CmaCh14G010430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G010430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ephrin-A3
Location	Cma_Chr14 : 5493779 .. 5494287 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTTTCTTCTTGCTCGGGTTTGACTGGAGCTCAAAGGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCGAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATATAGCATATAAGATGTAGCAGAATGTCATGAGCATTGCTTCCTTGCATTAATTTGATATTTTTGTTTGTTTCTTCTTTTTGATGATGG

mRNA sequence

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTTTCTTCTTGCTCGGGTTTGACTGGAGCTCAAAGGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCGAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATATAGCATATAAGATGTAGCAGAATGTCATGAGCATTGCTTCCTTGCATTAATTTGATATTTTTGTTTGTTTCTTCTTTTTGATGATGG

Coding sequence (CDS)

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTTTCTTCTTGCTCGGGTTTGACTGGAGCTCAAAGGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

Protein sequence

MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL

Homology

[Close]

BLAST of CmaCh14G010430 vs. TrEMBL
Match: A0A0A0L9L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-38
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTG QRELCRLEHA+ASL KGK KFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmaCh14G010430 vs. TrEMBL
Match: M5WZY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
           MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 61  GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
           GA+  +CSGL+G Q+ LCRLEHA+ S+  GK K L
Sbjct: 129 GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

[Close]

BLAST of CmaCh14G010430 vs. TrEMBL
Match: B9GLR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+S+++SPHRR P FRK FP +ELGSWSTL  RHRFLLTA ALL  LCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLRRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
          G A  SCSGLTG ++ LCRLE A+ S+G GK KF
Sbjct: 61 G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

[Close]

BLAST of CmaCh14G010430 vs. TrEMBL
Match: B9NEV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+S+++SPHRR P FRK FP +ELGSWSTL  RHRFLLTA ALL  LCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
          G A  SCSGLTG ++ LCRLE A+ S+G GK KF
Sbjct: 61 G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

[Close]

BLAST of CmaCh14G010430 vs. TrEMBL
Match: B9RGQ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
           MVL++ILSSPHRR P FRKQFP +ELGSWSTL  RHRFLLTAL LL  LCTIYLYFA+TL
Sbjct: 28  MVLDNILSSPHRRSPSFRKQFPRDELGSWSTLVQRHRFLLTALVLLAFLCTIYLYFAVTL 87

Query: 61  GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
           G A  SCSGLTG Q+ LC LE A++S+ KGK KF
Sbjct: 88  G-ATGSCSGLTGKQKALCNLELAKSSV-KGKMKF 119

[Close]

BLAST of CmaCh14G010430 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-23
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+ ++SSP RR    +KQ+  +ELGSWSTL  RH++LLTALALL  LCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
          GA  SSC GLTG  + +C+L+  +A L KGK KF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

[Close]

BLAST of CmaCh14G010430 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-22
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+ I+SSP RR    +KQ+  ++LGS ST+  RHRFLLTA+ LL  LCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
          GA    CSG+TG  + +C++EH +AS   GK KF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

[Close]

BLAST of CmaCh14G010430 vs. NCBI nr
Match: gi|778682913|ref|XP_011651806.1| (PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.2e-38
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTG QRELCRLEHA+ASL KGK KFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmaCh14G010430 vs. NCBI nr
Match: gi|659125983|ref|XP_008462952.1| (PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTG QRELCRLEHA+ASL  GK KFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

[Close]

BLAST of CmaCh14G010430 vs. NCBI nr
Match: gi|743874185|ref|XP_011034600.1| (PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica])

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+S+++SPHRR P FRKQFP +ELGSWSTL  RHRFLLTALALL  LCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTALALLAFLCTIYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKF 95
          G A  SCSGLTG ++ LCRLE A+ S+G GK KF
Sbjct: 61 G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

[Close]

BLAST of CmaCh14G010430 vs. NCBI nr
Match: gi|645245392|ref|XP_008228859.1| (PREDICTED: uncharacterized protein LOC103328240 [Prunus mume])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 1  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
          GA+  +CSGL+G Q+ LCRLEHA+ S+  GK K L
Sbjct: 61 GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 94

[Close]

BLAST of CmaCh14G010430 vs. NCBI nr
Match: gi|595971743|ref|XP_007217592.1| (hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60
           MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 61  GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 96
           GA+  +CSGL+G Q+ LCRLEHA+ S+  GK K L
Sbjct: 129 GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

The following BLAST results are available for this feature:

BLAST of CmaCh14G010430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9L6_CUCSA	2.9e-38	87.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1	[more]
M5WZY1_PRUPE	2.1e-28	71.58	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 S...	[more]
B9GLR3_POPTR	6.1e-28	70.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1	[more]
B9NEV9_POPTR	6.1e-28	70.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1	[more]
B9RGQ8_RICCO	1.0e-27	73.40	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1	[more]

BLAST of CmaCh14G010430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16170.1	1.8e-23	59.57	unknown protein	[more]
AT1G79660.1	4.4e-22	55.32	unknown protein	[more]

BLAST of CmaCh14G010430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682913\|ref\|XP_011651806.1\|	4.2e-38	87.37	PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus]	[more]
gi\|659125983\|ref\|XP_008462952.1\|	1.6e-37	86.32	PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo]	[more]
gi\|743874185\|ref\|XP_011034600.1\|	6.0e-29	72.34	PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica]	[more]
gi\|645245392\|ref\|XP_008228859.1\|	3.0e-28	71.58	PREDICTED: uncharacterized protein LOC103328240 [Prunus mume]	[more]
gi\|595971743\|ref\|XP_007217592.1\|	3.0e-28	71.58	hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010430.1	CmaCh14G010430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	FAMILY NOT NAMED	coord: 2..95 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G010430	Cucsa.177380	Cucumber (Gy14) v1	cgycmaB0497
CmaCh14G010430	Cla017223	Watermelon (97103) v1	cmawmB227
CmaCh14G010430	Cla015313	Watermelon (97103) v1	cmawmB226
CmaCh14G010430	Csa3G710730	Cucumber (Chinese Long) v2	cmacuB241
CmaCh14G010430	ClCG09G003430	Watermelon (Charleston Gray)	cmawcgB220
CmaCh14G010430	ClCG10G012830	Watermelon (Charleston Gray)	cmawcgB221
CmaCh14G010430	CSPI03G30220	Wild cucumber (PI 183967)	cmacpiB243
CmaCh14G010430	CmoCh08G005740	Cucurbita moschata (Rifu)	cmacmoB276
CmaCh14G010430	CmoCh17G008780	Cucurbita moschata (Rifu)	cmacmoB252
CmaCh14G010430	CmoCh14G010610	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G010430	Lsi03G012500	Bottle gourd (USVL1VR-Ls)	cmalsiB240
CmaCh14G010430	Cp4.1LG12g07290	Cucurbita pepo (Zucchini)	cmacpeB260
CmaCh14G010430	Cp4.1LG17g08630	Cucurbita pepo (Zucchini)	cmacpeB269
CmaCh14G010430	Cp4.1LG03g08950	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G010430	CsaV3_3G032670	Cucumber (Chinese Long) v3	cmacucB0280
CmaCh14G010430	Cla97C10G195700	Watermelon (97103) v2	cmawmbB248
CmaCh14G010430	Bhi11G001240	Wax gourd	cmawgoB0289
CmaCh14G010430	CsGy7G018280	Cucumber (Gy14) v2	cgybcmaB911
CmaCh14G010430	Carg11256	Silver-seed gourd	carcmaB1132
CmaCh14G010430	Carg13495	Silver-seed gourd	carcmaB0624

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G010430	CmaCh17G009070	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh14G010430	CmaCh08G005830	Cucurbita maxima (Rimu)	cmacmaB293

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G010430	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh14G010430	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G010430	Melon (DHL92) v3.5.1	cmameB226
CmaCh14G010430	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G010430	Cucumber (Gy14) v2	cgybcmaB307
CmaCh14G010430	Melon (DHL92) v3.6.1	cmamedB257
CmaCh14G010430	Silver-seed gourd	carcmaB0275
CmaCh14G010430	Silver-seed gourd	carcmaB0496