CmaCh18G008380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G008380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionFerredoxin-thioredoxin reductase, variable chain
LocationCma_Chr18 : 7326404 .. 7326949 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGTATTGCAAGCAGTGTCGGCGTGATACCATCCCCGGTGACGGCGTCAGCGTCGGCGGCCTCTCGTCCCACCTGTTCTCTGACGGTAGCCACTAGTGTTGATGTCAAATCGTCCTATTCCTCGTCTGTTAGTTCTCTATCGTCAGTTGTTGCTAATCCTTTCAACTGCTTGATTGGAAGAGGGAGAAGAGTTTGTAGCGAGGTTACAGTCAAATCAGATTCCAGAGGTTCCTCTTCTGCTACTGTTGTTTCGGCGGCGGCGACGTCATTGTCTGAGGAGGAGACTGGCGAAGCGGCTGCTACTAGAATTGGAGCGAAAGTTAGGGTTAAGGTACCTTTGAAGGTGTATCATGTAGCTAAGTTGCCGGAGGCAAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGCGTTTGGAAGGGTAAACATGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTTGAAGGCCGGCCTCCGGTCAAATTCGTTGCTCATCTCAAGGAGGATGAATTTGAATACGTTTAA

mRNA sequence

ATGATCAGTATTGCAAGCAGTGTCGGCGTGATACCATCCCCGGTGACGGCGTCAGCGTCGGCGGCCTCTCGTCCCACCTGTTCTCTGACGGTAGCCACTAGTGTTGATGTCAAATCGTCCTATTCCTCGTCTGTTAGTTCTCTATCGTCAGTTGTTGCTAATCCTTTCAACTGCTTGATTGGAAGAGGGAGAAGAGTTTGTAGCGAGGTTACAGTCAAATCAGATTCCAGAGGTTCCTCTTCTGCTACTGTTGTTTCGGCGGCGGCGACGTCATTGTCTGAGGAGGAGACTGGCGAAGCGGCTGCTACTAGAATTGGAGCGAAAGTTAGGGTTAAGGTACCTTTGAAGGTGTATCATGTAGCTAAGTTGCCGGAGGCAAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGCGTTTGGAAGGGTAAACATGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTTGAAGGCCGGCCTCCGGTCAAATTCGTTGCTCATCTCAAGGAGGATGAATTTGAATACGTTTAA

Coding sequence (CDS)

ATGATCAGTATTGCAAGCAGTGTCGGCGTGATACCATCCCCGGTGACGGCGTCAGCGTCGGCGGCCTCTCGTCCCACCTGTTCTCTGACGGTAGCCACTAGTGTTGATGTCAAATCGTCCTATTCCTCGTCTGTTAGTTCTCTATCGTCAGTTGTTGCTAATCCTTTCAACTGCTTGATTGGAAGAGGGAGAAGAGTTTGTAGCGAGGTTACAGTCAAATCAGATTCCAGAGGTTCCTCTTCTGCTACTGTTGTTTCGGCGGCGGCGACGTCATTGTCTGAGGAGGAGACTGGCGAAGCGGCTGCTACTAGAATTGGAGCGAAAGTTAGGGTTAAGGTACCTTTGAAGGTGTATCATGTAGCTAAGTTGCCGGAGGCAAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGCGTTTGGAAGGGTAAACATGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTTGAAGGCCGGCCTCCGGTCAAATTCGTTGCTCATCTCAAGGAGGATGAATTTGAATACGTTTAA

Protein sequence

MISIASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRGRRVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Homology
[Close]
BLAST of CmaCh18G008380 vs. Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 88  AATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHV 147
           A+  ++ EE   AAA +IG +VRV  PL+VYHV K P+ +++GMEGV+K YV VWKGK V
Sbjct: 3   ASDDVAAEEA--AAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRV 62

Query: 148 SANLPYKVEFVVPVEGRP-PVKFVAHLKEDEFEYV 182
           +AN P+KVEF + VEG+P PV+F AHL+EDEFE+V
Sbjct: 63  TANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFV 95

[Close]
BLAST of CmaCh18G008380 vs. Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 71/174 (40.80%), Postives = 99/174 (56.90%), Query Frame = 1 

Query: 15  VTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNC-LIGRGRR-----VCS 74
           V +SA+AAS  T +      + +  S ++S    S+ V +   C  I R R      +C 
Sbjct: 7   VMSSATAASTATATAAATARIPLFLSRNNS----SATVCSTLRCRTITRTRTRARLAICC 66

Query: 75  EVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANL 134
           EV +KSDS    S    S++++   E+E  +    ++G KV+VK PLKVYHV KLPE  L
Sbjct: 67  EVALKSDS----STGFDSSSSSPPEEDEELKKNLEKVGCKVKVKSPLKVYHVPKLPEVEL 126

Query: 135 -EGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
              M GV+K YV  WKGK++S N P+KVE+ + V  R  VK V HLKE+EFE +
Sbjct: 127 TPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172

[Close]
BLAST of CmaCh18G008380 vs. TrEMBL
Match: A0A0A0KV36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.7e-68
Identity = 146/181 (80.66%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MISIASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLI 60
           MISIA+S+GVIPSP  +SAS A+R  CS+TV ++ DVKSS+SSSV SLSS+V NPFNC I
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  GRGRRVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHV 120
            RGRR+ SEV V+SDS  SSSAT VSAA TSLSEEET EAAA RIGA+VRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEY 180
           AKLP+ANLEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CmaCh18G008380 vs. TrEMBL
Match: A5B8T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-29
Identity = 90/165 (54.55%), Postives = 113/165 (68.48%), Query Frame = 1 

Query: 21  AASRPTCSLTVATSVDVKSSYSSSVSSLS---SVVANPFNCLIGRGRRVCS-EVTVKSDS 80
           +AS P  +L  +T+  V SS SSS SS S     V +P + ++ R RR  S EV ++SDS
Sbjct: 8   SASSPL-NLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVHRRRRTISCEVALRSDS 67

Query: 81  RGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLK 140
             SSS    SAA   + E+   EA   +IGA+VRVKVPLKV+HV ++PE +L GMEGVLK
Sbjct: 68  ATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPEVDLTGMEGVLK 127

Query: 141 DYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
            YV VWKGK +SANLP+K+ FV  +EGR PVKF AHLK+DEFEYV
Sbjct: 128 QYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CmaCh18G008380 vs. TrEMBL
Match: W9RQM9_9ROSA (Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_011027 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-29
Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 1 

Query: 6   SSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRGRR 65
           ++VG++ S   A   AA +P+        +   SS S    SLS    +PF     R RR
Sbjct: 4   ATVGLLSSTDHAMILAAMKPSF-------ISSSSSCSCLSVSLSPCKISPF-ATATRRRR 63

Query: 66  VCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPE 125
           +  EV +KSDS  S S++  S + +S       E    RIGA+VRVKVPLKVYHV K+PE
Sbjct: 64  ISCEVAIKSDSATSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPE 123

Query: 126 ANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
            ++ GMEG LK YV VWKGK +SANLPYKV+F+  VEGR  VKF AHLKEDEFEYV
Sbjct: 124 IDILGMEGELKQYVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CmaCh18G008380 vs. TrEMBL
Match: A8IXL0_BRACM (Lipoic acid synthase-like protein OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.4e-27
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 65  RVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLP 124
           R  S +TV+ D   + +A  V+A  T LSEEE    A  ++G+ +RV  PLKVYHV ++P
Sbjct: 40  RRASTMTVRCDV-ATKTADSVNAEETELSEEEM--EAKAKVGSSIRVTAPLKVYHVNRVP 99

Query: 125 EANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
           E +LEGMEG LKDYV VWKGK +SANLPYKVEF   VEGR PVKFVAHLK+DEFE++
Sbjct: 100 EVDLEGMEGKLKDYVAVWKGKRISANLPYKVEFFKEVEGRGPVKFVAHLKDDEFEFI 153

[Close]
BLAST of CmaCh18G008380 vs. TrEMBL
Match: R0FH45_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 78/184 (42.39%), Postives = 113/184 (61.41%), Query Frame = 1 

Query: 4   IASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRG 63
           +++++ + P+ V A     S    S + ATS       +++  +L S V  P +    + 
Sbjct: 1   MSNTMALSPAIVAAVRPPYSHDGLSSSAATST------TTTPMALKSCVVAPLSLFTSKS 60

Query: 64  R------RVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKV 123
           R      R  S +T++ D    S+ +V  +++ S  E++    A  +IG++VRV  PLKV
Sbjct: 61  RIKRSSSRTASRITIRCDVATKSAESVSPSSSPSSEEDKIEAEAKAKIGSRVRVTAPLKV 120

Query: 124 YHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDE 182
           YHV ++PE +LEGMEG LKDYV VWKGK +SANLPYKVEF   +EGR PVKFVAHLK+DE
Sbjct: 121 YHVNRVPEVDLEGMEGKLKDYVSVWKGKRISANLPYKVEFFKEIEGRGPVKFVAHLKDDE 178

[Close]
BLAST of CmaCh18G008380 vs. TAIR10
Match: AT5G08410.1 (AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-28
Identity = 79/172 (45.93%), Postives = 103/172 (59.88%), Query Frame = 1 

Query: 21  AASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRGRRVCS--------EVTV 80
           AA RP  S     +  +  S   S++S SS +  P +     GR  C+        + T+
Sbjct: 13  AAVRPPASQDYLVAASL--SGRKSINSSSSSIFVPISLSTSYGRSKCAFSISRKNPKSTI 72

Query: 81  KSDSRGSSSATVVSAAATSLS---EEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLE 140
           + D    S+A+V + A  S S   E E  E A  +IGA+VRV VPLKVYHV ++PE  L 
Sbjct: 73  RCDIAVKSAASVDADADLSSSTSLETEEDEKAKEKIGARVRVTVPLKVYHVVRVPEVELM 132

Query: 141 GMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
           GMEG +KDYV +WKGK +SANLP+KV+FV  +EGR PVKF  HLKEDEFE +
Sbjct: 133 GMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRGPVKFFTHLKEDEFELI 182

[Close]
BLAST of CmaCh18G008380 vs. TAIR10
Match: AT5G23440.1 (AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-26
Identity = 72/181 (39.78%), Postives = 107/181 (59.12%), Query Frame = 1 

Query: 4   IASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRG 63
           ++S + + P+   A    +S    S +  T+     +  S + +  S+  +         
Sbjct: 1   MSSQIALSPAIAAAIRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQSQIKHSSS 60

Query: 64  RRVCSEVTVKSDSRGSSSATV---VSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHV 123
           R+  S  T++ D    S+ ++    + +++  SEEE    A  +IG++VRV  PLKVYHV
Sbjct: 61  RKT-SRTTIRCDVAIKSADSINADANPSSSPSSEEEIEAEAKAKIGSRVRVTAPLKVYHV 120

Query: 124 AKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEY 182
            ++PE +LEGMEG LKDYV VWKGK +SANLPYK+EF   +EGR  VKFV+HLKEDEFE+
Sbjct: 121 NRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKIEFFKEIEGRGLVKFVSHLKEDEFEF 180

[Close]
BLAST of CmaCh18G008380 vs. NCBI nr
Match: gi|449458714|ref|XP_004147092.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 9.6e-68
Identity = 146/181 (80.66%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MISIASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLI 60
           MISIA+S+GVIPSP  +SAS A+R  CS+TV ++ DVKSS+SSSV SLSS+V NPFNC I
Sbjct: 1   MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSI 60

Query: 61  GRGRRVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHV 120
            RGRR+ SEV V+SDS  SSSAT VSAA TSLSEEET EAAA RIGA+VRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEY 180
           AKLP+ANLEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEY
Sbjct: 121 AKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CmaCh18G008380 vs. NCBI nr
Match: gi|659090253|ref|XP_008445916.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 3.6e-67
Identity = 144/181 (79.56%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MISIASSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLI 60
           MI IA+S+G++P PV +SAS A+R  CS+TV ++ DV+SS+SSSV SLSSVV NPFNC I
Sbjct: 1   MIGIANSIGLMPPPVPSSASVAARFACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSI 60

Query: 61  GRGRRVCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHV 120
            RGRR+ SEV+V+SDS  SSSAT VSAA TSLSEEET EAAA RIGA+VRVKVPLKVYHV
Sbjct: 61  RRGRRLFSEVSVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHV 120

Query: 121 AKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEY 180
           AKLPEANLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPP+KFVAHLKE+EFEY
Sbjct: 121 AKLPEANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPIKFVAHLKEEEFEY 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]
BLAST of CmaCh18G008380 vs. NCBI nr
Match: gi|225463817|ref|XP_002271306.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 5.1e-29
Identity = 90/165 (54.55%), Postives = 113/165 (68.48%), Query Frame = 1 

Query: 21  AASRPTCSLTVATSVDVKSSYSSSVSSLS---SVVANPFNCLIGRGRRVCS-EVTVKSDS 80
           +AS P  +L  +T+  V SS SSS SS S     V +P + ++ R RR  S EV ++SDS
Sbjct: 8   SASSPL-NLRRSTNALVSSSSSSSSSSSSLDVCSVKSPSSAVVHRRRRTISCEVALRSDS 67

Query: 81  RGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLK 140
             SSS    SAA   + E+   EA   +IGA+VRVKVPLKV+HV ++PE +L GMEGVLK
Sbjct: 68  ATSSS----SAAFEQVQEDAAEEAG--KIGARVRVKVPLKVFHVPRVPEVDLTGMEGVLK 127

Query: 141 DYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
            YV VWKGK +SANLP+K+ FV  +EGR PVKF AHLK+DEFEYV
Sbjct: 128 QYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFEYV 165

[Close]
BLAST of CmaCh18G008380 vs. NCBI nr
Match: gi|703132722|ref|XP_010105193.1| (Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis])

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 1 

Query: 6   SSVGVIPSPVTASASAASRPTCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRGRR 65
           ++VG++ S   A   AA +P+        +   SS S    SLS    +PF     R RR
Sbjct: 4   ATVGLLSSTDHAMILAAMKPSF-------ISSSSSCSCLSVSLSPCKISPF-ATATRRRR 63

Query: 66  VCSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPE 125
           +  EV +KSDS  S S++  S + +S       E    RIGA+VRVKVPLKVYHV K+PE
Sbjct: 64  ISCEVAIKSDSATSPSSSEFSESPSSSPGTADDETGGARIGARVRVKVPLKVYHVPKVPE 123

Query: 126 ANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV 182
            ++ GMEG LK YV VWKGK +SANLPYKV+F+  VEGR  VKF AHLKEDEFEYV
Sbjct: 124 IDILGMEGELKQYVGVWKGKRISANLPYKVQFLTEVEGRGKVKFFAHLKEDEFEYV 171

[Close]
BLAST of CmaCh18G008380 vs. NCBI nr
Match: gi|720065061|ref|XP_010276155.1| (PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nelumbo nucifera])

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1 

Query: 60  IGRGRRVCSEVTVKSDSR-------GSSSATVVSAAATSLSEEETGEAAATRIGAKVRVK 119
           +GR R +  E+ +K DS         SSSA+V SA++ +  EEE+  A   +IGA+VRVK
Sbjct: 52  LGRQRVISCEIALKPDSATVDASSPSSSSASVASASSAAAEEEESSLA---KIGARVRVK 111

Query: 120 VPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAH 179
           VPLKVYH+ K+PE +L GMEG LK YV +WKG  +SANLP+KVEFV  +EGR  VKF AH
Sbjct: 112 VPLKVYHIPKVPEFDLTGMEGELKQYVGLWKGNRISANLPFKVEFVTKIEGRGTVKFFAH 171

Query: 180 LKEDEFEYV 182
           LKEDEFEYV
Sbjct: 172 LKEDEFEYV 177

The following BLAST results are available for this feature:
BLAST of CmaCh18G008380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FTRV_MAIZE1.1e-2358.95Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1[more]
FTRV_SPIOL1.7e-1940.80Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oler... [more]
BLAST of CmaCh18G008380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV36_CUCSA6.7e-6880.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580660 PE=4 SV=1[more]
A5B8T4_VITVI3.6e-2954.55Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01160 PE=4 SV=... [more]
W9RQM9_9ROSA4.7e-2950.00Ferredoxin-thioredoxin reductase, variable chain OS=Morus notabilis GN=L484_0110... [more]
A8IXL0_BRACM4.4e-2759.83Lipoic acid synthase-like protein OS=Brassica campestris PE=2 SV=1[more]
R0FH45_9BRAS1.7e-2642.39Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002077mg PE=4 SV=1[more]
BLAST of CmaCh18G008380 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08410.16.0e-2845.93 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2[more]
AT5G23440.15.7e-2639.78 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1[more]
BLAST of CmaCh18G008380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458714|ref|XP_004147092.1|9.6e-6880.66PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus][more]
gi|659090253|ref|XP_008445916.1|3.6e-6779.56PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo][more]
gi|225463817|ref|XP_002271306.1|5.1e-2954.55PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Vitis vinifera][more]
gi|703132722|ref|XP_010105193.1|6.7e-2950.00Ferredoxin-thioredoxin reductase, variable chain [Morus notabilis][more]
gi|720065061|ref|XP_010276155.1|1.5e-2857.36PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nelumbo nucife... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003698Lipoyl_synth
IPR004207Fd_thioredoxin_Rdtase_alpha
IPR008990Elect_transpt_acc-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0016992lipoate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009107lipoate biosynthetic process
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0015979 photosynthesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G008380.1CmaCh18G008380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003698Lipoyl synthasePANTHERPTHR10949LIPOYL SYNTHASEcoord: 88..181
score: 2.9
IPR004207Ferredoxin thioredoxin reductase, alpha chainPRODOMPD015034coord: 105..181
score: 1.0
IPR004207Ferredoxin thioredoxin reductase, alpha chainPFAMPF02941FeThRed_Acoord: 105..177
score: 1.9
IPR008990Electron transport accessory protein-like domainunknownSSF50090Electron transport accessory proteinscoord: 104..180
score: 1.04
NoneNo IPR availableGENE3DG3DSA:2.30.30.50coord: 104..181
score: 4.8
NoneNo IPR availablePANTHERPTHR10949:SF11SUBFAMILY NOT NAMEDcoord: 88..181
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G008380Cucsa.281120Cucumber (Gy14) v1cgycmaB0778
CmaCh18G008380Cla022889Watermelon (97103) v1cmawmB400
CmaCh18G008380Csa5G580660Cucumber (Chinese Long) v2cmacuB418
CmaCh18G008380MELO3C011775Melon (DHL92) v3.5.1cmameB352
CmaCh18G008380ClCG11G012840Watermelon (Charleston Gray)cmawcgB339
CmaCh18G008380CSPI05G20480Wild cucumber (PI 183967)cmacpiB424
CmaCh18G008380CmoCh04G013490Cucurbita moschata (Rifu)cmacmoB425
CmaCh18G008380Lsi04G007630Bottle gourd (USVL1VR-Ls)cmalsiB380
CmaCh18G008380Cp4.1LG01g09950Cucurbita pepo (Zucchini)cmacpeB434
CmaCh18G008380CsaV3_5G029240Cucumber (Chinese Long) v3cmacucB0499
CmaCh18G008380Cla97C11G218730Watermelon (97103) v2cmawmbB409
CmaCh18G008380Bhi07G000943Wax gourdcmawgoB0545
CmaCh18G008380CsGy5G020000Cucumber (Gy14) v2cgybcmaB627
CmaCh18G008380Carg02037Silver-seed gourdcarcmaB1166
CmaCh18G008380Carg14427Silver-seed gourdcarcmaB1012
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh18G008380CmaCh04G012800Cucurbita maxima (Rimu)cmacmaB407
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G008380Melon (DHL92) v3.6.1cmamedB409
CmaCh18G008380Silver-seed gourdcarcmaB1167
CmaCh18G008380Wax gourdcmawgoB0540
CmaCh18G008380Cucurbita maxima (Rimu)cmacmaB402
CmaCh18G008380Cucurbita moschata (Rifu)cmacmoB406
CmaCh18G008380Cucurbita moschata (Rifu)cmacmoB420
CmaCh18G008380Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G008380Cucurbita pepo (Zucchini)cmacpeB429
CmaCh18G008380Bottle gourd (USVL1VR-Ls)cmalsiB384