CmoCh04G013490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ferredoxin-thioredoxin reductase, variable chain
Location	Cmo_Chr04 : 6882910 .. 6883443 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCCACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACTGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCCACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACTGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Coding sequence (CDS)

ATGATCACTATGGCGAACAGTATCGGCGTGATACCAACGCCGGCGCCCACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCCCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACTGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTCGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Homology

[Close]

BLAST of CmoCh04G013490 vs. Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 94  DEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEF 153
           + AAA +IG RVRV  PL+VYHV K P+ D++GMEGV+K YV VWKGKRV+AN P+KVEF
Sbjct: 11  EAAAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEF 70

Query: 154 VVPVEGRP-PVKFVAHLKEEEFEYV 178
            + VEG+P PV+F AHL+E+EFE+V
Sbjct: 71  ELAVEGQPKPVRFFAHLREDEFEFV 95

[Close]

BLAST of CmoCh04G013490 vs. Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 67/168 (39.88%), Postives = 95/168 (56.55%), Query Frame = 1


Query: 17  TAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNC-SITRGRR-----FFSEVTVKS 76
           ++A  A + T  ++   +     S ++ S+ V +   C +ITR R         EV +KS
Sbjct: 9   SSATAASTATATAAATARIPLFLSRNNSSATVCSTLRCRTITRTRTRARLAICCEVALKS 68

Query: 77  DSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPEADL-EGMEG 136
           DS T       S++++   EDE  +    ++G +V+VK PLKVYHV KLPE +L   M G
Sbjct: 69  DSST----GFDSSSSSPPEEDEELKKNLEKVGCKVKVKSPLKVYHVPKLPEVELTPDMVG 128

Query: 137 VLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           V+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Sbjct: 129 VIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172

[Close]

BLAST of CmoCh04G013490 vs. TrEMBL
Match: A0A0A0KV36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.0e-74
Identity = 155/181 (85.64%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
            RGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]

BLAST of CmoCh04G013490 vs. TrEMBL
Match: W9RQM9_9ROSA (Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_011027 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.9e-33
Identity = 91/164 (55.49%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 27  VFSSTD-------FKSSYSPSVSSLSSVVVNPFNCSI------TRGRRFFSEVTVKSDSG 86
           + SSTD        K S+  S SS S + V+   C I      TR RR   EV +KSDS 
Sbjct: 8   LLSSTDHAMILAAMKPSFISSSSSCSCLSVSLSPCKISPFATATRRRRISCEVAIKSDSA 67

Query: 87  TLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKD 146
           T  S++  S + +S      DE   ARIGARVRVKVPLKVYHV K+PE D+ GMEG LK 
Sbjct: 68  TSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQ 127

Query: 147 YVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           YV VWKGKR+SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 128 YVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]

BLAST of CmoCh04G013490 vs. TrEMBL
Match: A5B8T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.3e-31
Identity = 91/176 (51.70%), Postives = 112/176 (63.64%), Query Frame = 1


Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSP----SVSSLSSVVVNPFNCSITRGRR 65
           N++      +P   R + +  V SS+   SS S     SV S SS VV+       R R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPLKV+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]

BLAST of CmoCh04G013490 vs. TrEMBL
Match: R0FH45_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 85/180 (47.22%), Postives = 117/180 (65.00%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ +  ++ L S VV P +   ++ R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 123
              R  S +T++ D  T S+ +   +++ S  ED+ +  A A+IG+RVRV  PLKVYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

[Close]

BLAST of CmoCh04G013490 vs. TrEMBL
Match: V4N5K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 89/180 (49.44%), Postives = 114/180 (63.33%), Query Frame = 1


Query: 9   GVIPTPAPTAA-RPACSMTVFSSTDFKSSYSPSVSSLSSVVVN--------PFNCSITRG 68
           G   +PA  AA RP  S   FS+       +   SS SS+V             C+I+  
Sbjct: 4   GFAVSPAIVAAVRPPASQDCFSAVSVNGPKAIYASSCSSIVATISLSTSYGRSKCAISIS 63

Query: 69  RRFFSEVTVKSDSGTLSSAAAVSA--ATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 128
           R+     T++ D  T+ SAA+V A  +T + SE E DE A A+IGARVRV VPLKVYHV 
Sbjct: 64  RKN-PRSTIRRDI-TVKSAASVDADLSTPASSETEEDEKAKAKIGARVRVTVPLKVYHVV 123

Query: 129 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE +L GMEG +KDYV +WKGKR+SANLPYKV+FV  +EGR PVKF  HLKE+EFE++
Sbjct: 124 RVPEVELMGMEGFIKDYVVLWKGKRISANLPYKVQFVKEIEGRGPVKFFTHLKEDEFEFL 181

[Close]

BLAST of CmoCh04G013490 vs. TAIR10
Match: AT5G23440.1 (AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)

HSP 1 Score: 127.5 bits (319), Expect = 8.2e-30
Identity = 81/184 (44.02%), Postives = 118/184 (64.13%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--- 63
           M++ I + P  A    RP+ S    S++   ++ +P   +L S +V P +   ++ +   
Sbjct: 1   MSSQIALSPAIAAAIRRPS-SHDCLSASATTATATPM--ALKSCIVAPLSLFTSQSQIKH 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSA----ATTSLSEDETDEAAAARIGARVRVKVPLKV 123
              R  S  T++ D   + SA +++A    +++  SE+E +  A A+IG+RVRV  PLKV
Sbjct: 61  SSSRKTSRTTIRCDVA-IKSADSINADANPSSSPSSEEEIEAEAKAKIGSRVRVTAPLKV 120

Query: 124 YHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE 178
           YHV ++PE DLEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+E
Sbjct: 121 YHVNRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKIEFFKEIEGRGLVKFVSHLKEDE 180

[Close]

BLAST of CmoCh04G013490 vs. TAIR10
Match: AT5G08410.1 (AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-29
Identity = 83/185 (44.86%), Postives = 109/185 (58.92%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--- 63
           M NS  + P     A RP  S     +     S   S++S SS +  P + S + GR   
Sbjct: 1   MTNSYALSPAII-AAVRPPASQDYLVAASL--SGRKSINSSSSSIFVPISLSTSYGRSKC 60

Query: 64  -----RFFSEVTVKSDSGTLSSAAAVSAATTSLS---EDETDEAAAARIGARVRVKVPLK 123
                R   + T++ D    S+A+  + A  S S   E E DE A  +IGARVRV VPLK
Sbjct: 61  AFSISRKNPKSTIRCDIAVKSAASVDADADLSSSTSLETEEDEKAKEKIGARVRVTVPLK 120

Query: 124 VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEE 178
           VYHV ++PE +L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+
Sbjct: 121 VYHVVRVPEVELMGMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRGPVKFFTHLKED 180

[Close]

BLAST of CmoCh04G013490 vs. NCBI nr
Match: gi|449458714|ref|XP_004147092.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 155/181 (85.64%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
            RGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]

BLAST of CmoCh04G013490 vs. NCBI nr
Match: gi|659090253|ref|XP_008445916.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 7.4e-73
Identity = 153/181 (84.53%), Postives = 166/181 (91.71%), Query Frame = 1


Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSI 60
           MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+S SV SLSSVVVNPFNCSI
Sbjct: 1   MIGIANSIGLMPPPVPSSASVAARFACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHV 120
            RGRR FSEV+V+SDSGT SSA AVSAATTSLSE+ETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVSVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEY
Sbjct: 121 AKLPEANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPIKFVAHLKEEEFEY 180

[Close]

BLAST of CmoCh04G013490 vs. NCBI nr
Match: gi|703132722|ref|XP_010105193.1| (Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis])

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 91/164 (55.49%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 27  VFSSTD-------FKSSYSPSVSSLSSVVVNPFNCSI------TRGRRFFSEVTVKSDSG 86
           + SSTD        K S+  S SS S + V+   C I      TR RR   EV +KSDS 
Sbjct: 8   LLSSTDHAMILAAMKPSFISSSSSCSCLSVSLSPCKISPFATATRRRRISCEVAIKSDSA 67

Query: 87  TLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPEADLEGMEGVLKD 146
           T  S++  S + +S      DE   ARIGARVRVKVPLKVYHV K+PE D+ GMEG LK 
Sbjct: 68  TSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQ 127

Query: 147 YVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           YV VWKGKR+SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 128 YVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]

BLAST of CmoCh04G013490 vs. NCBI nr
Match: gi|225463817|ref|XP_002271306.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 91/176 (51.70%), Postives = 112/176 (63.64%), Query Frame = 1


Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSP----SVSSLSSVVVNPFNCSITRGRR 65
           N++      +P   R + +  V SS+   SS S     SV S SS VV+       R R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPLKV+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]

BLAST of CmoCh04G013490 vs. NCBI nr
Match: gi|565461520|ref|XP_006288759.1| (hypothetical protein CARUB_v10002077mg [Capsella rubella])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 85/180 (47.22%), Postives = 117/180 (65.00%), Query Frame = 1


Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSPSVSSLSSVVVNPFNCSITRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ +  ++ L S VV P +   ++ R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAATTSLSEDETDEAAAARIGARVRVKVPLKVYHVA 123
              R  S +T++ D  T S+ +   +++ S  ED+ +  A A+IG+RVRV  PLKVYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

The following BLAST results are available for this feature:

BLAST of CmoCh04G013490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTRV_MAIZE	5.8e-25	64.71	Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1	[more]
FTRV_SPIOL	1.8e-18	39.88	Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oler...	[more]

BLAST of CmoCh04G013490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV36_CUCSA	8.0e-74	85.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1	[more]
W9RQM9_9ROSA	8.9e-33	55.49	Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_0110...	[more]
A5B8T4_VITVI	8.3e-31	51.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=...	[more]
R0FH45_9BRAS	1.4e-30	47.22	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1	[more]
V4N5K8_EUTSA	2.7e-29	49.44	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1	[more]

BLAST of CmoCh04G013490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23440.1	8.2e-30	44.02	ferredoxin/thioredoxin reductase subunit A (variable subunit) 1	[more]
AT5G08410.1	4.1e-29	44.86	ferredoxin/thioredoxin reductase subunit A (variable subunit) 2	[more]

BLAST of CmoCh04G013490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458714\|ref\|XP_004147092.1\|	1.1e-73	85.64	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]	[more]
gi\|659090253\|ref\|XP_008445916.1\|	7.4e-73	84.53	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo]	[more]
gi\|703132722\|ref\|XP_010105193.1\|	1.3e-32	55.49	Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis]	[more]
gi\|225463817\|ref\|XP_002271306.1\|	1.2e-30	51.70	PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera]	[more]
gi\|565461520\|ref\|XP_006288759.1\|	2.0e-30	47.22	hypothetical protein CARUB_v10002077mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003698	Lipoyl_synth
IPR004207	Fd_thioredoxin_Rdtase_alpha
IPR008990	Elect_transpt_acc-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0051539	4 iron, 4 sulfur cluster binding
GO:0016992	lipoate synthase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009107	lipoate biosynthetic process
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013490.1	CmoCh04G013490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003698	Lipoyl synthase	PANTHER	PTHR10949	LIPOYL SYNTHASE	coord: 86..177 score: 4.6
IPR004207	Ferredoxin thioredoxin reductase, alpha chain	PRODOM	PD015034		coord: 110..177 score: 6.0
IPR004207	Ferredoxin thioredoxin reductase, alpha chain	PFAM	PF02941	FeThRed_A	coord: 101..173 score: 1.6
IPR008990	Electron transport accessory protein-like domain	unknown	SSF50090	Electron transport accessory proteins	coord: 100..176 score: 4.59
None	No IPR available	GENE3D	G3DSA:2.30.30.50		coord: 100..177 score: 4.4
None	No IPR available	PANTHER	PTHR10949:SF11	SUBFAMILY NOT NAMED	coord: 86..177 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G013490	Cucsa.281120	Cucumber (Gy14) v1	cgycmoB0774
CmoCh04G013490	CmaCh18G008380	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013490	CmaCh04G012800	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013490	Cla022889	Watermelon (97103) v1	cmowmB724
CmoCh04G013490	Csa5G580660	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013490	MELO3C011775	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013490	ClCG11G012840	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013490	CSPI05G20480	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013490	Lsi04G007630	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013490	Cp4.1LG01g09950	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013490	MELO3C011776.2	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013490	CsaV3_5G029240	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013490	Cla97C11G218730	Watermelon (97103) v2	cmowmbB698
CmoCh04G013490	Bhi07G000943	Wax gourd	cmowgoB0891
CmoCh04G013490	CsGy5G020000	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013490	Carg02037	Silver-seed gourd	carcmoB1138
CmoCh04G013490	Carg14427	Silver-seed gourd	carcmoB0986

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013490	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013490	Cucurbita moschata (Rifu)	cmocmoB343
CmoCh04G013490	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013490	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013490	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013490	Silver-seed gourd	carcmoB0987