CmoCh17G008780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G008780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant/F20B17-9 protein
Location	Cmo_Chr17 : 7998302 .. 7998589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

mRNA sequence

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Coding sequence (CDS)

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Homology

[Close]

BLAST of CmoCh17G008780 vs. TrEMBL
Match: A0A0A0K6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.7e-35
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
           MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 27  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 86

Query: 63  SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 87  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780 vs. TrEMBL
Match: A0A0L9VFP9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g254400 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780 vs. TrEMBL
Match: V7BTB8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G195900g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.3e-29
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G S++C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GPSATCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780 vs. TrEMBL
Match: A0A151S136_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029832 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 72/94 (76.60%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  RSPS  + F  DEL  WSTLVQRHRFLL+ALVLL  LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLRSPSLRRQFAKDELGSWSTLVQRHRFLLSALVLLAILCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          GSS +C GLTGAQKA C  ELVK SMAKGKLKIL
Sbjct: 61 GSSGTCSGLTGAQKASCHMELVKDSMAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780 vs. TrEMBL
Match: A0A0R0FWS3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G063700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 70/94 (74.47%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
           MVLDS L+SP  +SPSF + FT DEL  WSTL QRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 15  MVLDSILTSPRLKSPSFRRQFTKDELGSWSTLFQRHRFLLSALVLLTLLCTVYLYFAVTL 74

Query: 63  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 75  GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 108

[Close]

BLAST of CmoCh17G008780 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-22
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR     K + DEL  WSTL+QRH++LLTAL LL  LCT+YLYFAVTLG
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW-DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLG 60

Query: 63 S-SSSCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +  SSC+GLTG  KA C  +LV+ +++KGKLK
Sbjct: 61 ARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

[Close]

BLAST of CmoCh17G008780 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-18
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR P   K   D+L   ST+VQRHRFLLTA++LL  LCTIY+YFAVTLG
Sbjct: 1  MVLDGIVSSPLRR-PHALKKQWDDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTLG 60

Query: 63 SSS-SCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +    C G+TG  KA C  E ++ S + GKLK
Sbjct: 61 ARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: gi|778728887|ref|XP_011659492.1| (PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 1  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: gi|700189975|gb|KGN45208.1| (hypothetical protein Csa_7G431400 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
           MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 27  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 86

Query: 63  SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 87  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: gi|659122533|ref|XP_008461194.1| (PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 2   HMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 61
           +MVLDS LSSPHRRSPSF KSF +EL  WSTL+QRHRFLLTALVLLT LCTIYLYFAVTL
Sbjct: 10  NMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTIYLYFAVTL 69

Query: 62  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           GSSSSC+GLTG QKA+C  EL KTS+AKGKLKIL
Sbjct: 70  GSSSSCYGLTGTQKAQCQLELAKTSIAKGKLKIL 103

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: gi|920712636|gb|KOM53885.1| (hypothetical protein LR48_Vigan09g254400 [Vigna angularis])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: gi|593695585|ref|XP_007148291.1| (hypothetical protein PHAVU_006G195900g [Phaseolus vulgaris])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G S++C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GPSATCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

The following BLAST results are available for this feature:

BLAST of CmoCh17G008780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G008780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S1_CUCSA	8.7e-35	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1	[more]
A0A0L9VFP9_PHAAN	7.2e-29	76.60	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g254400 PE=4 SV=1	[more]
V7BTB8_PHAVU	9.3e-29	76.60	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G195900g PE=4 SV=1	[more]
A0A151S136_CAJCA	3.5e-28	76.60	Uncharacterized protein OS=Cajanus cajan GN=KK1_029832 PE=4 SV=1	[more]
A0A0R0FWS3_SOYBN	6.1e-28	74.47	Uncharacterized protein OS=Glycine max GN=GLYMA_15G063700 PE=4 SV=1	[more]

BLAST of CmoCh17G008780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16170.1	9.9e-22	60.87	unknown protein	[more]
AT1G79660.1	1.0e-18	56.52	unknown protein	[more]

BLAST of CmoCh17G008780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728887\|ref\|XP_011659492.1\|	1.3e-34	87.10	PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus]	[more]
gi\|700189975\|gb\|KGN45208.1\|	1.3e-34	87.10	hypothetical protein Csa_7G431400 [Cucumis sativus]	[more]
gi\|659122533\|ref\|XP_008461194.1\|	1.1e-33	82.98	PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo]	[more]
gi\|920712636\|gb\|KOM53885.1\|	1.0e-28	76.60	hypothetical protein LR48_Vigan09g254400 [Vigna angularis]	[more]
gi\|593695585\|ref\|XP_007148291.1\|	1.3e-28	76.60	hypothetical protein PHAVU_006G195900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G008780.1	CmoCh17G008780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	FAMILY NOT NAMED	coord: 4..95 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G008780	Cucsa.106010	Cucumber (Gy14) v1	cgycmoB0236
CmoCh17G008780	CmaCh14G010430	Cucurbita maxima (Rimu)	cmacmoB252
CmoCh17G008780	CmaCh17G009070	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G008780	CmaCh01G001900	Cucurbita maxima (Rimu)	cmacmoB466
CmoCh17G008780	CmaCh08G005830	Cucurbita maxima (Rimu)	cmacmoB896
CmoCh17G008780	Cla017223	Watermelon (97103) v1	cmowmB331
CmoCh17G008780	Cla015313	Watermelon (97103) v1	cmowmB322
CmoCh17G008780	Csa3G710730	Cucumber (Chinese Long) v2	cmocuB351
CmoCh17G008780	Csa7G431400	Cucumber (Chinese Long) v2	cmocuB378
CmoCh17G008780	MELO3C024884	Melon (DHL92) v3.5.1	cmomeB326
CmoCh17G008780	ClCG09G003430	Watermelon (Charleston Gray)	cmowcgB299
CmoCh17G008780	ClCG10G012830	Watermelon (Charleston Gray)	cmowcgB308
CmoCh17G008780	CSPI07G20010	Wild cucumber (PI 183967)	cmocpiB381
CmoCh17G008780	CSPI03G30220	Wild cucumber (PI 183967)	cmocpiB356
CmoCh17G008780	Lsi02G026540	Bottle gourd (USVL1VR-Ls)	cmolsiB337
CmoCh17G008780	Lsi03G012500	Bottle gourd (USVL1VR-Ls)	cmolsiB340
CmoCh17G008780	Cp4.1LG12g07290	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G008780	Cp4.1LG17g08630	Cucurbita pepo (Zucchini)	cmocpeB339
CmoCh17G008780	MELO3C024884.2	Melon (DHL92) v3.6.1	cmomedB374
CmoCh17G008780	MELO3C029246.2	Melon (DHL92) v3.6.1	cmomedB365
CmoCh17G008780	CsaV3_7G031790	Cucumber (Chinese Long) v3	cmocucB0455
CmoCh17G008780	Cla97C09G165660	Watermelon (97103) v2	cmowmbB370
CmoCh17G008780	Cla97C10G195700	Watermelon (97103) v2	cmowmbB344
CmoCh17G008780	Bhi11G001240	Wax gourd	cmowgoB0452
CmoCh17G008780	CsGy7G018280	Cucumber (Gy14) v2	cgybcmoB909
CmoCh17G008780	Carg11256	Silver-seed gourd	carcmoB1104
CmoCh17G008780	Carg13495	Silver-seed gourd	carcmoB0608

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G008780	CmoCh14G010610	Cucurbita moschata (Rifu)	cmocmoB199
CmoCh17G008780	CmoCh01G001980	Cucurbita moschata (Rifu)	cmocmoB299
CmoCh17G008780	CmoCh08G005740	Cucurbita moschata (Rifu)	cmocmoB319

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G008780	Melon (DHL92) v3.5.1	cmomeB318
CmoCh17G008780	Cucurbita pepo (Zucchini)	cmocpeB361
CmoCh17G008780	Cucumber (Gy14) v2	cgybcmoB320
CmoCh17G008780	Silver-seed gourd	carcmoB0480
CmoCh17G008780	Wax gourd	cmowgoB0486