CSPI03G06150 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCAACGTGTTATAATTTTATTGGTCTGTATTTGAACTTGAATCAACGTCACGGTGTGCCACTCCCCAGCACCCTCATCCATTCGTCCTCCATCCATTGACACATCAAACCCAAAACCCAATTCCCTAATTTTGCCCAAACCCCCCTCTCTCTCTCTCTCTCTCTCTCTCACCCACAACCACCATCACCACCCATCAATCCCTTCCTTCGATGGCGACGGTTCTCGATTCCCTCACTCTTCCTTGTTCATCCGCCTTGGCTTCCACCGCTTTCTCTGCCCGTCGCACCTCCCTTTGCCTCCCGCAGTGCAGAGGCTTGAAGATCGCAAACAGCTTCACTTCTCACTCTCTACGATCTGCCAGATCTAATGCTAGATTTCCTCACCGTTCTGCAACTATCGTTTGCGAAGCTCAGGAAACTGCTGCCATTGGTTGGGATTTTGTTCTCCTATTTTCTTTTACTGTCGTTTTTCTCTTGTTTGGAGAAATGAGGAAGTGAAACTTTTGACGATATTTGGATGTTTGGTGGATTTAAGATCATGTTCTTAGTAGCTATTGGTGTTTGGTTTGGTTTGATTTGATTTCGTTTAGATACTTATGAAACTCGACGTGTGTGCGATTAATGAATAATATGTTAAAGCACCTCTAGAGTTATGACTTATACGTCAGATCATGATGAGTTTAACTTTTTATGTATATGCATAATATAAAATTAGAGCGAAAACTAAAAAAGTAACTAAAAAAGAAGTCAGTTTGGTGGATTGATACTGACACGGTATAACAGATCATTTCCTGTTTGAATTTATGTACTTGTCAATATTCATTCCATATCCTTGCATTTTCTTTGATCTGAATATAAAATTCAGTGATACTAAGTTGGGATGAATCTGTTGTCCTGTTTAGAAAGGCTTCTAATTGATTTTTTCAAACTCTTAAAAAAATCGTTACAAATAGGCTCTGAATTGGGCTGTTGAAATGTGTTTCCATTTTGAAGTGAAAGCTTGAGCTTTAAAATTTCTAACGACTTAATACATTGACCATATATTATTACCCGAGATGATGCCTTAGGCAATCAGTGGACACCCAATTGGTGAGTCACAGACCAATTTTGTCAACACATCCTTGAAAGGGACCTGTGCTTGTAAGAGTTGTCACTAAGCATTAGGAGTAATAGTTGCTAATTGAGTAGATGATTTCTGCTGTGCCTGGGTCTTAACGATGCCACTAAGAGTGATCAGTAGGGAGCTGGTCTGATATTGGCTCAATATGTTGGGAAAATGCCCCAGTTGTTTTTCTCTTATGTCCTGTTCTCTCATCCCACACTTTTCGTGTGTATGAGTGAGTGTGTTTCTGTATGCATCTTGATTTATTGTATTGTATGGCGTCAGATTCTGAGTCTTTAACAATCGGTGTAAGTATTAACATTGAAATGTTATAGCACATGCGTTGATTGTTGTCGTTCCAGCATATTGTATTTTAATTGTTATTCTGAATGATTGGTATGAAATAACAGCTCTTGAACTGTCGAAACGGTAAATGGTACATTTCAGCTATCTTTATATTCTAATATACAAGCATGCGCACATACATACACTTTGTATGTAGTGTATATAGTTCATAAGTGTTTGTTCAGTTGCTAGTCTTTTTTTTTTTTTTTACCAATTTGATCAGAGAACTCCATTTGTTTCTGTATTGAGGGGTTTACTTGTATCAAAATTTTCCATATCTGCTTTCATATACCCGACATTTATTTTATTTATGAGATCATGGGAAGAAGACTTTGAAAATTTCTGTTTGGACCTTAAGAATTGCGACACTTTTAACTGACTTTGTTTTCAGATCTCTGTATCATTGTTTATACTTATTTTTAATCACTTGCTGTGATGTTGATATTAATCCGGGAGAGGCACAATACTCATTTTATGTTAGTATCTTCTCTGCTGCCTACCTCATTGGAGGTCGATAATATTACCTGCACCTACTTTTTCTCTCCTCGAAAAAGCATTGTTGTGGTTAATTGAAATTGCATGTTTCTTGAATGTTGCAGTACCTGCTGCTTCAGAAGCTACCTGGGAGTCACTAGTTACAGAATCTAAATTGCCCGTCATGGTAGAATTTTGGGCTCCATGGTGCGGTCCTTGCCGCATGATGCATCCAATCATTGATGATTTATCAAAAGAGTATGAAGGAAAGTTCAAATTTTACAAGGTGGATACTGATGCCAACCCTTCGATTGCATCCCGTTATGGTATCAGAAGCATACCTACTGTGATTATCTTTAAAGATGGTGAGAAGAAAGAGGCAATAATAGGTGCAGTTCCTAAAGGAACTTTGACAGCCAGTATGGAAAAATTCTCGTAGAGATGGCTAATATAAAGTACGAATTGTAAGATTTAAGCTGCTTTCCCATTATTTCCTTAATTTTAGCTTCTAATATCTGAAGATGAATTCTCTACTCTGGAAATAAACTCTCCTCTTTTGTTACATATAGTTCCTTGATGCTTCTGTATCTTCTTTAGGTTGTATCTATTGCTGCAATACTTTCACTATGAATGCATCTTTCATATGTACAATTATTTTAATATACATGAAATTCTTCGATGTATTGATATTTGTATTAATCTTCTGCTGGAATGCATGAATTACTTGCCACATTGAATTGTAGAGAACTTTTGGTACATATTTTAAAGGTATTCTCTACAAGTGGCCAGGTATTCTCTTCCATGCTTGAAACTCTTGTTATAACAAAAAGCTCAGTAATGACTTGGGCGTTGGAGGCATTGTCGCAAGTAATTCCACTTTGATGCCCATGCTCTCCTTGTTCTTTAGGTTACGCATTCATCTCTGAATTGAAAATTCACACCGGCATTGTCAAGTGAAGTTCAAGAG ATGGCGACGGTTCTCGATTCCCTCACTCTTCCTTGTTCATCCGCCTTGGCTTCCACCGCTTTCTCTGCCCGTCGCACCTCCCTTTGCCTCCCGCAGTGCAGAGGCTTGAAGATCGCAAACAGCTTCACTTCTCACTCTCTACGATCTGCCAGATCTAATGCTAGATTTCCTCACCGTTCTGCAACTATCGTTTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGAGTCACTAGTTACAGAATCTAAATTGCCCGTCATGGTAGAATTTTGGGCTCCATGGTGCGGTCCTTGCCGCATGATGCATCCAATCATTGATGATTTATCAAAAGAGTATGAAGGAAAGTTCAAATTTTACAAGGTGGATACTGATGCCAACCCTTCGATTGCATCCCGTTATGGTATCAGAAGCATACCTACTGTGATTATCTTTAAAGATGGTGAGAAGAAAGAGGCAATAATAGGTGCAGTTCCTAAAGGAACTTTGACAGCCAGTATGGAAAAATTCTCGTAG ATGGCGACGGTTCTCGATTCCCTCACTCTTCCTTGTTCATCCGCCTTGGCTTCCACCGCTTTCTCTGCCCGTCGCACCTCCCTTTGCCTCCCGCAGTGCAGAGGCTTGAAGATCGCAAACAGCTTCACTTCTCACTCTCTACGATCTGCCAGATCTAATGCTAGATTTCCTCACCGTTCTGCAACTATCGTTTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGAGTCACTAGTTACAGAATCTAAATTGCCCGTCATGGTAGAATTTTGGGCTCCATGGTGCGGTCCTTGCCGCATGATGCATCCAATCATTGATGATTTATCAAAAGAGTATGAAGGAAAGTTCAAATTTTACAAGGTGGATACTGATGCCAACCCTTCGATTGCATCCCGTTATGGTATCAGAAGCATACCTACTGTGATTATCTTTAAAGATGGTGAGAAGAAAGAGGCAATAATAGGTGCAGTTCCTAAAGGAACTTTGACAGCCAGTATGGAAAAATTCTCGTAG
BLAST of CSPI03G06150 vs. Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2) HSP 1 Score: 173.7 bits (439), Expect = 1.8e-42 Identity = 93/190 (48.95%), Postives = 128/190 (67.37%), Query Frame = 1
BLAST of CSPI03G06150 vs. Swiss-Prot
Match: TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE=2 SV=2) HSP 1 Score: 172.9 bits (437), Expect = 3.1e-42 Identity = 93/183 (50.82%), Postives = 128/183 (69.95%), Query Frame = 1
BLAST of CSPI03G06150 vs. Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2) HSP 1 Score: 167.2 bits (422), Expect = 1.7e-40 Identity = 82/172 (47.67%), Postives = 120/172 (69.77%), Query Frame = 1
BLAST of CSPI03G06150 vs. Swiss-Prot
Match: TRXM1_ORYSJ (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0639900 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40 Identity = 88/172 (51.16%), Postives = 122/172 (70.93%), Query Frame = 1
BLAST of CSPI03G06150 vs. Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=2 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.4e-39 Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 1
BLAST of CSPI03G06150 vs. TrEMBL
Match: A0A0A0L5C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104920 PE=4 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 5.3e-94 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of CSPI03G06150 vs. TrEMBL
Match: E0CSM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02890 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 9.2e-54 Identity = 115/187 (61.50%), Postives = 138/187 (73.80%), Query Frame = 1
BLAST of CSPI03G06150 vs. TrEMBL
Match: W9QYV9_9ROSA (Thioredoxin M4 OS=Morus notabilis GN=L484_002920 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 3.5e-53 Identity = 114/186 (61.29%), Postives = 140/186 (75.27%), Query Frame = 1
BLAST of CSPI03G06150 vs. TrEMBL
Match: A0A059BUW0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03319 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49 Identity = 106/189 (56.08%), Postives = 132/189 (69.84%), Query Frame = 1
BLAST of CSPI03G06150 vs. TrEMBL
Match: B9S2L1_RICCO (Thioredoxin m(Mitochondrial)-type, putative OS=Ricinus communis GN=RCOM_1209610 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48 Identity = 110/186 (59.14%), Postives = 140/186 (75.27%), Query Frame = 1
BLAST of CSPI03G06150 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4) HSP 1 Score: 173.7 bits (439), Expect = 1.0e-43 Identity = 93/190 (48.95%), Postives = 128/190 (67.37%), Query Frame = 1
BLAST of CSPI03G06150 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein) HSP 1 Score: 167.2 bits (422), Expect = 9.4e-42 Identity = 82/172 (47.67%), Postives = 120/172 (69.77%), Query Frame = 1
BLAST of CSPI03G06150 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1) HSP 1 Score: 163.3 bits (412), Expect = 1.4e-40 Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 1
BLAST of CSPI03G06150 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein) HSP 1 Score: 102.1 bits (253), Expect = 3.7e-22 Identity = 56/169 (33.14%), Postives = 98/169 (57.99%), Query Frame = 1
BLAST of CSPI03G06150 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2) HSP 1 Score: 87.8 bits (216), Expect = 7.3e-18 Identity = 41/104 (39.42%), Postives = 67/104 (64.42%), Query Frame = 1
BLAST of CSPI03G06150 vs. NCBI nr
Match: gi|449431838|ref|XP_004133707.1| (PREDICTED: thioredoxin-like [Cucumis sativus]) HSP 1 Score: 351.7 bits (901), Expect = 7.7e-94 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
BLAST of CSPI03G06150 vs. NCBI nr
Match: gi|359493854|ref|XP_002282265.2| (PREDICTED: thioredoxin M4, chloroplastic [Vitis vinifera]) HSP 1 Score: 218.0 bits (554), Expect = 1.3e-53 Identity = 115/187 (61.50%), Postives = 138/187 (73.80%), Query Frame = 1
BLAST of CSPI03G06150 vs. NCBI nr
Match: gi|703084566|ref|XP_010092509.1| (Thioredoxin M4 [Morus notabilis]) HSP 1 Score: 216.1 bits (549), Expect = 5.0e-53 Identity = 114/186 (61.29%), Postives = 140/186 (75.27%), Query Frame = 1
BLAST of CSPI03G06150 vs. NCBI nr
Match: gi|1009170265|ref|XP_015866106.1| (PREDICTED: thioredoxin-1 [Ziziphus jujuba]) HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51 Identity = 112/184 (60.87%), Postives = 133/184 (72.28%), Query Frame = 1
BLAST of CSPI03G06150 vs. NCBI nr
Match: gi|697148344|ref|XP_009628353.1| (PREDICTED: thioredoxin-like [Nicotiana tomentosiformis]) HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50 Identity = 109/185 (58.92%), Postives = 138/185 (74.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|