\|	1.4e-74	86.19	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]	[more]
gi\|659090253\|ref\|XP_008445916.1\|	8.8e-74	85.08	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo]	[more]
gi\|703132722\|ref\|XP_010105193.1\|	7.5e-33	60.14	Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis]	[more]
gi\|225463817\|ref\|XP_002271306.1\|	1.4e-31	52.27	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera]	[more]
gi\|565461520\|ref\|XP_006288759.1\|	2.0e-30	47.22	hypothetical protein CARUB_v10002077mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0009107	lipoate biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016992	lipoate synthase activity
GO:0051539	4 iron, 4 sulfur cluster binding

Vocabulary: **INTERPRO**
Term	Definition
IPR008990	Elect_transpt_acc-like_dom_sf
IPR004207	Fd_thioredoxin_Rdtase_alpha
IPR003698	Lipoyl_synth

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09950.1	Cp4.1LG01g09950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003698	Lipoyl synthase	PANTHER	PTHR10949	LIPOYL SYNTHASE	coord: 86..177 score: 4.6
IPR004207	Ferredoxin thioredoxin reductase, alpha chain	PRODOM	PD015034		coord: 110..177 score: 7.0
IPR004207	Ferredoxin thioredoxin reductase, alpha chain	PFAM	PF02941	FeThRed_A	coord: 101..173 score: 1.6
IPR008990	Electron transport accessory protein-like domain	unknown	SSF50090	Electron transport accessory proteins	coord: 100..176 score: 4.59
None	No IPR available	GENE3D	G3DSA:2.30.30.50		coord: 100..177 score: 4.4
None	No IPR available	PANTHER	PTHR10949:SF11	SUBFAMILY NOT NAMED	coord: 86..177 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g09950	Cucsa.281120	Cucumber (Gy14) v1	cgycpeB0736
Cp4.1LG01g09950	CmaCh18G008380	Cucurbita maxima (Rimu)	cmacpeB434
Cp4.1LG01g09950	CmaCh04G012800	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g09950	CmoCh04G013490	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g09950	Cla022889	Watermelon (97103) v1	cpewmB456
Cp4.1LG01g09950	Csa5G580660	Cucumber (Chinese Long) v2	cpecuB418
Cp4.1LG01g09950	MELO3C011775	Melon (DHL92) v3.5.1	cpemeB376
Cp4.1LG01g09950	ClCG11G012840	Watermelon (Charleston Gray)	cpewcgB357
Cp4.1LG01g09950	CSPI05G20480	Wild cucumber (PI 183967)	cpecpiB417
Cp4.1LG01g09950	Lsi04G007630	Bottle gourd (USVL1VR-Ls)	cpelsiB358
Cp4.1LG01g09950	MELO3C011776.2	Melon (DHL92) v3.6.1	cpemedB436
Cp4.1LG01g09950	CsaV3_5G029240	Cucumber (Chinese Long) v3	cpecucB0520
Cp4.1LG01g09950	Bhi07G000943	Wax gourd	cpewgoB0556
Cp4.1LG01g09950	CsGy5G020000	Cucumber (Gy14) v2	cgybcpeB628
Cp4.1LG01g09950	Carg02037	Silver-seed gourd	carcpeB1177
Cp4.1LG01g09950	Carg14427	Silver-seed gourd	carcpeB1020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g09950	Silver-seed gourd	carcpeB1021
Cp4.1LG01g09950	Cucurbita pepo (Zucchini)	cpecpeB036
Cp4.1LG01g09950	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g09950	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g09950	Cucurbita moschata (Rifu)	cmocpeB399
Cp4.1LG01g09950	Bottle gourd (USVL1VR-Ls)	cpelsiB352