Cp4.1LG03g08950 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g08950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEphrin-A3
LocationCp4.1LG03 : 5755110 .. 5756583 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTCTTTTTGTTAATTGGAGATGATTATTAGGATAATGTGCACAACCATTGGATCCAGTTCTATTTTCCATTTTGTTCTTAGCGACGTTTTGGTGTATGATGATGATTTTCTCTCTGTTGCTATTTGGCATGCGTTTTAACGAGTTGTTGAGGATGTGGAGATGTACTCTGTGTTTGATTTTCTTTTTAGTTGAAACTATTGAGCGATGTTTATGGATTTGAAGTTGTGTTGAGCGGATGCCTGATAAGATCTCATGTGGCTGGTTTTCAATTAGCTTTATTTGAGGTTGCATAAATTATATGCAGTCTCGTAGGATCTCTATGGTGGAGCGAGTACAAATTTTTCGAGTTTAGGTTCATTTACATCGGTTACTTGGTGCTGTTTGCTCATGGATCAGTGATCTTGGATTATTTTGCTGTTCTAACTTCAATGTTGACTTGAAAAATAAAACAGTTCGAATTGCTTTTTATTGTATGAGTTAACTTTTGAATTTCTAGTTAAAAGTCATGCGATCTAATAAAATCACAAATGTTTTGTGTATCTACAAGTCTTAATACATGATTCAAATTTTGTTGCATTGTATCTTCTCTAGAATTCAACAAATCTGCAAGTTCAAATCTCCAAGAACTAATGTTTTGGCCAAGCTTTCAAGGATTTTATTGTTTCATGCATTTCAAGATGCTTTGTTGTGCTGCAGATTTAATTGTCATCTTACCACTTCAAATTCTTATATATTTAAACGGAATCTGAATTTATTGAAATGCTTGTTGAAGAGAAGGGCTCGTGTTGATATCTATTTAAACTTGACCATCTTTTGCTCTTGTAGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATAGCATATAAGATGTAGCAGAATGTCATGAACATTGCTTCCTTGCATTAATTTGATATTTTTGTTCGTTTCTTCTTTTTGATGATGGGTTTGTAATTAAAAGTTCAATCAGAATGTTCATATTATTGTCATTACAATAATAGATGGGAACTACTGCTCATACCC

mRNA sequence

ATGCGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATAGCATATAAGATGTAGCAGAATGTCATGAACATTGCTTCCTTGCATTAATTTGATATTTTTGTTCGTTTCTTCTTTTTGATGATGGGTTTGTAATTAAAAGTTCAATCAGAATGTTCATATTATTGTCATTACAATAATAGATGGGAACTACTGCTCATACCC

Coding sequence (CDS)

ATGCGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

Protein sequence

MRRFCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
BLAST of Cp4.1LG03g08950 vs. TrEMBL
Match: A0A0A0L9L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-37
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA  SSCSGLTG Q+ELCRLEHA+ASL KGK KFL
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of Cp4.1LG03g08950 vs. TrEMBL
Match: M5WZY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA+  +CSGL+G QK LCRLEHA+ S+  GK K L
Sbjct: 129 GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

BLAST of Cp4.1LG03g08950 vs. TrEMBL
Match: B9RGQ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 1

Query: 19  LLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFA 78
           L +MVL++ILSSPHRR P FRKQFP +ELGSWSTL  RHRFLLTAL LL  LCTIYLYFA
Sbjct: 25  LKDMVLDNILSSPHRRSPSFRKQFPRDELGSWSTLVQRHRFLLTALVLLAFLCTIYLYFA 84

Query: 79  ITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           +TLG A  SCSGLTG QK LC LE A++S+ KGK KF
Sbjct: 85  VTLG-ATGSCSGLTGKQKALCNLELAKSSV-KGKMKF 119

BLAST of Cp4.1LG03g08950 vs. TrEMBL
Match: B9GLR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-28
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+S+++SPHRR P FRK FP +ELGSWSTL  RHRFLLTA ALL  LCTIYLYFA+TL
Sbjct: 1   MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLRRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           G A  SCSGLTG +K LCRLE A+ S+G GK KF
Sbjct: 61  G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cp4.1LG03g08950 vs. TrEMBL
Match: B9NEV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-28
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+S+++SPHRR P FRK FP +ELGSWSTL  RHRFLLTA ALL  LCTIYLYFA+TL
Sbjct: 1   MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           G A  SCSGLTG +K LCRLE A+ S+G GK KF
Sbjct: 61  G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cp4.1LG03g08950 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+ ++SSP RR    +KQ+  +ELGSWSTL  RH++LLTALALL  LCT+YLYFA+TL
Sbjct: 1   MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           GA  SSC GLTG  K +C+L+  +A L KGK KF
Sbjct: 61  GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

BLAST of Cp4.1LG03g08950 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-22
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+ I+SSP RR    +KQ+  ++LGS ST+  RHRFLLTA+ LL  LCTIY+YFA+TL
Sbjct: 1   MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           GA    CSG+TG  K +C++EH +AS   GK KF
Sbjct: 61  GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: gi|778682913|ref|XP_011651806.1| (PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA  SSCSGLTG Q+ELCRLEHA+ASL KGK KFL
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: gi|659125983|ref|XP_008462952.1| (PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-37
Identity = 81/95 (85.26%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA  SSCSGLTG Q+ELCRLEHA+ASL  GK KFL
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: gi|743874185|ref|XP_011034600.1| (PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica])

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-29
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+S+++SPHRR P FRKQFP +ELGSWSTL  RHRFLLTALALL  LCTIYLYFA+TL
Sbjct: 1   MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTALALLAFLCTIYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           G A  SCSGLTG +K LCRLE A+ S+G GK KF
Sbjct: 61  G-ATESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: gi|645245392|ref|XP_008228859.1| (PREDICTED: uncharacterized protein LOC103328240 [Prunus mume])

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-28
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 1   MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA+  +CSGL+G QK LCRLEHA+ S+  GK K L
Sbjct: 61  GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 94

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: gi|595971743|ref|XP_007217592.1| (hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica])

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-28
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SILSSP R+   FRKQF  NELGSWSTLF RHRFLLTALALLT LCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 117
           GA+  +CSGL+G QK LCRLEHA+ S+  GK K L
Sbjct: 129 GAS-PTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9L6_CUCSA1.0e-3786.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1[more]
M5WZY1_PRUPE1.5e-2872.63Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 S... [more]
B9RGQ8_RICCO3.3e-2873.20Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1[more]
B9GLR3_POPTR4.3e-2871.28Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1[more]
B9NEV9_POPTR4.3e-2871.28Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G16170.11.3e-2360.64 unknown protein[more]
AT1G79660.13.2e-2256.38 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778682913|ref|XP_011651806.1|1.5e-3786.32PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus][more]
gi|659125983|ref|XP_008462952.1|5.6e-3785.26PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo][more]
gi|743874185|ref|XP_011034600.1|4.3e-2973.40PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica][more]
gi|645245392|ref|XP_008228859.1|2.1e-2872.63PREDICTED: uncharacterized protein LOC103328240 [Prunus mume][more]
gi|595971743|ref|XP_007217592.1|2.1e-2872.63hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08950.1Cp4.1LG03g08950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34774FAMILY NOT NAMEDcoord: 23..116
score: 9.2