Cp4.1LG01g08570 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCTCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGGTTCGGATTTTGTTCTGTTGTTTTCTTTTATTGTGTTGTTTGGCTTTTGGGAGAAGGGAAGAAAGGAAAATTTAGGACACTTGTAAGTTTGGTGAATTGATGAAGATCATACTCTTAAGTGTCTATTGGTGTTTGGTTTGGTTTTGATAAAAGTTGAAACTAAACTGTATAATTAACAAATAGTAGGTTAGATCATTACTAGAGTTATATGCGGCAACTACTTATGCGTTAAATGAAGTCTCACAAATAGTGTCTACCCTTAAAAGCTTCGAACACATCGAGTATATTGTAGTTAGTTGTCCATGTTAAGTAAAGTGACCTTTTGTATTTAGTTGATTTTGTGGGTTCAGTAGCTGACTGATGAAAAAGGAGTTAGCCAATTTTCAAAGAAGCTGCATTAAATTGTCAATTTTCAATTCCTTTTTTATCCAATCAACTACTTAACTTTGACACTTATGTAGCTAACTGTCAGGCATTCAATCCTTCTCTTATTTATAAGGGGAGGATTGTTTATGAGGTTTTATCAATAGGGATATAATTATAACTTTTAAAACCATAAGGATTAAATCTAACTTTCTCCAAACTATTGGGATCACATTTGTAATTCACCTACTATGTTTTAGTCCTCTGAAGCCTGACAGATTTGAAGGTAAAATCCTGGGATGGCAAGTTGCAATCAATCTAAATTGGGCTGTGGAAATGTGTTTCCATTTGAAAGTGAAAGATCAAGCATTAAAATTTCAATGAATTACTACATTAACCATAAAGATTGGATAGCAAGAGTTAACTACTGATTAAGGTATATTCTCTCGACCAAGGGATCATATATCTATAACTAAATTAAGCTTAACTCATGTGCTTAAGAAATGTACACTTGGTCAAAATGTCCAAAGTGCTCCATATCCCTCCCGTAGAGGTTTCCTGGGTTTGTTGCAGTTGGAAGAGAGGTGCCTCTGATACCAACTTGAGTTATAAAATGAAGGGAATGTACTTCATGTTGCTCAGTGGGCAGAATAAATTATATGAGATTGGAGCTCTTCTTTAGTTTATATGTTGCCATGGTCAATCAGTCGACACCCAATAGGTGAGTGACAAACCAATTCTGTGCACCCTTGTGAATATGATTTCTGCTGTGCCTGGGTCTTAATGCCGTTATAGAGAGTCGTCAGTAGGGAGCTGGTCTGATACTGGCTCAGTTTGTTTGGAATTTTGGAGAAAGTGGTTTACTCGTCTCTCTCTCCTGGTTCTTCCCAGTAACCCCATTCTTTTGCGTGTGTATGAGTGAGCGTGTTTTGGTGTATGCATCTTGATTTGCAGGGGAGCCAACATTTACCTTTTATGTATGGCATGAGATTCTGAGTCATTTACAGCATTTGTTGTTGGTTGTCTTTCCTGCTCACCATTTTTTATTGTTATTATGAATCGTTAATTTGGAATAACAGATGTTTAAGTATAGAAAAACGTTTACCAAATAGTGCATTTAAGCTATACCTTTATATTCTAATATATACACATGCATGAACATATTTATTTTATCTATGAAGATCATGGGGTGGGGACGTCGAAATTTTTAGTTTGAGTATTAAGAATGTGATACTTTCAATTGACTTCGAGTTCAGGCTCTGTATCATAGGTTGTACTGATTCTTGATCACTTGCTTTTGCGATAATTCCTGCAATGTGACAGCACTCAGTTCATGTTAGAACATTCACATAGTAATTTGTTATCCATAAAATAACATTTTAATCTATGTTTTCTTTTGACTCTTCTCTTCCGTCTGACTGATTCACAGATCAGCAATATACCTGCAACTACTTTTTATTTCTCTAACTTTCTTTCCCCCAAAAGAAAACCCTTGTCGAGGTTTAACAAATCACATGTTTCTCGAATGTTGCAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCACAGGTTATTGAATCTGGTTTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCCGAGGAGTATGCAGGAAAGTTTAAATTTTACAAGGTAAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGCCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGATATCATGGACAAATTCTTGTAGAGATGGCTGATAAAAAGTACGTATTGAAAGAATCAAAGCTGCTTTCTCATAGTTTATTGAATTTCTCCTCTATATCTGATGATGAATTCTCTAGTCTGGAAATAAACTCTCCTCGTTTGTTACAAATAGTTCTTAATGCAACTGTATCTTCTTTGGTCATGGCAATTCAATACCTTTTCTATGAATGCATCTTTCTTTTTTGAATT ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCTCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCACAGGTTATTGAATCTGGTTTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCCGAGGAGTATGCAGGAAAGTTTAAATTTTACAAGGTAAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGCCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGATATCATGGACAAATTCTTGTAGAGATGGCTGATAAAAAGTACGTATTGAAAGAATCAAAGCTGCTTTCTCATAGTTTATTGAATTTCTCCTCTATATCTGATGATGAATTCTCTAGTCTGGAAATAAACTCTCCTCGTTTGTTACAAATAGTTCTTAATGCAACTGTATCTTCTTTGGTCATGGCAATTCAATACCTTTTCTATGAATGCATCTTTCTTTTTTGAATT ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCTCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCACAGGTTATTGAATCTGGTTTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCCGAGGAGTATGCAGGAAAGTTTAAATTTTACAAGGTAAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGCCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGATATCATGGACAAATTCTTGTAG MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSEEYAGKFKFYKVNTDEEAGIASQCAIRSIPTAIIFKNGEKKEAIIGAVPKTTLTDIMDKFL
BLAST of Cp4.1LG01g08570 vs. Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2) HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43 Identity = 92/191 (48.17%), Postives = 127/191 (66.49%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38 Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. Swiss-Prot
Match: TRXM1_ORYSJ (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0639900 PE=2 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38 Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. Swiss-Prot
Match: TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE=2 SV=2) HSP 1 Score: 159.5 bits (402), Expect = 3.5e-38 Identity = 93/186 (50.00%), Postives = 119/186 (63.98%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2) HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37 Identity = 78/165 (47.27%), Postives = 109/165 (66.06%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TrEMBL
Match: A0A0A0L5C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104920 PE=4 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 1.9e-67 Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TrEMBL
Match: E0CSM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02890 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 3.3e-51 Identity = 109/188 (57.98%), Postives = 134/188 (71.28%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TrEMBL
Match: A0A0K9QL86_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166590 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 8.9e-49 Identity = 102/187 (54.55%), Postives = 132/187 (70.59%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TrEMBL
Match: M5WVD9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011915mg PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48 Identity = 112/195 (57.44%), Postives = 133/195 (68.21%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TrEMBL
Match: A0A0J8BDD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096860 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47 Identity = 91/165 (55.15%), Postives = 125/165 (75.76%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4) HSP 1 Score: 175.3 bits (443), Expect = 3.4e-44 Identity = 92/191 (48.17%), Postives = 127/191 (66.49%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein) HSP 1 Score: 157.9 bits (398), Expect = 5.7e-39 Identity = 78/165 (47.27%), Postives = 109/165 (66.06%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1) HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38 Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein) HSP 1 Score: 109.8 bits (273), Expect = 1.8e-24 Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. TAIR10
Match: AT1G50320.1 (AT1G50320.1 thioredoxin X) HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16 Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. NCBI nr
Match: gi|449431838|ref|XP_004133707.1| (PREDICTED: thioredoxin-like [Cucumis sativus]) HSP 1 Score: 263.5 bits (672), Expect = 2.7e-67 Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. NCBI nr
Match: gi|359493854|ref|XP_002282265.2| (PREDICTED: thioredoxin M4, chloroplastic [Vitis vinifera]) HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51 Identity = 109/188 (57.98%), Postives = 134/188 (71.28%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. NCBI nr
Match: gi|697148344|ref|XP_009628353.1| (PREDICTED: thioredoxin-like [Nicotiana tomentosiformis]) HSP 1 Score: 206.8 bits (525), Expect = 3.0e-50 Identity = 106/186 (56.99%), Postives = 138/186 (74.19%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. NCBI nr
Match: gi|1009170265|ref|XP_015866106.1| (PREDICTED: thioredoxin-1 [Ziziphus jujuba]) HSP 1 Score: 205.3 bits (521), Expect = 8.8e-50 Identity = 105/188 (55.85%), Postives = 135/188 (71.81%), Query Frame = 1
BLAST of Cp4.1LG01g08570 vs. NCBI nr
Match: gi|657987986|ref|XP_008386162.1| (PREDICTED: thioredoxin M4, chloroplastic [Malus domestica]) HSP 1 Score: 202.2 bits (513), Expect = 7.5e-49 Identity = 105/190 (55.26%), Postives = 133/190 (70.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|