Carg00024 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00024
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	thioredoxin-like
Location	Cucurbita_argyrosperma_scaffold_001 : 95242 .. 97672 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGGTTCGGATTTTGTTCTGTTGTTTTCTTTTATTGTGATGTTTGGCTTTTGGGAGAAGGGAAGAAAGGAAAATTTAGGACACTTGTAAGTTTGGTGAATTGATGAAGATCATACTCTTAAGTATCTATTGGTGTTTGGTTTGGTTTTGATAAAAGTTGAAACTAAAATGTATAATTAACAAATGGTAGGTTAGATCATTACTAGAGTTATATGCGCCAACTACTTATGCGTTAAATGAAGTCTCACAAATCGTGTCTACCATTAAAAGCTTCGAACACATCGAGTATATTGTAGTTAGTTATCCATGTTAAGTGAAGTGACCTTTTGTATTTAGTTGATTTTGTGGGTTCAGTAGCTGACTGATGAAAAAGGAGTTGGCCAATTTTCAAAGACGCTGCATTAAATTGTCAATTTTCAATTCCTTTTTTATCCAATCAACTACTTAACTTTGACACTTATGTAGCTAACTGTCAGGCATTCAATCCTTCTCTTATTTATAAGGGGAGGATTGTTTATGAGGTTTTATCAATAGGGATATAATTATAACTTTTAAAACCATAAGGATTAAATCTAACTTTCTCCAAACTATTGGGATCACATTTGTAATTCACCTACTATGTTTTAGTCCTCTGAAGCCTGACAGATTTGAAGGTAAAATCCTGGGATGGCAAGTTGCAATCAATCTAAATTGGGCTGTGGAAATGTGTTTCCATTTGAAAGTAAAAGATCAAGCATTAAAATTTCAAATGAATTACTACATTAACCATAAAGATTGGATAGCAAGAGTTAACTACTGATTAAGGTATATTCTCTCGACCAAGAGATCATATATCTATAACTAAATTAAGCTTAATTCATGTGCTTAAGATATGTACACTTGGTCAAAATGTCCAAAGTGCTCCATATCCCTCCCGTAGAGGTTTTCTGGGTTTGTTGCAGTTGGAAGAGAGGTGCCTCTGATACCAACTTAAGTTATAAAATGAAGGGAATGTACTTCATGTTGCTCAGTGGGCAGAATAAATTATATGAGATTGGAGCTCTTCTTTAGTTTATATGTTGCCATGGTCAATCAGTGGACACCCAATAGGTGAGTGACAAACCAATTCTGTGCACCCTTGTGAATATGATTTTTGCTGTGCCTGGGTCTTAATGCCGTTATAGAGAGTCGTCAGTAGGGAGCTGGTCTGATACTGGCTCAGTTTGTTTGGAATTTTGGAGAAAGTGGTTTACTCGTCTCTCTCTCCTGGTTCTTCCCAGTAACCCCATTCCTTTGCGTGTGTATGAGTGAGCGTGTTTTGGTGTATGCATCTTGATTTGCAGGGGAGCCAACATTTACCTTTTATGTATGGCATGAGATTCTGAGTCATTTACAGCATTTGTTGTTGGTTGTCTTTCCTGCACCCCATTTTTTATTGTTATTATGAATCGTTAATTTGGAATAACAGATGTTTAAGTATAGAAAAACGTTTACCAAATAGTGCATTTAAGCTGTACCTTTATATTCTAATATATACACATGCATGAACATATTTATTTTATCTATGAAGATCATGGGGTGGGGACGTCGAAATTTTTAGTTCGAGTATTAAGAATTGTGATACTTTCAATTGACTTTGAGTTCAGGCTCTGTATCATTGGTTGTACTGATTCTTGATCACTTGCTTTTGCGATGATTCCTGCAGTGTGACAGCACTCAGTTCATGTTAGAACATTCACATAGGAATTTGTTATCCATAAACTAACATTTTAATCTATGTTTCCTTTTGACTCTTCTCTTCCGGCTGACTGATTCTCAGATCAGCAATATACCTGCAACTACTTTTTATTTCTCTAACTTTCTTCCCCCCAAAAGAAAACCCTTGTCGAGGTTTAACAAATCACGTTTCTCGAATGTTGCAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTCTTCCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG

mRNA sequence

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTCTTCCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG

Coding sequence (CDS)

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTCTTCCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG

Protein sequence

MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL

Homology

[Close]

BLAST of Carg00024 vs. NCBI nr
Match: XP_022941602.1 (uncharacterized protein LOC111446910 isoform X1 [Cucurbita moschata])

HSP 1 Score: 349.0 bits (894), Expect = 9.6e-93
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS
Sbjct: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
           GRVVCEGQETSSIVPSASEATWQSQVIESG+PVLVEFWAPWCGPCRMIHPVVDELSDEYA
Sbjct: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL
Sbjct: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 177

[Close]

BLAST of Carg00024 vs. NCBI nr
Match: XP_023539212.1 (uncharacterized protein LOC111799921 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.7 bits (883), Expect = 1.8e-91
Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS
Sbjct: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
           GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELS+EYA
Sbjct: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSEEYA 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           GKFKFYKVNTDEEAGIASQCAIRSIPT IIFKNGEKKEAIIGAVPKTTLTD MDKFL
Sbjct: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTAIIFKNGEKKEAIIGAVPKTTLTDIMDKFL 177

[Close]

BLAST of Carg00024 vs. NCBI nr
Match: XP_022941603.1 (uncharacterized protein LOC111446910 isoform X2 [Cucurbita moschata])

HSP 1 Score: 330.1 bits (845), Expect = 4.6e-87
Identity = 169/177 (95.48%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS
Sbjct: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
           GRVVCE       VPSASEATWQSQVIESG+PVLVEFWAPWCGPCRMIHPVVDELSDEYA
Sbjct: 61  GRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL
Sbjct: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 170

[Close]

BLAST of Carg00024 vs. NCBI nr
Match: XP_023539221.1 (uncharacterized protein LOC111799921 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 8.7e-86
Identity = 167/177 (94.35%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS
Sbjct: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
           GRVVCE       VPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELS+EYA
Sbjct: 61  GRVVCE-------VPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSEEYA 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           GKFKFYKVNTDEEAGIASQCAIRSIPT IIFKNGEKKEAIIGAVPKTTLTD MDKFL
Sbjct: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTAIIFKNGEKKEAIIGAVPKTTLTDIMDKFL 170

[Close]

BLAST of Carg00024 vs. NCBI nr
Match: XP_022977621.1 (uncharacterized protein LOC111477886 isoform X1 [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 2.8e-84
Identity = 162/177 (91.53%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVL SLALPSSSVLASTTFSGRRTSL LPRYRALK+GHSFTSHS+KSARSNARFTHRS
Sbjct: 1   MATVLGSLALPSSSVLASTTFSGRRTSLVLPRYRALKIGHSFTSHSVKSARSNARFTHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
            RVVC+GQETSSIVPSASEATWQSQVIES +PVLVEFWAPWCGPCRMIHPVVDELS EYA
Sbjct: 61  DRVVCDGQETSSIVPSASEATWQSQVIESRVPVLVEFWAPWCGPCRMIHPVVDELSKEYA 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           GKFKFYKVNTD+EA IAS+ AIRS+PTVIIFKNGEKKEAIIGAV KTTLTDSMDKFL
Sbjct: 121 GKFKFYKVNTDQEAEIASRYAIRSVPTVIIFKNGEKKEAIIGAVTKTTLTDSMDKFL 177

[Close]

BLAST of Carg00024 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 93/191 (48.69%), Postives = 128/191 (67.02%), Query Frame = 0


Query: 1   MATVLDS----------LALPSSSVLASTTFSGRRTSLA-LPRYRALKVGHSFTSHSIKS 60
           MA++LDS          +A   SS  A+ + S RR S A    +R LK   S  + S   
Sbjct: 1   MASLLDSVTVTRVFSLPIAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASL 60

Query: 61  ARSNARFTHRSGRVVCEGQETSSI---VPSASEATWQSQVIESGLPVLVEFWAPWCGPCR 120
             +      R GR+ CE Q+T++    VP+ S++ WQ++V+ES +PVLVEFWAPWCGPCR
Sbjct: 61  GANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCR 120

Query: 121 MIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPK 178
           MIHP+VD+L+ ++AGKFKFYK+NTDE    A++  IRS+PTVIIFK GEKK++IIGAVP+
Sbjct: 121 MIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPR 180

[Close]

BLAST of Carg00024 vs. TAIR10
Match: AT4G03520.1 (Thioredoxin superfamily protein)

HSP 1 Score: 161.4 bits (407), Expect = 5.2e-40
Identity = 79/165 (47.88%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 13  SSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSS 72
           SS  ++++ S RR    LP    L++  S +  S+ S     R +     VVCE QET++
Sbjct: 22  SSSPSASSLSSRRMFAVLPESSGLRIRLSLSPASLTSIH-QPRVSRLRRAVVCEAQETTT 81

Query: 73  IVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDE 132
            +   +++TW S V+++  PV+V+FWAPWCGPC+MI P+V++L+  Y GK KFYK+NTDE
Sbjct: 82  DIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDE 141

Query: 133 EAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
                 Q  +RSIPT++IF  GEKK+ IIGAVPKTTLT S+DKFL
Sbjct: 142 SPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

[Close]

BLAST of Carg00024 vs. TAIR10
Match: AT1G03680.1 (thioredoxin M-type 1)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-39
Identity = 76/158 (48.10%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 20  TFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSSIVPSASE 79
           +FS R+    LP    L+     T  S+ S   N+R +     V+CE Q+T++ +P  ++
Sbjct: 27  SFSTRQMFSVLPESSGLR-----TRVSLSSLSKNSRVSRLRRGVICEAQDTATGIPVVND 86

Query: 80  ATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQ 139
           +TW S V+++  PV V+FWAPWCGPC+MI P+V+EL+ +YAG+FKFYK+NTDE      Q
Sbjct: 87  STWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQ 146

Query: 140 CAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
             +RSIPT++IF NGEKK+ IIGAV K TL  S++KFL
Sbjct: 147 YGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179

[Close]

BLAST of Carg00024 vs. TAIR10
Match: AT2G15570.2 (Thioredoxin superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-25
Identity = 43/107 (40.19%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 71  SSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNT 130
           S      ++ +W+  V++S  PVLVEF+  WCGPCRM+H ++DE++ +YAGK   Y +N 
Sbjct: 66  SRAAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNA 125

Query: 131 DEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
           D +  +A +  I+++P V++FKNGEK+E+I+G +PK     ++++ L
Sbjct: 126 DNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 172

[Close]

BLAST of Carg00024 vs. TAIR10
Match: AT1G50320.1 (thioredoxin X)

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 26  TSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVV--CEGQETSSIVPSASEATWQ 85
           TS+++    +++V     +  + S  S AR T +S   V  C G      +    E+ + 
Sbjct: 27  TSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSVIRCGG------IKEIGESEFS 86

Query: 86  SQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIR 145
           S V+ES  PVLVEF A WCGPC++I+P ++ LS EY  K    K++ D    + ++  + 
Sbjct: 87  STVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVY 146

Query: 146 SIPTVIIFKNGEKKEAI--IGAVPKTTLTDSMDKFL 178
            +P  I+FK+G++       GA+ K  L + +D  L
Sbjct: 147 GLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLL 176

[Close]

BLAST of Carg00024 vs. Swiss-Prot
Match: sp|Q9SEU6|TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g15360 PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 93/191 (48.69%), Postives = 128/191 (67.02%), Query Frame = 0


Query: 1   MATVLDS----------LALPSSSVLASTTFSGRRTSLA-LPRYRALKVGHSFTSHSIKS 60
           MA++LDS          +A   SS  A+ + S RR S A    +R LK   S  + S   
Sbjct: 1   MASLLDSVTVTRVFSLPIAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASL 60

Query: 61  ARSNARFTHRSGRVVCEGQETSSI---VPSASEATWQSQVIESGLPVLVEFWAPWCGPCR 120
             +      R GR+ CE Q+T++    VP+ S++ WQ++V+ES +PVLVEFWAPWCGPCR
Sbjct: 61  GANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCR 120

Query: 121 MIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPK 178
           MIHP+VD+L+ ++AGKFKFYK+NTDE    A++  IRS+PTVIIFK GEKK++IIGAVP+
Sbjct: 121 MIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPR 180

[Close]

BLAST of Carg00024 vs. Swiss-Prot
Match: sp|P07591|TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-39
Identity = 79/148 (53.38%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 30  LPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIES 89
           +P +R LK      S S+ S+ S  +F + S  VVC+  E    V   ++++W+  V+ES
Sbjct: 35  VPTFRGLKRSFPALSSSVSSS-SPRQFRYSS--VVCKASEAVKEVQDVNDSSWKEFVLES 94

Query: 90  GLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVI 149
            +PV+V+FWAPWCGPC++I PV+DEL+ EY+GK   YK+NTDE  GIA+Q  IRSIPTV+
Sbjct: 95  EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 154

Query: 150 IFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
            FKNGE+KE+IIGAVPK+TLTDS++K+L
Sbjct: 155 FFKNGERKESIIGAVPKSTLTDSIEKYL 179

[Close]

BLAST of Carg00024 vs. Swiss-Prot
Match: sp|Q6H7E4|TRXM1_ORYSJ (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639900 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-39
Identity = 79/126 (62.70%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 59  RSGR-----VVC--EGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPV 118
           RSGR     VVC  +GQETS  VP  +++TWQS V+ES LPVLVEFWA WCGPC+MI PV
Sbjct: 46  RSGRARGVSVVCAAQGQETSFQVPDVTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPV 105

Query: 119 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 178
           + +LS EY GK   YK+NTDE   IA+Q  IRSIPT++IFKNGEKK+A+IGAVP++TL  
Sbjct: 106 IGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVS 165

[Close]

BLAST of Carg00024 vs. Swiss-Prot
Match: sp|Q9SEU8|TRXM2_ARATH (Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 9.3e-39
Identity = 79/165 (47.88%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 13  SSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEGQETSS 72
           SS  ++++ S RR    LP    L++  S +  S+ S     R +     VVCE QET++
Sbjct: 22  SSSPSASSLSSRRMFAVLPESSGLRIRLSLSPASLTSIH-QPRVSRLRRAVVCEAQETTT 81

Query: 73  IVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDE 132
            +   +++TW S V+++  PV+V+FWAPWCGPC+MI P+V++L+  Y GK KFYK+NTDE
Sbjct: 82  DIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDE 141

Query: 133 EAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 178
                 Q  +RSIPT++IF  GEKK+ IIGAVPKTTLT S+DKFL
Sbjct: 142 SPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

[Close]

BLAST of Carg00024 vs. Swiss-Prot
Match: sp|Q7X8R5|TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0530600 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 94/186 (50.54%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLAS---TTFSGRRTSLALP----RYRALKVGHSFTSHSIKSARSN 60
           MA+ L +     SS LAS      S RR     P    RY+AL+    F          N
Sbjct: 1   MASALAASTAVCSSPLASXXXXXXSARRLRAVPPSRGIRYQALRADSGFA--------GN 60

Query: 61  ARFTHRSGRVVC--EGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPV 120
            R   R   VVC  +GQ+TS  VP  +++TWQS V+ES LPVLV +WA WCGPC+MI PV
Sbjct: 61  RRGGGRGASVVCAVQGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPV 120

Query: 121 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 178
           V +LS EY GK K YK+NTDE   IASQ  +RSIPT++IFKNGEKK+A+IGAVP++TL  
Sbjct: 121 VGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLIA 178

[Close]

BLAST of Carg00024 vs. TrEMBL
Match: tr|A0A0A0L5C6|A0A0A0L5C6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104920 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.1e-68
Identity = 131/176 (74.43%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSL LP SS LAST FS RRTSL LP+ R LK+ +SFTSHS++SARSNARF HRS
Sbjct: 1   MATVLDSLTLPCSSALASTAFSARRTSLCLPQCRGLKIANSFTSHSLRSARSNARFPHRS 60

Query: 61  GRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
             +VCE QET++IVP+ASEATW+S V ES LPV+VEFWAPWCGPCRM+HP++D+LS EY 
Sbjct: 61  ATIVCEAQETAAIVPAASEATWESLVTESKLPVMVEFWAPWCGPCRMMHPIIDDLSKEYE 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKF 177
           GKFKFYKV+TD    IAS+  IRSIPTVIIFK+GEKKEAIIGAVPK TLT SM+KF
Sbjct: 121 GKFKFYKVDTDANPSIASRYGIRSIPTVIIFKDGEKKEAIIGAVPKGTLTASMEKF 176

[Close]

BLAST of Carg00024 vs. TrEMBL
Match: tr|E0CSM0|E0CSM0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02890 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.1e-52
Identity = 111/188 (59.04%), Postives = 135/188 (71.81%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLASTTF-----------SGRRTSLALPRYRALKVGHSFTSHSIKS 60
           MATVLDSLA+P SS L S+ F           SGRR    LP +  LK+  S  S S+ +
Sbjct: 1   MATVLDSLAVPRSSALPSSAFAPIASSPVCFLSGRRGLARLPEFSGLKIQPSLASRSVAA 60

Query: 61  ARSNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIH 120
           A  ++R   R G VVCE QET+  VP+  +ATWQS V+++  PVLVEFWAPWCGPCRMIH
Sbjct: 61  AGRSSRVGRRVGGVVCEAQETAVEVPAVIDATWQSLVLDADTPVLVEFWAPWCGPCRMIH 120

Query: 121 PVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTL 178
           PV++EL+ +Y GK K YKVNTDE   IA++  IRSIPTVIIFK+GEKKEAIIGAVPK+TL
Sbjct: 121 PVINELAKQYTGKLKCYKVNTDESPSIATRYGIRSIPTVIIFKSGEKKEAIIGAVPKSTL 180

[Close]

BLAST of Carg00024 vs. TrEMBL
Match: tr|A0A1S4DRW2|A0A1S4DRW2_TOBAC (thioredoxin-like OS=Nicotiana tabacum OX=4097 GN=LOC107832514 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.5e-51
Identity = 108/186 (58.06%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLA---------STTFSGRRTSLALPRYRALKVGHSFTSHSIKSAR 60
           MA VL+++A+P +S L+         S +FSGRR+S+   ++R LKV  S +  S+ S  
Sbjct: 1   MAGVLETIAVPRASALSSARLAPIADSNSFSGRRSSVNFSQFRGLKVQQSRSPVSLSSTS 60

Query: 61  SNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPV 120
           ++ R   R GR+VCE QET+  VP+ ++ TW+S VIES LPVLVEFWAPWCGPCRMIHPV
Sbjct: 61  NSVR---RGGRIVCEAQETAVQVPAVTDKTWKSLVIESDLPVLVEFWAPWCGPCRMIHPV 120

Query: 121 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 178
           + ELS EYAGKFKF+++NTDE    AS+  IRSIPTV+IFK+GEKK+A+IGAVPKTTLT 
Sbjct: 121 IGELSQEYAGKFKFFQLNTDESPSTASEYGIRSIPTVMIFKDGEKKDAVIGAVPKTTLTT 180

[Close]

BLAST of Carg00024 vs. TrEMBL
Match: tr|A0A2N9ENA3|A0A2N9ENA3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4155 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.7e-50
Identity = 106/189 (56.08%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVL------------ASTTFSGRRTSLALPRYRALKVGHSFTSHSIK 60
           MATVL+SL +P SS L            + ++ S RR    LP +  LKV  SFT+ S+ 
Sbjct: 1   MATVLESLTVPRSSALLPSFTRSHIAASSVSSLSARR----LPLFTGLKVKQSFTARSLG 60

Query: 61  SARSNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMI 120
           S  S++R   R G VVCE Q+T+  VP+ ++  WQS V+ES  PVLVEFWAPWCGPCRMI
Sbjct: 61  SVTSSSRLARRGGLVVCEAQDTAIEVPAITDENWQSLVLESESPVLVEFWAPWCGPCRMI 120

Query: 121 HPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTT 178
           HP++DEL+ +Y GK K YKVNTDE + IA++  IRSIPTVIIFKNGEKK+ +IGAVPK+T
Sbjct: 121 HPIIDELAKQYVGKLKCYKVNTDESSSIATRYGIRSIPTVIIFKNGEKKDTVIGAVPKST 180

[Close]

BLAST of Carg00024 vs. TrEMBL
Match: tr|A0A1J6I1W2|A0A1J6I1W2_NICAT (Thioredoxin m-type, chloroplastic OS=Nicotiana attenuata OX=49451 GN=TRXM_3 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 107/186 (57.53%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 1   MATVLDSLALPSSSVLA---------STTFSGRRTSLALPRYRALKVGHSFTSHSIKSAR 60
           MA VL+++A+P +SV +         S++ SGRR+S+   ++R LK     +  S+ S  
Sbjct: 1   MAGVLETIAVPRASVFSSARLAPIADSSSSSGRRSSVNFSQFRGLKFQPVRSPVSLSSQS 60

Query: 61  SNARFTHRSGRVVCEGQETSSIVPSASEATWQSQVIESGLPVLVEFWAPWCGPCRMIHPV 120
            + R   RSGRVVCE QET+  VP+ ++ TW+S VIES LPVLVEFWAPWCGPCRMIHPV
Sbjct: 61  KSVR---RSGRVVCEAQETAVQVPAVTDKTWKSLVIESDLPVLVEFWAPWCGPCRMIHPV 120

Query: 121 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 178
           + ELS EYAGKFKF+++NTDE    AS+  IRSIPTV+IFK+GEKK+A+IGAVPKTTLT 
Sbjct: 121 IGELSQEYAGKFKFFQLNTDESPSTASEYGIRSIPTVMIFKDGEKKDAVIGAVPKTTLTT 180

The following BLAST results are available for this feature:

BLAST of Carg00024 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941602.1	9.6e-93	99.44	uncharacterized protein LOC111446910 isoform X1 [Cucurbita moschata]	[more]
XP_023539212.1	1.8e-91	98.31	uncharacterized protein LOC111799921 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941603.1	4.6e-87	95.48	uncharacterized protein LOC111446910 isoform X2 [Cucurbita moschata]	[more]
XP_023539221.1	8.7e-86	94.35	uncharacterized protein LOC111799921 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022977621.1	2.8e-84	91.53	uncharacterized protein LOC111477886 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg00024 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15360.1	1.2e-44	48.69	thioredoxin M-type 4	[more]
AT4G03520.1	5.2e-40	47.88	Thioredoxin superfamily protein	[more]
AT1G03680.1	2.0e-39	48.10	thioredoxin M-type 1	[more]
AT2G15570.2	2.7e-25	40.19	Thioredoxin superfamily protein	[more]
AT1G50320.1	5.2e-16	31.41	thioredoxin X	[more]

BLAST of Carg00024 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SEU6\|TRXM4_ARATH	2.1e-43	48.69	Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g15360 PE=2 ...	[more]
sp\|P07591\|TRXM_SPIOL	1.9e-39	53.38	Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2	[more]
sp\|Q6H7E4\|TRXM1_ORYSJ	4.2e-39	62.70	Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0...	[more]
sp\|Q9SEU8\|TRXM2_ARATH	9.3e-39	47.88	Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g03520 PE=1 ...	[more]
sp\|Q7X8R5\|TRXM2_ORYSJ	1.2e-38	50.54	Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]

BLAST of Carg00024 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5C6\|A0A0A0L5C6_CUCSA	4.1e-68	74.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104920 PE=4 SV=1	[more]
tr\|E0CSM0\|E0CSM0_VITVI	7.1e-52	59.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02890 PE=4 SV=...	[more]
tr\|A0A1S4DRW2\|A0A1S4DRW2_TOBAC	3.5e-51	58.06	thioredoxin-like OS=Nicotiana tabacum OX=4097 GN=LOC107832514 PE=4 SV=1	[more]
tr\|A0A2N9ENA3\|A0A2N9ENA3_FAGSY	8.7e-50	56.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4155 PE=4 SV=1	[more]
tr\|A0A1J6I1W2\|A0A1J6I1W2_NICAT	1.5e-49	57.53	Thioredoxin m-type, chloroplastic OS=Nicotiana attenuata OX=49451 GN=TRXM_3 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR017937	Thioredoxin_CS
IPR005746	Thioredoxin
IPR013766	Thioredoxin_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00024-RA	Carg00024-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 93..101 score: 64.57 coord: 141..152 score: 39.12 coord: 101..110 score: 61.5
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 74..177 e-value: 4.2E-34 score: 118.7
None	No IPR available	PANTHER	PTHR10438:SF367	SUBFAMILY NOT NAMED	coord: 16..176
None	No IPR available	CDD	cd02947	TRX_family	coord: 85..174 e-value: 9.21622E-38 score: 126.134
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 76..175 e-value: 2.0E-30 score: 104.7
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 68..177 score: 13.819
IPR005746	Thioredoxin	TIGRFAM	TIGR01068	TIGR01068	coord: 79..176 e-value: 2.3E-35 score: 118.8
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 16..176
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 94..112
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 74..177

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00024	Cla011786	Watermelon (97103) v1	carwmB0664
Carg00024	Csa3G104920	Cucumber (Chinese Long) v2	carcuB0684
Carg00024	MELO3C016516	Melon (DHL92) v3.5.1	carmeB0670
Carg00024	ClCG10G006910	Watermelon (Charleston Gray)	carwcgB0641
Carg00024	CSPI03G06150	Wild cucumber (PI 183967)	carcpiB0696
Carg00024	Cucsa.074740	Cucumber (Gy14) v1	carcgyB0740
Carg00024	CmaCh04G009060	Cucurbita maxima (Rimu)	carcmaB0948
Carg00024	CmaCh16G007820	Cucurbita maxima (Rimu)	carcmaB0946
Carg00024	CmoCh04G009730	Cucurbita moschata (Rifu)	carcmoB0923
Carg00024	CmoCh16G008450	Cucurbita moschata (Rifu)	carcmoB0920
Carg00024	Lsi05G007150	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00024	Cp4.1LG14g00290	Cucurbita pepo (Zucchini)	carcpeB0937
Carg00024	Cp4.1LG01g08570	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00024	CsGy3G006250	Cucumber (Gy14) v2	carcgybB0659
Carg00024	MELO3C016516.2	Melon (DHL92) v3.6.1	carmedB0683
Carg00024	CsaV3_3G006270	Cucumber (Chinese Long) v3	carcucB0698
Carg00024	Cla97C10G190770	Watermelon (97103) v2	carwmbB0686
Carg00024	Cla97C05G096020	Watermelon (97103) v2	carwmbB0698
Carg00024	Bhi11G000611	Wax gourd	carwgoB0775

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00024	Carg21080	Silver-seed gourd	carcarB468

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00024	Wax gourd	carwgoB0778
Carg00024	Wax gourd	carwgoB0779