Carg21080 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCTTCCGCCTTGGCTTCCACTGCTTTCTCCGGCCGTCGGAGCTCCGTCGCCCTCCCGCAGTACAGAGGCTTGAAGATCGGTCACAGTTTAACTTCCCAGTCTATAAGATCTGCGAGATCTAATGCCAGATTTGCTCAGCGTTCTGGAAGAATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGGTTGGGATTTTGTTCTGCAATTTTCTTTTTCTGTCTTTTTCTGTTGTTTGGAGGGTAGAAGAAAGGAAATTTTAACAATACTAGAAAGTTTGATGAATTTAAGAGCATGCTGTTAGTATCTACTGGTGTTTGGTTTGGTTTAGATTCGCATGAAACTCATCGTGTCTCCAATTAGTAAACAATATGATAGAGCTCCACTAGAGTTAACTTATAAGCGTCAGCTTAAGGCACGTTTAACCTATTCAGTATATGCTTAATATAAATTAGAGAGAAAGGAAAGATAAAAGAAAGAATGAGATCAGTTGTTGGAGTGATGTTGACATGATATGACAAATCATTTTCTGTTTGAATTTATGTACTTGTCATATTTTTGTACTCTGATACCTGACGGATATATGGATGTTGCGTATTCCCATCCATGCACATGCTTGGATATGATGTAAATTACTGTGATGAATTTTGATGTCGAATGACTCTTCAAGTGCTTAAAAAAGTACTTTTGAGTGAAAAGAGATGCTTTTAAGCACTAAAAAAGCAATTCTAAAGAGCCTTAATTGGACCTTATAAATGTGTTTCAGTTTGAGCATTAAAATTGTTTACGAATCACTCCATTAACCATAAAGATCGATCATATAGAGTTGTTTACACACATTTAGCTTCCAAATATTTTAATATGATATTGTTTTGAGCCAATATCAGGCCTGCTCCATACCTCTCCAGTGGAGGATTTCTGTGTTTGATGCTGTTAGAAGAGAGGTGCCTCCAGTACCAACTTAAGCAGAAAATGAGGGGAATGTACTGCATATTATTAAGGGTTCGTGTGTGGTATATATATATTATATGAGATTGGAGTAATTTTTTGTTTTGTTATGTCTTTAGTTTGGCTCCGGTCTCTAGGATGAATATATGTAAGGCCTTTTATATGATTTCCCCCCCCCCCCCCCCCCCCTCTCCAGTTCGTTAATATATGTTATTACCTGAGAGGCTGAGATGATGCCCTAGGCAATCAGTAGACTCTCAATCGGTGAGTGTCAAACCTATTCAGTCAATGCACCCTTGACCGGGACCGAGATCTCTGACTGAAAGAGATGGTCTCTGGGCGGGAGGTTGTCACTTAGCATTAGGAGTAGTAGTTGCCAATTGAGAAGATGGTTTCTGCTGTGCCTAGGTCTTAATGATGCTACAGAGAGTGGTCAGTAAGGAGCTGGTCTGATATTGGCTCAATATGTTGGGAGAAAGTGTTCTAATTGTCTCTCTCCTGGTTCTGCCCAGTTCCGCCATCCCTCTCTTTTGTGTGTGTATGAGTGAGCCTGTTTCTTTATGTATCTTGGTTTGCATAGGAGCCAGTGTTTATCTTGTATGGCATGAAGTACATAATCATTTACAATAGGTACAACGTCGAAATTATAACATGCATGTGTTGGTGGTTGTTGTTCCTGCACGTTTTATTTTGATTGTTATCTTACATCATTGCTATGAAATAACAGCTGTTTAAGCATCAAAAGGTGTAAGAAATGTTGCATTTCAGGTACCTTTATATCCTATTACACACACTTATGCACATACACACACTTTGTCCGTGGTGTATATAGCTCAGAAGTATTGTCTAACTGCTTGTCAATTTTTGAAAAATGTAATTCAATTAGAGAGTTCCGACTGTTTTTATATTGGGGAGCTAACTTATTTCAATTTTTATTAGATCATGGGATGGGGGCATAGAAATTTTCTGTTTGAACCTTTCAACTGACTCTGAGTTCAGGTCTTTGTATCATTGGTTGTACTTTTTTTTTTCTTGATCACTTGCTTTGATGTTGATATTAATCCTGGAGAGTCACAGTACTGGAATCATTTTCTAGTCTGATCATTATAGGAACTTGTTATCCATAAAATTATGCTTTAATCTATGTTCTGTTTTGACTCTTCTCTGCTGGCTACCTGATTCTTGGGTCAATAATATTACCTACACCTACTTTTTCTGTCTCTCGAACTTTCTTCTCCCCGAAAAGGGCCCTTGTTGAGCTTACAAGAAATCACATGTTTGTCGAATGTTTCAGTACCTGCTGCTTCAGAAGCTACCTGGGATTCACTGGTTCTTAAATCCGAATTACCCGTCCTAGTCGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCGATCGTTGACGAACTATCTAAACAGTATGCTGGTAAGTTCAAATTTTACAAGGTGGATACTGATAGCAACTCTGGTGTTGCATCCCGATATGGTATCAGAAGCATACCAACTGTCATTATCTTCAAAGATGGTGAGAAAAAGGAGGCAATAATAGGTGCAGTTCCCAAAGCAACTTTGACTGCCAGCATTGAAAAATTCTTGTAG ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCTTCCGCCTTGGCTTCCACTGCTTTCTCCGGCCGTCGGAGCTCCGTCGCCCTCCCGCAGTACAGAGGCTTGAAGATCGGTCACAGTTTAACTTCCCAGTCTATAAGATCTGCGAGATCTAATGCCAGATTTGCTCAGCGTTCTGGAAGAATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGATTCACTGGTTCTTAAATCCGAATTACCCGTCCTAGTCGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCGATCGTTGACGAACTATCTAAACAGTATGCTGGTAAGTTCAAATTTTACAAGGTGGATACTGATAGCAACTCTGGTGTTGCATCCCGATATGGTATCAGAAGCATACCAACTGTCATTATCTTCAAAGATGGTGAGAAAAAGGAGGCAATAATAGGTGCAGTTCCCAAAGCAACTTTGACTGCCAGCATTGAAAAATTCTTGTAG ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCTTCCGCCTTGGCTTCCACTGCTTTCTCCGGCCGTCGGAGCTCCGTCGCCCTCCCGCAGTACAGAGGCTTGAAGATCGGTCACAGTTTAACTTCCCAGTCTATAAGATCTGCGAGATCTAATGCCAGATTTGCTCAGCGTTCTGGAAGAATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGATTCACTGGTTCTTAAATCCGAATTACCCGTCCTAGTCGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCGATCGTTGACGAACTATCTAAACAGTATGCTGGTAAGTTCAAATTTTACAAGGTGGATACTGATAGCAACTCTGGTGTTGCATCCCGATATGGTATCAGAAGCATACCAACTGTCATTATCTTCAAAGATGGTGAGAAAAAGGAGGCAATAATAGGTGCAGTTCCCAAAGCAACTTTGACTGCCAGCATTGAAAAATTCTTGTAG MATVLDSLTLPCSSALASTAFSGRRSSVALPQYRGLKIGHSLTSQSIRSARSNARFAQRSGRIVCEAQETAAIVPAASEATWDSLVLKSELPVLVEFWAPWCGPCRMIHPIVDELSKQYAGKFKFYKVDTDSNSGVASRYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASIEKFL
BLAST of Carg21080 vs. NCBI nr
Match: XP_022929416.1 (uncharacterized protein LOC111435994 [Cucurbita moschata]) HSP 1 Score: 344.7 bits (883), Expect = 1.8e-91 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
BLAST of Carg21080 vs. NCBI nr
Match: XP_022984702.1 (uncharacterized protein LOC111482904 [Cucurbita maxima] >XP_023552432.1 uncharacterized protein LOC111810091 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.2 bits (879), Expect = 5.3e-91 Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Carg21080 vs. NCBI nr
Match: XP_004133707.1 (PREDICTED: thioredoxin-like [Cucumis sativus] >KGN56239.1 hypothetical protein Csa_3G104920 [Cucumis sativus]) HSP 1 Score: 294.7 bits (753), Expect = 2.1e-76 Identity = 146/176 (82.95%), Postives = 161/176 (91.48%), Query Frame = 0
BLAST of Carg21080 vs. NCBI nr
Match: XP_022142885.1 (uncharacterized protein LOC111012890 [Momordica charantia]) HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74 Identity = 140/178 (78.65%), Postives = 164/178 (92.13%), Query Frame = 0
BLAST of Carg21080 vs. NCBI nr
Match: XP_022941602.1 (uncharacterized protein LOC111446910 isoform X1 [Cucurbita moschata]) HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71 Identity = 136/177 (76.84%), Postives = 157/177 (88.70%), Query Frame = 0
BLAST of Carg21080 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4) HSP 1 Score: 191.8 bits (486), Expect = 3.6e-49 Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 0
BLAST of Carg21080 vs. TAIR10
Match: AT4G03520.1 (Thioredoxin superfamily protein) HSP 1 Score: 174.1 bits (440), Expect = 7.7e-44 Identity = 86/173 (49.71%), Postives = 122/173 (70.52%), Query Frame = 0
BLAST of Carg21080 vs. TAIR10
Match: AT1G03680.1 (thioredoxin M-type 1) HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43 Identity = 82/158 (51.90%), Postives = 115/158 (72.78%), Query Frame = 0
BLAST of Carg21080 vs. TAIR10
Match: AT2G15570.2 (Thioredoxin superfamily protein) HSP 1 Score: 115.5 bits (288), Expect = 3.2e-26 Identity = 55/141 (39.01%), Postives = 90/141 (63.83%), Query Frame = 0
BLAST of Carg21080 vs. TAIR10
Match: AT1G76760.1 (thioredoxin Y1) HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17 Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 0
BLAST of Carg21080 vs. Swiss-Prot
Match: sp|Q9SEU6|TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g15360 PE=2 SV=2) HSP 1 Score: 191.8 bits (486), Expect = 6.4e-48 Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 0
BLAST of Carg21080 vs. Swiss-Prot
Match: sp|Q9SEU8|TRXM2_ARATH (Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g03520 PE=1 SV=2) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-42 Identity = 86/173 (49.71%), Postives = 122/173 (70.52%), Query Frame = 0
BLAST of Carg21080 vs. Swiss-Prot
Match: sp|O48737|TRXM1_ARATH (Thioredoxin M1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g03680 PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.4e-42 Identity = 82/158 (51.90%), Postives = 115/158 (72.78%), Query Frame = 0
BLAST of Carg21080 vs. Swiss-Prot
Match: sp|Q9XGS0|TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus OX=3708 PE=1 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 6.9e-42 Identity = 82/164 (50.00%), Postives = 116/164 (70.73%), Query Frame = 0
BLAST of Carg21080 vs. Swiss-Prot
Match: sp|Q7X8R5|TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0530600 PE=2 SV=2) HSP 1 Score: 168.7 bits (426), Expect = 5.8e-41 Identity = 93/182 (51.10%), Postives = 127/182 (69.78%), Query Frame = 0
BLAST of Carg21080 vs. TrEMBL
Match: tr|A0A0A0L5C6|A0A0A0L5C6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104920 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76 Identity = 146/176 (82.95%), Postives = 161/176 (91.48%), Query Frame = 0
BLAST of Carg21080 vs. TrEMBL
Match: tr|E0CSM0|E0CSM0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02890 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58 Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 0
BLAST of Carg21080 vs. TrEMBL
Match: tr|A0A2N9ENA3|A0A2N9ENA3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4155 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.4e-55 Identity = 116/186 (62.37%), Postives = 145/186 (77.96%), Query Frame = 0
BLAST of Carg21080 vs. TrEMBL
Match: tr|W9QYV9|W9QYV9_9ROSA (Thioredoxin M4 OS=Morus notabilis OX=981085 GN=L484_002920 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 3.1e-55 Identity = 117/187 (62.57%), Postives = 144/187 (77.01%), Query Frame = 0
BLAST of Carg21080 vs. TrEMBL
Match: tr|A0A1S4DRW2|A0A1S4DRW2_TOBAC (thioredoxin-like OS=Nicotiana tabacum OX=4097 GN=LOC107832514 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 4.0e-55 Identity = 113/186 (60.75%), Postives = 144/186 (77.42%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |