CSPI05G20480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G20480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionFerredoxin-thioredoxin reductase, variable chain
LocationChr5 : 21564619 .. 21565830 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTTTCTTTTTTCAAAAGAAAGAATAGAAAATAAATTTGCTCTTCACGAAGTGGAGAATATCTGGTAAGGTAAGGTAAGGATGTGTGCGTGTGAGTGTGTGTGGACAGCGGCAATAAACTAATAAAATAAAATTGAAGGAAGAGGAAACAATTTTAAAAACTCTCAAACTAATATTCATTTCCTTCTTCGGCGAAACACTCCTCCCGCGGCACAGAAATGATTAGTATTGCGAACAGTATCGGCGTGATACCATCACCGGCTCCGTCGTCGGCGTCGATGGCTGCACGTTTTGCCTGTTCTATGACGGTATTCTCTACTGCTGATGTTAAATCTTCCTTTTCCTCATCCGTTTGTTCTCTATCGTCACTTGTTGTTAATCCTTTCAACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGATCAGATTCTGGAACTTCGCCTTCAGCTACCGCTGTTTCGGCGGCGACTACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGGATTGGAGCTAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCAAATCTTGAGGGAATGGAAGGAGTGGTGAAGGATTATGTACGTGTTTGGAAAGGGAAGCGTGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCTGTTGAAGGTCGTCCACCTGTCAAATTTGTTGCTCATCTTAAGGAGGAAGAGTTTGAATACGTTTAATCAGGCTTGTTATTCATCATCCTCTTCATTCTAATGAATCATCAAGCCAAGACAATTGTTGTTTTTCCGATCTCAGTATTAATACCAAGCTCCCTTGTGCAGTATTATTGTCAACCTTTTAAGGTTTGATCTTCTTCTATATTTCTATCTACACCATTTACTCTTTGCCTTTGTAATGTAGAAAAATTGCTCGAGTGTTTTTCTCCTGAGCTAGTTAACTTTCTCGATTCTCGATGTGGCTTTGTAAAATAATTGCGCCAAGACAAGAGGAAATTTAGTCATCTAATACATGTCTGATCCAAATGGTTTCACAATCGGTTACTCTTGTATGGATGTTGTTTCAACAACTTATTGTGCTTCATATTTTACTTGGAGGGAGGATGGGGATTTGAAGTGGTTGGACTTTCCTTCCATTGTCAAGATAAATGCATACTTGTTTCTTGTTAA

mRNA sequence

ATGATTAGTATTGCGAACAGTATCGGCGTGATACCATCACCGGCTCCGTCGTCGGCGTCGATGGCTGCACGTTTTGCCTGTTCTATGACGGTATTCTCTACTGCTGATGTTAAATCTTCCTTTTCCTCATCCGTTTGTTCTCTATCGTCACTTGTTGTTAATCCTTTCAACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGATCAGATTCTGGAACTTCGCCTTCAGCTACCGCTGTTTCGGCGGCGACTACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGGATTGGAGCTAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCAAATCTTGAGGGAATGGAAGGAGTGGTGAAGGATTATGTACGTGTTTGGAAAGGGAAGCGTGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCTGTTGAAGGTCGTCCACCTGTCAAATTTGTTGCTCATCTTAAGGAGGAAGAGTTTGAATACGTTTAA

Coding sequence (CDS)

ATGATTAGTATTGCGAACAGTATCGGCGTGATACCATCACCGGCTCCGTCGTCGGCGTCGATGGCTGCACGTTTTGCCTGTTCTATGACGGTATTCTCTACTGCTGATGTTAAATCTTCCTTTTCCTCATCCGTTTGTTCTCTATCGTCACTTGTTGTTAATCCTTTCAACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGATCAGATTCTGGAACTTCGCCTTCAGCTACCGCTGTTTCGGCGGCGACTACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGGATTGGAGCTAGAGTTAGGGTTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCAAATCTTGAGGGAATGGAAGGAGTGGTGAAGGATTATGTACGTGTTTGGAAAGGGAAGCGTGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCTGTTGAAGGTCGTCCACCTGTCAAATTTGTTGCTCATCTTAAGGAGGAAGAGTTTGAATACGTTTAA
Homology
[Close]
BLAST of CSPI05G20480 vs. Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1 

Query: 88  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 147
           A+  ++ EE   AAA +IG RVRV  PL+VYHV K PD +++GMEGVVK YV VWKGKRV
Sbjct: 3   ASDDVAAEEA--AAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRV 62

Query: 148 SANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV 182
           +AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Sbjct: 63  TANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFV 95

[Close]
BLAST of CSPI05G20480 vs. Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17
Identity = 66/175 (37.71%), Postives = 97/175 (55.43%), Query Frame = 1 

Query: 9   GVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGR-RLF 68
           GV    + ++AS A   A +         +++ S++VCS  +L       +  R R  + 
Sbjct: 4   GVAVMSSATAASTATATAAATARIPLFLSRNNSSATVCS--TLRCRTITRTRTRARLAIC 63

Query: 69  SEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDAN 128
            EV ++SDS T       S++++   E+E  +    ++G +V+VK PLKVYHV KLP+  
Sbjct: 64  CEVALKSDSSTGFD----SSSSSPPEEDEELKKNLEKVGCKVKVKSPLKVYHVPKLPEVE 123

Query: 129 L-EGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Sbjct: 124 LTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172

[Close]
BLAST of CSPI05G20480 vs. TrEMBL
Match: A0A0A0KV36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 9.0e-89
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 1 

Query: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60
           MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  RRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRRLFSEVPVRSDSGTS SATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180
           AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CSPI05G20480 vs. TrEMBL
Match: W9RQM9_9ROSA (Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_011027 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-34
Identity = 89/154 (57.79%), Postives = 109/154 (70.78%), Query Frame = 1 

Query: 35  ADVKSSF--SSSVCS-----LSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSA 94
           A +K SF  SSS CS     LS   ++PF  + RR RR+  EV ++SDS TSPS++  S 
Sbjct: 19  AAMKPSFISSSSSCSCLSVSLSPCKISPFATATRR-RRISCEVAIKSDSATSPSSSEFSE 78

Query: 95  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 154
           + +S      DE   ARIGARVRVKVPLKVYHV K+P+ ++ GMEG +K YV VWKGKR+
Sbjct: 79  SPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQYVGVWKGKRI 138

Query: 155 SANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 139 SANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CSPI05G20480 vs. TrEMBL
Match: A5B8T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.0e-31
Identity = 87/154 (56.49%), Postives = 108/154 (70.13%), Query Frame = 1 

Query: 33  STADVKSSFSSSVCSLSSL----VVNPFNCSIRRGRRLFS-EVPVRSDSGTSPSATAVSA 92
           ST  + SS SSS  S SSL    V +P +  + R RR  S EV +RSDS TS S    SA
Sbjct: 18  STNALVSSSSSSSSSSSSLDVCSVKSPSSAVVHRRRRTISCEVALRSDSATSSS----SA 77

Query: 93  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 152
           A   + E+  +EA   +IGARVRVKVPLKV+HV ++P+ +L GMEGV+K YV VWKGKR+
Sbjct: 78  AFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPEVDLTGMEGVLKQYVGVWKGKRI 137

Query: 153 SANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 138 SANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CSPI05G20480 vs. TrEMBL
Match: R0FH45_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.2e-29
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = 1 

Query: 34  TADVKSSFSSSVCSLSSLVVNPFNCSIRRGR------RLFSEVPVRSDSGTSPSATAVSA 93
           ++   +S +++  +L S VV P +    + R      R  S + +R D  T  SA +VS 
Sbjct: 25  SSSAATSTTTTPMALKSCVVAPLSLFTSKSRIKRSSSRTASRITIRCDVATK-SAESVSP 84

Query: 94  ATTSLSEEETDEAAA-ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKR 153
           +++  SEE+  EA A A+IG+RVRV  PLKVYHV ++P+ +LEGMEG +KDYV VWKGKR
Sbjct: 85  SSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVNRVPEVDLEGMEGKLKDYVSVWKGKR 144

Query: 154 VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           +SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 145 ISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

[Close]
BLAST of CSPI05G20480 vs. TrEMBL
Match: V4N5K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.0e-29
Identity = 78/156 (50.00%), Postives = 102/156 (65.38%), Query Frame = 1 

Query: 26  ACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAV 85
           +CS ++ +T  + +S+  S C++S    NP   +IRR   + S   V +D  T  S    
Sbjct: 39  SCS-SIVATISLSTSYGRSKCAISISRKNP-RSTIRRDITVKSAASVDADLSTPAS---- 98

Query: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGK 145
                  SE E DE A A+IGARVRV VPLKVYHV ++P+  L GMEG +KDYV +WKGK
Sbjct: 99  -------SETEEDEKAKAKIGARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGK 158

Query: 146 RVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           R+SANLPYKV+FV  +EGR PVKF  HLKE+EFE++
Sbjct: 159 RISANLPYKVQFVKEIEGRGPVKFFTHLKEDEFEFL 181

[Close]
BLAST of CSPI05G20480 vs. TAIR10
Match: AT5G08410.1 (AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-29
Identity = 75/154 (48.70%), Postives = 101/154 (65.58%), Query Frame = 1 

Query: 28  SMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSA 87
           S ++F    + +S+  S C+ S    NP   +IR       ++ V+S    S  A A  +
Sbjct: 39  SSSIFVPISLSTSYGRSKCAFSISRKNP-KSTIR------CDIAVKS--AASVDADADLS 98

Query: 88  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 147
           ++TSL  EE DE A  +IGARVRV VPLKVYHV ++P+  L GMEG +KDYV +WKGK++
Sbjct: 99  SSTSLETEE-DEKAKEKIGARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGKKI 158

Query: 148 SANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Sbjct: 159 SANLPFKVQFVKEIEGRGPVKFFTHLKEDEFELI 182

[Close]
BLAST of CSPI05G20480 vs. TAIR10
Match: AT5G23440.1 (AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-29
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1 

Query: 59  SIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVY 118
           S R+  R      V   S  S +A A  +++ S SEEE +  A A+IG+RVRV  PLKVY
Sbjct: 59  SSRKTSRTTIRCDVAIKSADSINADANPSSSPS-SEEEIEAEAKAKIGSRVRVTAPLKVY 118

Query: 119 HVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEF 178
           HV ++P+ +LEGMEG +KDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+EF
Sbjct: 119 HVNRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKIEFFKEIEGRGLVKFVSHLKEDEF 178

Query: 179 EYV 182
           E++
Sbjct: 179 EFI 180

[Close]
BLAST of CSPI05G20480 vs. NCBI nr
Match: gi|449458714|ref|XP_004147092.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 1.3e-88
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 1 

Query: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60
           MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  RRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRRLFSEVPVRSDSGTS SATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180
           AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CSPI05G20480 vs. NCBI nr
Match: gi|659090253|ref|XP_008445916.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 4.8e-83
Identity = 167/181 (92.27%), Postives = 176/181 (97.24%), Query Frame = 1 

Query: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60
           MI IANSIG++P P PSSAS+AARFACSMTVFST+DV+SSFSSSVCSLSS+VVNPFNCSI
Sbjct: 1   MIGIANSIGLMPPPVPSSASVAARFACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSI 60

Query: 61  RRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120
           RRGRRLFSEV VRSDSGTS SATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVSVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180
           AKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEY
Sbjct: 121 AKLPEANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPIKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CSPI05G20480 vs. NCBI nr
Match: gi|703132722|ref|XP_010105193.1| (Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis])

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-34
Identity = 89/154 (57.79%), Postives = 109/154 (70.78%), Query Frame = 1 

Query: 35  ADVKSSF--SSSVCS-----LSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSA 94
           A +K SF  SSS CS     LS   ++PF  + RR RR+  EV ++SDS TSPS++  S 
Sbjct: 19  AAMKPSFISSSSSCSCLSVSLSPCKISPFATATRR-RRISCEVAIKSDSATSPSSSEFSE 78

Query: 95  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 154
           + +S      DE   ARIGARVRVKVPLKVYHV K+P+ ++ GMEG +K YV VWKGKR+
Sbjct: 79  SPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQYVGVWKGKRI 138

Query: 155 SANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 139 SANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CSPI05G20480 vs. NCBI nr
Match: gi|225463817|ref|XP_002271306.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31
Identity = 87/154 (56.49%), Postives = 108/154 (70.13%), Query Frame = 1 

Query: 33  STADVKSSFSSSVCSLSSL----VVNPFNCSIRRGRRLFS-EVPVRSDSGTSPSATAVSA 92
           ST  + SS SSS  S SSL    V +P +  + R RR  S EV +RSDS TS S    SA
Sbjct: 18  STNALVSSSSSSSSSSSSLDVCSVKSPSSAVVHRRRRTISCEVALRSDSATSSS----SA 77

Query: 93  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRV 152
           A   + E+  +EA   +IGARVRVKVPLKV+HV ++P+ +L GMEGV+K YV VWKGKR+
Sbjct: 78  AFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPEVDLTGMEGVLKQYVGVWKGKRI 137

Query: 153 SANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 182
           SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 138 SANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CSPI05G20480 vs. NCBI nr
Match: gi|720065061|ref|XP_010276155.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nelumbo nucifera])

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29
Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 62  RGRRLFSEVPVRSDSGT----SPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKV 121
           R R +  E+ ++ DS T    SPS+++ S A+ S +  E +E++ A+IGARVRVKVPLKV
Sbjct: 54  RQRVISCEIALKPDSATVDASSPSSSSASVASASSAAAEEEESSLAKIGARVRVKVPLKV 113

Query: 122 YHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE 181
           YH+ K+P+ +L GMEG +K YV +WKG R+SANLP+KVEFV  +EGR  VKF AHLKE+E
Sbjct: 114 YHIPKVPEFDLTGMEGELKQYVGLWKGNRISANLPFKVEFVTKIEGRGTVKFFAHLKEDE 173

The following BLAST results are available for this feature:
BLAST of CSPI05G20480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FTRV_MAIZE4.5e-2562.11Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1[more]
FTRV_SPIOL3.5e-1737.71Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oler... [more]
BLAST of CSPI05G20480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV36_CUCSA9.0e-8999.45Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1[more]
W9RQM9_9ROSA6.3e-3457.79Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_0110... [more]
A5B8T4_VITVI5.0e-3156.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=... [more]
R0FH45_9BRAS6.2e-2950.32Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1[more]
V4N5K8_EUTSA8.0e-2950.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1[more]
BLAST of CSPI05G20480 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08410.14.2e-2948.70 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2[more]
AT5G23440.15.5e-2955.28 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1[more]
BLAST of CSPI05G20480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458714|ref|XP_004147092.1|1.3e-8899.45PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus][more]
gi|659090253|ref|XP_008445916.1|4.8e-8392.27PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo][more]
gi|703132722|ref|XP_010105193.1|9.1e-3457.79Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis][more]
gi|225463817|ref|XP_002271306.1|7.2e-3156.49PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera][more]
gi|720065061|ref|XP_010276155.1|6.8e-2956.45PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nelumbo nucife... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003698Lipoyl_synth
IPR004207Fd_thioredoxin_Rdtase_alpha
IPR008990Elect_transpt_acc-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0016992lipoate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009107lipoate biosynthetic process
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G20480.1CSPI05G20480.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003698Lipoyl synthasePANTHERPTHR10949LIPOYL SYNTHASEcoord: 90..181
score: 3.4
IPR004207Ferredoxin thioredoxin reductase, alpha chainPRODOMPD015034coord: 114..181
score: 9.0
IPR004207Ferredoxin thioredoxin reductase, alpha chainPFAMPF02941FeThRed_Acoord: 105..177
score: 5.0
IPR008990Electron transport accessory protein-like domainunknownSSF50090Electron transport accessory proteinscoord: 104..180
score: 4.59
NoneNo IPR availableGENE3DG3DSA:2.30.30.50coord: 104..181
score: 1.0
NoneNo IPR availablePANTHERPTHR10949:SF11SUBFAMILY NOT NAMEDcoord: 90..181
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G20480Cla022889Watermelon (97103) v1cpiwmB444
CSPI05G20480Csa5G580660Cucumber (Chinese Long) v2cpicuB239
CSPI05G20480MELO3C011775Melon (DHL92) v3.5.1cpimeB369
CSPI05G20480ClCG11G012840Watermelon (Charleston Gray)cpiwcgB369
CSPI05G20480Lsi04G007630Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G20480MELO3C011776.2Melon (DHL92) v3.6.1cpimedB363
CSPI05G20480CsaV3_5G029240Cucumber (Chinese Long) v3cpicucB284
CSPI05G20480Cla97C11G218730Watermelon (97103) v2cpiwmbB373
CSPI05G20480Bhi07G000943Wax gourdcpiwgoB507
CSPI05G20480Cucsa.281120Cucumber (Gy14) v1cgycpiB421
CSPI05G20480CmaCh04G012800Cucurbita maxima (Rimu)cmacpiB733
CSPI05G20480CmaCh18G008380Cucurbita maxima (Rimu)cmacpiB424
CSPI05G20480CmoCh04G013490Cucurbita moschata (Rifu)cmocpiB725
CSPI05G20480Cp4.1LG01g09950Cucurbita pepo (Zucchini)cpecpiB417
CSPI05G20480CsGy5G020000Cucumber (Gy14) v2cgybcpiB225
CSPI05G20480Carg02037Silver-seed gourdcarcpiB0881
CSPI05G20480Carg14427Silver-seed gourdcarcpiB0757
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G20480Melon (DHL92) v3.6.1cpimedB361
CSPI05G20480Silver-seed gourdcarcpiB0760
CSPI05G20480Cucumber (Chinese Long) v3cpicucB297
CSPI05G20480Cucumber (Gy14) v1cgycpiB075
CSPI05G20480Cucurbita maxima (Rimu)cmacpiB420
CSPI05G20480Cucurbita moschata (Rifu)cmocpiB408
CSPI05G20480Cucurbita moschata (Rifu)cmocpiB413
CSPI05G20480Cucurbita pepo (Zucchini)cpecpiB037
CSPI05G20480Cucurbita pepo (Zucchini)cpecpiB043