CmaCh04G012800 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionFerredoxin-thioredoxin reductase, variable chain
LocationCma_Chr04 : 6536741 .. 6537274 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTATGGCGAATAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCTCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGATGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAATGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

ATGATCACTATGGCGAATAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCTCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGATGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAATGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Coding sequence (CDS)

ATGATCACTATGGCGAATAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTATTCCTCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTCAAATCAGATTCCGGTACTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGATGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCTTTGAATGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

Protein sequence

MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Homology
[Close]
BLAST of CmaCh04G012800 vs. Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 94  DEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEF 153
           + AAA +IG RVRV  PL VYHV K P+ D++GMEGV+K YV VWKGKRV+AN P+KVEF
Sbjct: 11  EAAAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEF 70

Query: 154 VVPVEGRP-PVKFVAHLKEEEFEYV 178
            + VEG+P PV+F AHL+E+EFE+V
Sbjct: 71  ELAVEGQPKPVRFFAHLREDEFEFV 95

[Close]
BLAST of CmaCh04G012800 vs. Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 1 

Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR-RF 63
           M   + V+ +    +   A +        F S  +SS +  S++       + TR R   
Sbjct: 1   MTTGVAVMSSATAASTATATAAATARIPLFLSRNNSSATVCSTLRCRTITRTRTRARLAI 60

Query: 64  FSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPEA 123
             EV +KSDS T   +++ S       EDE  +    ++G +V+VK PL VYHV KLPE 
Sbjct: 61  CCEVALKSDSSTGFDSSSSSPP----EEDEELKKNLEKVGCKVKVKSPLKVYHVPKLPEV 120

Query: 124 DL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           +L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Sbjct: 121 ELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172

[Close]
BLAST of CmaCh04G012800 vs. TrEMBL
Match: A0A0A0KV36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.0e-73
Identity = 154/181 (85.08%), Postives = 166/181 (91.71%), Query Frame = 1 

Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+SSSV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHV 120
            RGRR FSEV V+SDSGT SSA AVSAA TSLSE+ETDEAAAARIGARVRVKVPL VYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]
BLAST of CmaCh04G012800 vs. TrEMBL
Match: W9RQM9_9ROSA (Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_011027 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.9e-33
Identity = 91/164 (55.49%), Postives = 106/164 (64.63%), Query Frame = 1 

Query: 27  VFSSTD-------FKSSYSSSVSSLSSVVVNPFNCSI------TRGRRFFSEVTVKSDSG 86
           + SSTD        K S+ SS SS S + V+   C I      TR RR   EV +KSDS 
Sbjct: 8   LLSSTDHAMILAAMKPSFISSSSSCSCLSVSLSPCKISPFATATRRRRISCEVAIKSDSA 67

Query: 87  TLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKD 146
           T  S++  S + +S      DE   ARIGARVRVKVPL VYHV K+PE D+ GMEG LK 
Sbjct: 68  TSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQ 127

Query: 147 YVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           YV VWKGKR+SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 128 YVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CmaCh04G012800 vs. TrEMBL
Match: A5B8T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 91/176 (51.70%), Postives = 112/176 (63.64%), Query Frame = 1 

Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSS----SVSSLSSVVVNPFNCSITRGRR 65
           N++      +P   R + +  V SS+   SS SS    SV S SS VV+       R R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPL V+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CmaCh04G012800 vs. TrEMBL
Match: R0FH45_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.1e-30
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 1 

Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ ++ ++ L S VV P +   ++ R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVA 123
              R  S +T++ D  T S+ +   ++  S  ED+ +  A A+IG+RVRV  PL VYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

[Close]
BLAST of CmaCh04G012800 vs. TrEMBL
Match: V4N5K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.8e-29
Identity = 88/180 (48.89%), Postives = 117/180 (65.00%), Query Frame = 1 

Query: 9   GVIPTPAPTAA-RPACSMTVFSSTDF---KSSYSSSVSSLSSVV-----VNPFNCSITRG 68
           G   +PA  AA RP  S   FS+      K+ Y+SS SS+ + +          C+I+  
Sbjct: 4   GFAVSPAIVAAVRPPASQDCFSAVSVNGPKAIYASSCSSIVATISLSTSYGRSKCAISIS 63

Query: 69  RRFFSEVTVKSDSGTLSSAAAVSAAMTS--LSEDETDEAAAARIGARVRVKVPLNVYHVA 128
           R+     T++ D  T+ SAA+V A +++   SE E DE A A+IGARVRV VPL VYHV 
Sbjct: 64  RKN-PRSTIRRDI-TVKSAASVDADLSTPASSETEEDEKAKAKIGARVRVTVPLKVYHVV 123

Query: 129 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE +L GMEG +KDYV +WKGKR+SANLPYKV+FV  +EGR PVKF  HLKE+EFE++
Sbjct: 124 RVPEVELMGMEGFIKDYVVLWKGKRISANLPYKVQFVKEIEGRGPVKFFTHLKEDEFEFL 181

[Close]
BLAST of CmaCh04G012800 vs. TAIR10
Match: AT5G23440.1 (AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)

HSP 1 Score: 124.8 bits (312), Expect = 5.3e-29
Identity = 78/184 (42.39%), Postives = 116/184 (63.04%), Query Frame = 1 

Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--- 63
           M++ I + P  A    RP+    + +S    ++ +++  +L S +V P +   ++ +   
Sbjct: 1   MSSQIALSPAIAAAIRRPSSHDCLSASA---TTATATPMALKSCIVAPLSLFTSQSQIKH 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSA----AMTSLSEDETDEAAAARIGARVRVKVPLNV 123
              R  S  T++ D   + SA +++A    + +  SE+E +  A A+IG+RVRV  PL V
Sbjct: 61  SSSRKTSRTTIRCDVA-IKSADSINADANPSSSPSSEEEIEAEAKAKIGSRVRVTAPLKV 120

Query: 124 YHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE 178
           YHV ++PE DLEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+E
Sbjct: 121 YHVNRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKIEFFKEIEGRGLVKFVSHLKEDE 180

[Close]
BLAST of CmaCh04G012800 vs. TAIR10
Match: AT5G08410.1 (AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 82/185 (44.32%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--- 63
           M NS  + P     A RP  S     +     S   S++S SS +  P + S + GR   
Sbjct: 1   MTNSYALSPAII-AAVRPPASQDYLVAASL--SGRKSINSSSSSIFVPISLSTSYGRSKC 60

Query: 64  -----RFFSEVTVKSDSGTLSSAAAVSAAMTSLS---EDETDEAAAARIGARVRVKVPLN 123
                R   + T++ D    S+A+  + A  S S   E E DE A  +IGARVRV VPL 
Sbjct: 61  AFSISRKNPKSTIRCDIAVKSAASVDADADLSSSTSLETEEDEKAKEKIGARVRVTVPLK 120

Query: 124 VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEE 178
           VYHV ++PE +L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+
Sbjct: 121 VYHVVRVPEVELMGMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRGPVKFFTHLKED 180

[Close]
BLAST of CmaCh04G012800 vs. NCBI nr
Match: gi|449458714|ref|XP_004147092.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.3e-73
Identity = 154/181 (85.08%), Postives = 166/181 (91.71%), Query Frame = 1 

Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSI 60
           MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+SSSV SLSS+VVNPFNCSI
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHV 120
            RGRR FSEV V+SDSGT SSA AVSAA TSLSE+ETDEAAAARIGARVRVKVPL VYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

[Close]
BLAST of CmaCh04G012800 vs. NCBI nr
Match: gi|659090253|ref|XP_008445916.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.8e-72
Identity = 152/181 (83.98%), Postives = 165/181 (91.16%), Query Frame = 1 

Query: 1   MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSI 60
           MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+SSSV SLSSVVVNPFNCSI
Sbjct: 1   MIGIANSIGLMPPPVPSSASVAARFACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSI 60

Query: 61  TRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHV 120
            RGRR FSEV+V+SDSGT SSA AVSAA TSLSE+ETDEAAAARIGARVRVKVPL VYHV
Sbjct: 61  RRGRRLFSEVSVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 178
           AKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEY
Sbjct: 121 AKLPEANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPIKFVAHLKEEEFEY 180

[Close]
BLAST of CmaCh04G012800 vs. NCBI nr
Match: gi|703132722|ref|XP_010105193.1| (Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis])

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 91/164 (55.49%), Postives = 106/164 (64.63%), Query Frame = 1 

Query: 27  VFSSTD-------FKSSYSSSVSSLSSVVVNPFNCSI------TRGRRFFSEVTVKSDSG 86
           + SSTD        K S+ SS SS S + V+   C I      TR RR   EV +KSDS 
Sbjct: 8   LLSSTDHAMILAAMKPSFISSSSSCSCLSVSLSPCKISPFATATRRRRISCEVAIKSDSA 67

Query: 87  TLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKD 146
           T  S++  S + +S      DE   ARIGARVRVKVPL VYHV K+PE D+ GMEG LK 
Sbjct: 68  TSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPEIDILGMEGELKQ 127

Query: 147 YVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           YV VWKGKR+SANLPYKV+F+  VEGR  VKF AHLKE+EFEYV
Sbjct: 128 YVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CmaCh04G012800 vs. NCBI nr
Match: gi|225463817|ref|XP_002271306.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera])

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-31
Identity = 91/176 (51.70%), Postives = 112/176 (63.64%), Query Frame = 1 

Query: 6   NSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSS----SVSSLSSVVVNPFNCSITRGRR 65
           N++      +P   R + +  V SS+   SS SS    SV S SS VV+       R R 
Sbjct: 2   NALAFFSASSPLNLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVH------RRRRT 61

Query: 66  FFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVAKLPE 125
              EV ++SDS T SS    SAA   + ED  +EA   +IGARVRVKVPL V+HV ++PE
Sbjct: 62  ISCEVALRSDSATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPE 121

Query: 126 ADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
            DL GMEGVLK YV VWKGKR+SANLP+K+ FV  +EGR PVKF AHLK++EFEYV
Sbjct: 122 VDLTGMEGVLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CmaCh04G012800 vs. NCBI nr
Match: gi|565461520|ref|XP_006288759.1| (hypothetical protein CARUB_v10002077mg [Capsella rubella])

HSP 1 Score: 139.4 bits (350), Expect = 5.9e-30
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 1 

Query: 4   MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--- 63
           M+N++ + P     A RP  S    SS+   S+ ++ ++ L S VV P +   ++ R   
Sbjct: 1   MSNTMALSPAIV-AAVRPPYSHDGLSSSAATSTTTTPMA-LKSCVVAPLSLFTSKSRIKR 60

Query: 64  ---RFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVPLNVYHVA 123
              R  S +T++ D  T S+ +   ++  S  ED+ +  A A+IG+RVRV  PL VYHV 
Sbjct: 61  SSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKVYHVN 120

Query: 124 KLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV 178
           ++PE DLEGMEG LKDYV VWKGKR+SANLPYKVEF   +EGR PVKFVAHLK++EFE++
Sbjct: 121 RVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDEFEFI 178

The following BLAST results are available for this feature:
BLAST of CmaCh04G012800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FTRV_MAIZE5.8e-2564.71Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1[more]
FTRV_SPIOL1.2e-1737.50Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oler... [more]
BLAST of CmaCh04G012800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV36_CUCSA3.0e-7385.08Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1[more]
W9RQM9_9ROSA8.9e-3355.49Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_0110... [more]
A5B8T4_VITVI3.7e-3151.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=... [more]
R0FH45_9BRAS4.1e-3046.67Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1[more]
V4N5K8_EUTSA7.8e-2948.89Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014787mg PE=4 SV=1[more]
BLAST of CmaCh04G012800 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23440.15.3e-2942.39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1[more]
AT5G08410.11.6e-2844.32 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2[more]
BLAST of CmaCh04G012800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458714|ref|XP_004147092.1|4.3e-7385.08PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus][more]
gi|659090253|ref|XP_008445916.1|2.8e-7283.98PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo][more]
gi|703132722|ref|XP_010105193.1|1.3e-3255.49Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis][more]
gi|225463817|ref|XP_002271306.1|5.4e-3151.70PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera][more]
gi|565461520|ref|XP_006288759.1|5.9e-3046.67hypothetical protein CARUB_v10002077mg [Capsella rubella][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003698Lipoyl_synth
IPR004207Fd_thioredoxin_Rdtase_alpha
IPR008990Elect_transpt_acc-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0016992lipoate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009107lipoate biosynthetic process
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012800.1CmaCh04G012800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003698Lipoyl synthasePANTHERPTHR10949LIPOYL SYNTHASEcoord: 82..177
score: 1.3
IPR004207Ferredoxin thioredoxin reductase, alpha chainPRODOMPD015034coord: 110..177
score: 2.0
IPR004207Ferredoxin thioredoxin reductase, alpha chainPFAMPF02941FeThRed_Acoord: 101..173
score: 5.0
IPR008990Electron transport accessory protein-like domainunknownSSF50090Electron transport accessory proteinscoord: 100..176
score: 1.07
NoneNo IPR availableGENE3DG3DSA:2.30.30.50coord: 100..177
score: 1.3
NoneNo IPR availablePANTHERPTHR10949:SF11SUBFAMILY NOT NAMEDcoord: 82..177
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G012800Cucsa.281120Cucumber (Gy14) v1cgycmaB0779
CmaCh04G012800Cla022889Watermelon (97103) v1cmawmB728
CmaCh04G012800Csa5G580660Cucumber (Chinese Long) v2cmacuB726
CmaCh04G012800MELO3C011775Melon (DHL92) v3.5.1cmameB652
CmaCh04G012800ClCG11G012840Watermelon (Charleston Gray)cmawcgB621
CmaCh04G012800CSPI05G20480Wild cucumber (PI 183967)cmacpiB733
CmaCh04G012800CmoCh04G013490Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012800Lsi04G007630Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G012800Cp4.1LG01g09950Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012800MELO3C011776.2Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012800CsaV3_5G029240Cucumber (Chinese Long) v3cmacucB0863
CmaCh04G012800Cla97C11G218730Watermelon (97103) v2cmawmbB725
CmaCh04G012800Bhi07G000943Wax gourdcmawgoB0892
CmaCh04G012800CsGy5G020000Cucumber (Gy14) v2cgybcmaB650
CmaCh04G012800Carg02037Silver-seed gourdcarcmaB1170
CmaCh04G012800Carg14427Silver-seed gourdcarcmaB1014
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G012800CmaCh18G008380Cucurbita maxima (Rimu)cmacmaB407
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012800Silver-seed gourdcarcmaB1015
CmaCh04G012800Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G012800Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G012800Cucurbita moschata (Rifu)cmacmoB713
CmaCh04G012800Melon (DHL92) v3.5.1cmameB633
CmaCh04G012800Cucurbita pepo (Zucchini)cmacpeB697
CmaCh04G012800Cucurbita pepo (Zucchini)cmacpeB700