CmoCh04G009730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Thioredoxin
Location	Cmo_Chr04 : 4945334 .. 4947961 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGGTCAGGAAACTTCTTCCATAGGTTCGGATTTTGTTCTGTTGTTTTCTTTTATTGTGATGTTTGGCTTTTGGGAGAAGGGAAGAAAGGAAAATTTAGGACACTTGTAAGTTTGGTGAATTGATGAAGATCATACTCTGAAGTATCTATTGGTGTTTGGTTTGGTTTTGATAAAAGTTGAAACTAAAATGTATAATTAACAAATGGTAGGTTAGATCATTACTAGAGTTATATGCGCCAACTACTTATGCGTTAAATGAAGTCTCACAAATAGTGTCTACCATTAAAAGCTTCGAACACATCGAGTATATTGTAGTTAGTTATCCATGTTAAGTGAAGTGACCTTTTGTATTTAGTTGATTTTGTGGGTTCAGTAGCTGACTGATGAAAAAGGAGTTGGCCAATTTTCAAAGACGCTGCATTAAATTGTCAATTTTCAATTCCTTTTTTATCCAATCAACTACTTAACTTTGACACTTATGTAGCTAACTGTCAGGCATTCAATCCTTCTCTTATTTATAAGGGGAGGATTGTTTATGAGGTTTTATCAATAGGGATATAATTATAACTTTTAAAACCATAAGGATTAAATCTAACTTTCTCCAAACTATTGGGATCACATTTGTAATTCGCCTACTATGTTTTAGTCCTCTGAAGCCTGACAGATTTGAAGGTAAAATCCTGGGATGGCAAGTTGCAATCAATCTAAATTGGGCTGTGGAAATGTGTTTCCATTTGAAAGTAAAAGATCAAGCATTAAAATTTCAAATGAATTACTACATTAACCATAAAGATTGGATAGCAAGAGTTAACTACTGATGAAGGTATATTCTCTCGACCAAGAGATCATATATCTATAACTAAATTAAGCTTAATTCATGTGCTTAAGATATGTACACTTGGTCAAAATGTCCAAAGTGCTCCATATCCCTCCCGTAGAGGTTTTCTGGGTTTGTTGCAGTTGGAAGAGAGGTGCCTCTGATGCCAACTTAAGTTATAAAATGAAGGGAATGTACTTCATGTTGCTCAGTGGGCAGAATAAATTATATGAGATTGGAGCTCTTCTTTAGTTTATATGTTGCCATGGTCAATCAGTGGACACCCAATAGGTGAGTGACAAACCAATTCTGTGCACCCTTGTGAATATGATTTTTGCTGTGCCTGGGTCTTAATGCCGTTATAGAGAGTCGTCAGTAGGGAGCTGGTCTGATACTGGCTCAGTTTGTTTGGAATTTTGGAGAAAGTGGTTTACTCGTCTCTCTCTCCTGGTTCTTCCCAGTAACCCCATTCCTTTGCGTGTGTATGAGTGAGCGTGTTTTGGTGTATGCATCTTGATTTGCAGGGGAGCCAACATTTACCTTTTATGTATGGCACGAGATTCTGAGTCATTTACAGCATTTGTTGTTGGTTGTCTTTCCTGCACACCATTTTTTATTGTTATTATGAATCGTTAATTTGGAATAACAGATGTTTAAGTATAGAAAAACGTTTACCAAATAGTGCATTTAAGCTGTACCTTTATATTCTAATATATACACATGCATGAACATATTTATTTTATCTACGAAGATCATGGGGTGGGGACGTCGAAATTTTTAGTTTGAGTATTAAGAATTGTGATACTTTCAATTGACTTTGAGTTCAGGCTCTGTATCATTGGTTGTACTGATTCTTGATCACTTGCTTTTGCGATGATTCCTGCAGTGTGACAGCACTCAGTTCATGTTAGAACATTCACATAGGAATTTGTTATCCATAAACTAACATTTTAATCTATGTTTTCTTTTGACTCTTCTCTTCCGGCTGACTGATTCTCAGATCAGCAATATACCTGCAACTACTTTTTATTTCTCTAACTTTCTTCCCCCCAAAAGAAAACCCTTGTCGAGGTTTAACAAATCACGTTTCTCGAATGTTGCAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTGTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAGAGATGGCTGATAAAAAGTACGTATTGAAAGAATCAAAGCTGCTTTCTCATAGTTTATTGAATTTCTCCTCTATATCTGATGATGAATTCTCTAGTCTGGAAATAAACTCTCCTCGTTTGTTACAAATAATAGTTCTTAATGCAACTGTATCTTCTTTGGTCATGTGTCTTGCCACAATACCTTTTCTATGAATGCAT

mRNA sequence

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTGTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAGAGATGGCTGATAAAAAGTACGTATTGAAAGAATCAAAGCTGCTTTCTCATAGTTTATTGAATTTCTCCTCTATATCTGATGATGAATTCTCTAGTCTGGAAATAAACTCTCCTCGTTTGTTACAAATAATAGTTCTTAATGCAACTGTATCTTCTTTGGTCATGTGTCTTGCCACAATACCTTTTCTATGAATGCAT

Coding sequence (CDS)

ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTGTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG

Homology

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BLAST of CmoCh04G009730 vs. Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 92/191 (48.17%), Postives = 123/191 (64.40%), Query Frame = 1


Query: 1   MATVLDS----------LALPSSSVLASTTFSGRRTSLA-LPRYRALKVGHSFTSHSIKS 60
           MA++LDS          +A   SS  A+ + S RR S A    +R LK   S  + S   
Sbjct: 1   MASLLDSVTVTRVFSLPIAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASL 60

Query: 61  ARSNARFTHRSGRVVCE----------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCR 120
             +      R GR+ CE          VP+ S++ WQ++V+ES VPVLVEFWAPWCGPCR
Sbjct: 61  GANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCR 120

Query: 121 MIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPK 171
           MIHP+VD+L+ ++AGKFKFYK+NTDE    A++  IRS+PTVIIFK GEKK++IIGAVP+
Sbjct: 121 MIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPR 180

[Close]

BLAST of CmoCh04G009730 vs. Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-38
Identity = 80/148 (54.05%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 30  LPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVC-------EVPSASEATWQSQVIES 89
           +P +R LK      S S+ S+ S  +F + S  VVC       EV   ++++W+  V+ES
Sbjct: 35  VPTFRGLKRSFPALSSSVSSS-SPRQFRYSS--VVCKASEAVKEVQDVNDSSWKEFVLES 94

Query: 90  GVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVI 149
            VPV+V+FWAPWCGPC++I PV+DEL+ EY+GK   YK+NTDE  GIA+Q  IRSIPTV+
Sbjct: 95  EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 154

Query: 150 IFKNGEKKEAIIGAVPKTTLTDSMDKFL 171
            FKNGE+KE+IIGAVPK+TLTDS++K+L
Sbjct: 155 FFKNGERKESIIGAVPKSTLTDSIEKYL 179

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BLAST of CmoCh04G009730 vs. Swiss-Prot
Match: TRXM5_ORYSJ (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 1


Query: 51  RSNARFTHRSGRVVCEVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSD 110
           R  +RF  +   VV EV  A E  W S V+ S  PVLVEFWAPWCGPCRMI PV+DEL+ 
Sbjct: 51  RPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAK 110

Query: 111 EYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 170
           EY GK K  KVNTD+   IA+   IRSIPTV++FKNGEKKE++IGAVPKTTL   +DK++
Sbjct: 111 EYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170

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BLAST of CmoCh04G009730 vs. Swiss-Prot
Match: TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE=2 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 5.3e-36
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTFSGR--RTSLALP-----RYRALKVGHSFTSHSIKSARSN 60
           MA+ L +     SS LAS + S    R   A+P     RY+AL+    F          N
Sbjct: 1   MASALAASTAVCSSPLASASASASSARRLRAVPPSRGIRYQALRADSGFAG--------N 60

Query: 61  ARFTHRSGRVVC---------EVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPV 120
            R   R   VVC         +VP  +++TWQS V+ES +PVLV +WA WCGPC+MI PV
Sbjct: 61  RRGGGRGASVVCAVQGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPV 120

Query: 121 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 171
           V +LS EY GK K YK+NTDE   IASQ  +RSIPT++IFKNGEKK+A+IGAVP++TL  
Sbjct: 121 VGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLIA 178

[Close]

BLAST of CmoCh04G009730 vs. Swiss-Prot
Match: TRXM1_ORYSJ (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0639900 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.0e-36
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 59  RSGR-----VVC---------EVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPV 118
           RSGR     VVC         +VP  +++TWQS V+ES +PVLVEFWA WCGPC+MI PV
Sbjct: 46  RSGRARGVSVVCAAQGQETSFQVPDVTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPV 105

Query: 119 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 171
           + +LS EY GK   YK+NTDE   IA+Q  IRSIPT++IFKNGEKK+A+IGAVP++TL  
Sbjct: 106 IGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVS 165

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BLAST of CmoCh04G009730 vs. TrEMBL
Match: A0A0A0L5C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104920 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.4e-64
Identity = 126/176 (71.59%), Postives = 144/176 (81.82%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSL LP SS LAST FS RRTSL LP+ R LK+ +SFTSHS++SARSNARF HRS
Sbjct: 1   MATVLDSLTLPCSSALASTAFSARRTSLCLPQCRGLKIANSFTSHSLRSARSNARFPHRS 60

Query: 61  GRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
             +VCE       VP+ASEATW+S V ES +PV+VEFWAPWCGPCRM+HP++D+LS EY 
Sbjct: 61  ATIVCEAQETAAIVPAASEATWESLVTESKLPVMVEFWAPWCGPCRMMHPIIDDLSKEYE 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKF 170
           GKFKFYKV+TD    IAS+  IRSIPTVIIFK+GEKKEAIIGAVPK TLT SM+KF
Sbjct: 121 GKFKFYKVDTDANPSIASRYGIRSIPTVIIFKDGEKKEAIIGAVPKGTLTASMEKF 176

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BLAST of CmoCh04G009730 vs. TrEMBL
Match: E0CSM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02890 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-49
Identity = 108/188 (57.45%), Postives = 131/188 (69.68%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTF-----------SGRRTSLALPRYRALKVGHSFTSHSIKS 60
           MATVLDSLA+P SS L S+ F           SGRR    LP +  LK+  S  S S+ +
Sbjct: 1   MATVLDSLAVPRSSALPSSAFAPIASSPVCFLSGRRGLARLPEFSGLKIQPSLASRSVAA 60

Query: 61  ARSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIH 120
           A  ++R   R G VVCE       VP+  +ATWQS V+++  PVLVEFWAPWCGPCRMIH
Sbjct: 61  AGRSSRVGRRVGGVVCEAQETAVEVPAVIDATWQSLVLDADTPVLVEFWAPWCGPCRMIH 120

Query: 121 PVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTL 171
           PV++EL+ +Y GK K YKVNTDE   IA++  IRSIPTVIIFK+GEKKEAIIGAVPK+TL
Sbjct: 121 PVINELAKQYTGKLKCYKVNTDESPSIATRYGIRSIPTVIIFKSGEKKEAIIGAVPKSTL 180

[Close]

BLAST of CmoCh04G009730 vs. TrEMBL
Match: A0A0K9QL86_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166590 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-47
Identity = 103/187 (55.08%), Postives = 130/187 (69.52%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVL----------ASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSA 60
           MA +L+SLA+P S             +S+T S   TSL LP +R LKV    ++ ++ S 
Sbjct: 1   MAILLESLAIPCSLPFPSASLSPISSSSSTPSSLSTSLKLPEFRGLKVSSGCSTRALGSV 60

Query: 61  RSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHP 120
            S AR   R  R+VCE       +PS +E TW+S V+ES  PV+VEFWAPWCGPCR++ P
Sbjct: 61  TSRARIGRRCSRIVCESSDTTFQLPSVTEETWKSLVLESEFPVIVEFWAPWCGPCRIVQP 120

Query: 121 VVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLT 171
           V+DELS E+AG+ K +KVNTD+ A IAS+  +RSIPTVIIFKNGEKKEAIIGAVPKTTLT
Sbjct: 121 VIDELSKEFAGRLKVFKVNTDDSANIASEYGVRSIPTVIIFKNGEKKEAIIGAVPKTTLT 180

[Close]

BLAST of CmoCh04G009730 vs. TrEMBL
Match: M5WVD9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011915mg PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46
Identity = 112/195 (57.44%), Postives = 130/195 (66.67%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLAST-------------TFSGRRTSLALPRYRALKVGHSFTSHSI 60
           MATVLDSL +P SS L S+             + SGR     L  YR LKVG +  + SI
Sbjct: 1   MATVLDSLVVPRSSALPSSAALSPIAAASSVSSLSGRS---GLRHYRGLKVGSALRTRSI 60

Query: 61  KS-----ARSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWC 120
            S     A   AR   R G VVCE       VP  ++ATWQS V+ES  PVLVEFWAPWC
Sbjct: 61  GSLSYGPAAGGARH-RRGGLVVCEAQDTAVEVPPVTDATWQSLVLESDSPVLVEFWAPWC 120

Query: 121 GPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIG 171
           GPCRMIHP++DEL+ +YAGK K YKVNTDE A IA+Q  IRSIPTVIIFK GEKK+A+IG
Sbjct: 121 GPCRMIHPIIDELAKQYAGKLKCYKVNTDEGAAIATQYGIRSIPTVIIFKGGEKKDAVIG 180

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BLAST of CmoCh04G009730 vs. TrEMBL
Match: A0A0J8BDD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096860 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.8e-46
Identity = 91/165 (55.15%), Postives = 123/165 (74.55%), Query Frame = 1


Query: 13  SSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCE------ 72
           S +  S++ S   +SL LP +R LKV +  ++ +++S  S ++   RS R+VC+      
Sbjct: 22  SPISTSSSSSSLSSSLKLPEFRGLKVSYGVSTRAVRSLSSRSKIVPRSSRIVCDSSESTL 81

Query: 73  -VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDE 132
            +PSA+E TW+S V+ES +PV+VEFWAPWCGPCR++ PV+DELS ++AGK K +KVNTD+
Sbjct: 82  QLPSATEETWKSLVLESDLPVMVEFWAPWCGPCRIVEPVIDELSKDFAGKIKVFKVNTDD 141

Query: 133 EAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 171
              IAS   +RSIPTVIIFKNGEKKEAIIGAVPK+TLT S++KFL
Sbjct: 142 SPTIASDYGVRSIPTVIIFKNGEKKEAIIGAVPKSTLTSSIEKFL 186

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BLAST of CmoCh04G009730 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4)

HSP 1 Score: 171.0 bits (432), Expect = 6.2e-43
Identity = 92/191 (48.17%), Postives = 123/191 (64.40%), Query Frame = 1


Query: 1   MATVLDS----------LALPSSSVLASTTFSGRRTSLA-LPRYRALKVGHSFTSHSIKS 60
           MA++LDS          +A   SS  A+ + S RR S A    +R LK   S  + S   
Sbjct: 1   MASLLDSVTVTRVFSLPIAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASL 60

Query: 61  ARSNARFTHRSGRVVCE----------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCR 120
             +      R GR+ CE          VP+ S++ WQ++V+ES VPVLVEFWAPWCGPCR
Sbjct: 61  GANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCR 120

Query: 121 MIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPK 171
           MIHP+VD+L+ ++AGKFKFYK+NTDE    A++  IRS+PTVIIFK GEKK++IIGAVP+
Sbjct: 121 MIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPR 180

[Close]

BLAST of CmoCh04G009730 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-36
Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 1


Query: 13  SSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCE------ 72
           SS  ++++ S RR    LP    L++  S +  S+ S     R +     VVCE      
Sbjct: 22  SSSPSASSLSSRRMFAVLPESSGLRIRLSLSPASLTSIHQ-PRVSRLRRAVVCEAQETTT 81

Query: 73  -VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDE 132
            +   +++TW S V+++  PV+V+FWAPWCGPC+MI P+V++L+  Y GK KFYK+NTDE
Sbjct: 82  DIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDE 141

Query: 133 EAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 171
                 Q  +RSIPT++IF  GEKK+ IIGAVPKTTLT S+DKFL
Sbjct: 142 SPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

[Close]

BLAST of CmoCh04G009730 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-36
Identity = 74/158 (46.84%), Postives = 102/158 (64.56%), Query Frame = 1


Query: 20  TFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCE-------VPSASE 79
           +FS R+    LP    L+     T  S+ S   N+R +     V+CE       +P  ++
Sbjct: 27  SFSTRQMFSVLPESSGLR-----TRVSLSSLSKNSRVSRLRRGVICEAQDTATGIPVVND 86

Query: 80  ATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQ 139
           +TW S V+++  PV V+FWAPWCGPC+MI P+V+EL+ +YAG+FKFYK+NTDE      Q
Sbjct: 87  STWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQ 146

Query: 140 CAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 171
             +RSIPT++IF NGEKK+ IIGAV K TL  S++KFL
Sbjct: 147 YGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179

[Close]

BLAST of CmoCh04G009730 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-26
Identity = 46/112 (41.07%), Postives = 76/112 (67.86%), Query Frame = 1


Query: 59  RSGRVVCEVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKF 118
           R  R   EV   ++ +W+  V++S  PVLVEF+  WCGPCRM+H ++DE++ +YAGK   
Sbjct: 64  RDSRAAAEV---TQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNC 123

Query: 119 YKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 171
           Y +N D +  +A +  I+++P V++FKNGEK+E+I+G +PK     ++++ L
Sbjct: 124 YLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 172

[Close]

BLAST of CmoCh04G009730 vs. TAIR10
Match: AT1G50320.1 (AT1G50320.1 thioredoxin X)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-16
Identity = 47/150 (31.33%), Postives = 79/150 (52.67%), Query Frame = 1


Query: 26  TSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCE---VPSASEATWQSQVIES 85
           TS+++    +++V     +  + S  S AR T +S   V     +    E+ + S V+ES
Sbjct: 27  TSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSVIRCGGIKEIGESEFSSTVLES 86

Query: 86  GVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVI 145
             PVLVEF A WCGPC++I+P ++ LS EY  K    K++ D    + ++  +  +P  I
Sbjct: 87  AQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFI 146

Query: 146 IFKNGEKKEAI--IGAVPKTTLTDSMDKFL 171
           +FK+G++       GA+ K  L + +D  L
Sbjct: 147 LFKDGKEVPGSRREGAITKAKLKEYIDGLL 176

[Close]

BLAST of CmoCh04G009730 vs. NCBI nr
Match: gi|449431838|ref|XP_004133707.1| (PREDICTED: thioredoxin-like [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 126/176 (71.59%), Postives = 144/176 (81.82%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRS 60
           MATVLDSL LP SS LAST FS RRTSL LP+ R LK+ +SFTSHS++SARSNARF HRS
Sbjct: 1   MATVLDSLTLPCSSALASTAFSARRTSLCLPQCRGLKIANSFTSHSLRSARSNARFPHRS 60

Query: 61  GRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYA 120
             +VCE       VP+ASEATW+S V ES +PV+VEFWAPWCGPCRM+HP++D+LS EY 
Sbjct: 61  ATIVCEAQETAAIVPAASEATWESLVTESKLPVMVEFWAPWCGPCRMMHPIIDDLSKEYE 120

Query: 121 GKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKF 170
           GKFKFYKV+TD    IAS+  IRSIPTVIIFK+GEKKEAIIGAVPK TLT SM+KF
Sbjct: 121 GKFKFYKVDTDANPSIASRYGIRSIPTVIIFKDGEKKEAIIGAVPKGTLTASMEKF 176

[Close]

BLAST of CmoCh04G009730 vs. NCBI nr
Match: gi|359493854|ref|XP_002282265.2| (PREDICTED: thioredoxin M4, chloroplastic [Vitis vinifera])

HSP 1 Score: 202.6 bits (514), Expect = 5.5e-49
Identity = 108/188 (57.45%), Postives = 131/188 (69.68%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTF-----------SGRRTSLALPRYRALKVGHSFTSHSIKS 60
           MATVLDSLA+P SS L S+ F           SGRR    LP +  LK+  S  S S+ +
Sbjct: 1   MATVLDSLAVPRSSALPSSAFAPIASSPVCFLSGRRGLARLPEFSGLKIQPSLASRSVAA 60

Query: 61  ARSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIH 120
           A  ++R   R G VVCE       VP+  +ATWQS V+++  PVLVEFWAPWCGPCRMIH
Sbjct: 61  AGRSSRVGRRVGGVVCEAQETAVEVPAVIDATWQSLVLDADTPVLVEFWAPWCGPCRMIH 120

Query: 121 PVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTL 171
           PV++EL+ +Y GK K YKVNTDE   IA++  IRSIPTVIIFK+GEKKEAIIGAVPK+TL
Sbjct: 121 PVINELAKQYTGKLKCYKVNTDESPSIATRYGIRSIPTVIIFKSGEKKEAIIGAVPKSTL 180

[Close]

BLAST of CmoCh04G009730 vs. NCBI nr
Match: gi|697148344|ref|XP_009628353.1| (PREDICTED: thioredoxin-like [Nicotiana tomentosiformis])

HSP 1 Score: 198.7 bits (504), Expect = 7.9e-48
Identity = 104/186 (55.91%), Postives = 135/186 (72.58%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLAST---------TFSGRRTSLALPRYRALKVGHSFTSHSIKSAR 60
           MA VL+++A+P +S L+S          +FSGRR+S+   ++R LKV  S +  S+ S  
Sbjct: 1   MAGVLETIAVPRASALSSARLAPIADSNSFSGRRSSVNFSQFRGLKVQQSRSPVSLSSTS 60

Query: 61  SNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPV 120
            + R   R GR+VCE       VP+ ++ TW+S VIES +PVLVEFWAPWCGPCRMIHPV
Sbjct: 61  YSVR---RGGRIVCEAQETAVQVPAVTDKTWKSLVIESDLPVLVEFWAPWCGPCRMIHPV 120

Query: 121 VDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTD 171
           + ELS EYAGKFKF+++NTDE    AS+  IRSIPTV+IFK+GEKK+A+IGAVPKTTLT 
Sbjct: 121 IGELSQEYAGKFKFFQLNTDESPSTASEYGIRSIPTVMIFKDGEKKDAVIGAVPKTTLTT 180

[Close]

BLAST of CmoCh04G009730 vs. NCBI nr
Match: gi|1009170265|ref|XP_015866106.1| (PREDICTED: thioredoxin-1 [Ziziphus jujuba])

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 104/188 (55.32%), Postives = 132/188 (70.21%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVLASTTFS-----------GRRTSLALPRYRALKVGHSFTSHSIKS 60
           MATVL+SLA+P  S L S T S           GRR    L ++R L++ HS  + S+ S
Sbjct: 1   MATVLESLAVPRCSALPSNTLSPVAASSISSPSGRRR---LSQFRGLQLRHSLVTRSLGS 60

Query: 61  ARSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIH 120
               +R + R G +VCE       VP+ ++A+W+S V+ES  PVLVEFWAPWCGPCRMIH
Sbjct: 61  VSFGSRGSRRGGLIVCEAQETAVQVPAVTDASWKSSVLESDFPVLVEFWAPWCGPCRMIH 120

Query: 121 PVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTL 171
           P++D+L+ +YAGK K YKVNTDE   IA+Q  IRSIPTVIIFK+GEKK+AIIGAVPK+TL
Sbjct: 121 PIIDDLAKQYAGKLKCYKVNTDESPSIATQYGIRSIPTVIIFKDGEKKDAIIGAVPKSTL 180

[Close]

BLAST of CmoCh04G009730 vs. NCBI nr
Match: gi|902171525|gb|KNA08009.1| (hypothetical protein SOVF_166590 [Spinacia oleracea])

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-47
Identity = 103/187 (55.08%), Postives = 130/187 (69.52%), Query Frame = 1


Query: 1   MATVLDSLALPSSSVL----------ASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSA 60
           MA +L+SLA+P S             +S+T S   TSL LP +R LKV    ++ ++ S 
Sbjct: 1   MAILLESLAIPCSLPFPSASLSPISSSSSTPSSLSTSLKLPEFRGLKVSSGCSTRALGSV 60

Query: 61  RSNARFTHRSGRVVCE-------VPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHP 120
            S AR   R  R+VCE       +PS +E TW+S V+ES  PV+VEFWAPWCGPCR++ P
Sbjct: 61  TSRARIGRRCSRIVCESSDTTFQLPSVTEETWKSLVLESEFPVIVEFWAPWCGPCRIVQP 120

Query: 121 VVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLT 171
           V+DELS E+AG+ K +KVNTD+ A IAS+  +RSIPTVIIFKNGEKKEAIIGAVPKTTLT
Sbjct: 121 VIDELSKEFAGRLKVFKVNTDDSANIASEYGVRSIPTVIIFKNGEKKEAIIGAVPKTTLT 180

The following BLAST results are available for this feature:

BLAST of CmoCh04G009730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXM4_ARATH	1.1e-41	48.17	Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2	[more]
TRXM_SPIOL	2.6e-38	54.05	Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2	[more]
TRXM5_ORYSJ	1.8e-36	60.83	Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1	[more]
TRXM2_ORYSJ	5.3e-36	47.85	Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE...	[more]
TRXM1_ORYSJ	7.0e-36	57.94	Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0639900 PE...	[more]

BLAST of CmoCh04G009730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5C6_CUCSA	9.4e-64	71.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104920 PE=4 SV=1	[more]
E0CSM0_VITVI	3.8e-49	57.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02890 PE=4 SV=...	[more]
A0A0K9QL86_SPIOL	2.1e-47	55.08	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166590 PE=4 SV=1	[more]
M5WVD9_PRUPE	1.0e-46	57.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011915mg PE=4 SV=1	[more]
A0A0J8BDD0_BETVU	8.8e-46	55.15	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096860 PE=4 S...	[more]

BLAST of CmoCh04G009730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15360.1	6.2e-43	48.17	thioredoxin M-type 4	[more]
AT4G03520.1	1.5e-36	46.06	Thioredoxin superfamily protein	[more]
AT1G03680.1	1.9e-36	46.84	thioredoxin M-type 1	[more]
AT2G15570.2	5.3e-26	41.07	Thioredoxin superfamily protein	[more]
AT1G50320.1	2.9e-16	31.33	thioredoxin X	[more]

BLAST of CmoCh04G009730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431838\|ref\|XP_004133707.1\|	1.3e-63	71.59	PREDICTED: thioredoxin-like [Cucumis sativus]	[more]
gi\|359493854\|ref\|XP_002282265.2\|	5.5e-49	57.45	PREDICTED: thioredoxin M4, chloroplastic [Vitis vinifera]	[more]
gi\|697148344\|ref\|XP_009628353.1\|	7.9e-48	55.91	PREDICTED: thioredoxin-like [Nicotiana tomentosiformis]	[more]
gi\|1009170265\|ref\|XP_015866106.1\|	1.8e-47	55.32	PREDICTED: thioredoxin-1 [Ziziphus jujuba]	[more]
gi\|902171525\|gb\|KNA08009.1\|	3.0e-47	55.08	hypothetical protein SOVF_166590 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006109	regulation of carbohydrate metabolic process
biological_process	GO:0009735	response to cytokinin
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005618	cell wall
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0019904	protein domain specific binding
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009730.1	CmoCh04G009730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 18..170 score: 2.3
IPR005746	Thioredoxin	TIGRFAMs	TIGR01068	TIGR01068	coord: 72..169 score: 2.1
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 70..169 score: 3.3
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 66..170 score: 4.46
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 69..168 score: 8.6
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 45..170 score: 13
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 87..105 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 94..103 score: 2.1E-8coord: 86..94 score: 2.1E-8coord: 134..145 score: 2.
None	No IPR available	PANTHER	PTHR10438:SF300	THIOREDOXIN M1, CHLOROPLASTIC-RELATED	coord: 18..170 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009730	Cucsa.074740	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009730	CmaCh16G007820	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009730	CmaCh04G009060	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009730	Cla011786	Watermelon (97103) v1	cmowmB674
CmoCh04G009730	Csa3G104920	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009730	MELO3C016516	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009730	ClCG10G006910	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009730	CSPI03G06150	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009730	Lsi05G007150	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009730	Cp4.1LG14g00290	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009730	Cp4.1LG01g08570	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009730	MELO3C016516.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009730	CsaV3_3G006270	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009730	Cla97C10G190770	Watermelon (97103) v2	cmowmbB689
CmoCh04G009730	Bhi11G000611	Wax gourd	cmowgoB0814
CmoCh04G009730	CsGy3G006250	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009730	Carg00024	Silver-seed gourd	carcmoB0923
CmoCh04G009730	Carg21080	Silver-seed gourd	carcmoB0645

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009730	CmoCh16G008450	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:

None