Cucsa.177380 (gene) Cucumber (Gy14) v1

NameCucsa.177380
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEphrin-A3
Locationscaffold01225 : 1402281 .. 1403913 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATTATTATTACTTATTAGTGCTTCCCTCTCCCATTCTCCAAACAAAGACCAAAAACAGGCCAAACACAATTTCCATTCTCCATTACCTTTTCCATCAACTCTGTAAGATTCACTCTCTTTACCTCTAATTTTCTTCTTCTCTTTCAGATCTGCATTTCTTTTtCCCTCTTTTCTTTTTtCCTTTCCTTCCCTTTCCTCTTGGATCTTGATTTTCTTCCTACTTCCACCTCATTCTTGCGATATTTAATCTTCAAATCGATTAGATCGGACTTTCTTTTtCTTTTTCCTTCTCTTTCTTGCCTCCTTTTGACGCCTGTTGTTTATTTCTCTCTTCCTATTTGCCTTGCGTTTTTTCAATTTGTTTAGAATGTTGTAGATTTATTCCGTGTTTAATTTTCTTATTGAATGTTGGCTATGGCGCAATGTTTATGGATTTGGAGATGGGTTGAGCTGATGCCTGATAATTTCCTTTTCGATTGTTTGTTTTGAGGTTCCATAAATTATATTTTAGGTGTCGTTGGATCTCTATGGTTTAATGGTGCATTTCTGAGTTTAGGTTAATTTATATTGATTACTTCCTGCTTTTTGCTAATGGATTACCGATCTTTGATGATTTTGCGGTTATAGCCATCTTCAATGTTGACTTGAAAAATATAGGGCAAGTTTTTtAATATCAAGTTAAAAGTTCTTTATTGCCTCTGACTATTGCGACATATATTCATGCCATCTATAAAATCACGAGGATATCTTCTCTGTCTTGCCTTCCGCTTTATATATCTAGCAGTTTTAATATGTGATTCAAGTTTTGCATTTTATCTTTCCTTAAATTCGACAAATCTACAAGTTTTAATCCATTTCAAAATGCTTTGCTTACCTGCTGCAGATTACATCGTCATATTACCACTTTAAATTCTTATATGTTTGAATGAAATCTGAATTTATTGAAACACACTTGCTGAAGAAAAGGGGGCTGCTTGTTGTTATCTGTCTAATCTTGGGCCCCTCTTGTTTTTGTAGAAGATTTTGTGTTTGGTGCTAAATTTCAGAGGACATAGGAAGATTAGTGCTCTTGAATATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCGCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGTGCTACGGCGTCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGTCGTCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAACTAAAATTTCTATGATACACACGTAGGGACTTCAAGGTACAAAACCTTCTCATGTATTGGTCCTTCTCTTTGGTGGGCTTTGTATTTATAAAAAaGAAAAaTCGATGATTATTATAGATCAAAAGTTCATTCATCCTTTTTGATTCACACATATAACTTATAAGATATAGCAGAATGTTATTAACATTGCTTTCTTGCATTAATTTGTTGTTGTTTTTtCTTTTCCTTTTTTTTTTtGTGATAATGAATTTATATTAAACCTTCAATCATAATGTTCATATt

mRNA sequence

GTTATTATTATTACTTATTAGTGCTTCCCTCTCCCATTCTCCAAACAAAGACCAAAAACAGGCCAAACACAATTTCCATTCTCCATTACCTTTTCCATCAACTCTATTTTGTGTTTGGTGCTAAATTTCAGAGGACATAGGAAGATTAGTGCTCTTGAATATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCGCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGTGCTACGGCGTCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGTCGTCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAACTAAAATTTCTATGATACACACGTAGGGACTTCAAGGTACAAAACCTTCTCATGTATTGGTCCTTCTCTTTGGTGGGCTTTGTATTTATAAAAAAGAAAAATCGATGATTATTATAGATCAAAAGTTCATTCATCCTTTTTGATTCACACATATAACTTATAAGATATAGCAGAATGTTATTAACATTGCTTTCTTGCATTAATTTGTTGTTGTTTTTTCTTTTCCTTTTTTTTTTTGTGATAATGAATTTATATTAAACCTTCAATCATAATGTTCATATT

Coding sequence (CDS)

ATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCGCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGTGCTACGGCGTCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGTCGTCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAACTAAAATTTCTATGA

Protein sequence

MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITLGATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL*
BLAST of Cucsa.177380 vs. TrEMBL
Match: A0A0A0L9L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.5e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of Cucsa.177380 vs. TrEMBL
Match: M5WZY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-34
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
           MVLDSIL+SP R+S SFRKQF  NELGSWSTLF+RHRFLLTALALLTFLCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
           GA + +CSGL+GTQ+ LCRLEHAK S+A GKLK L
Sbjct: 129 GA-SPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

BLAST of Cucsa.177380 vs. TrEMBL
Match: B9GLR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDS++ SPHRRSPSFRK FP +ELGSWSTL +RHRFLLTA ALL FLCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLRRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKF 95
          GAT  SCSGLTGT++ LCRLE AK S+  GKLKF
Sbjct: 61 GAT-ESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cucsa.177380 vs. TrEMBL
Match: B9NEV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-33
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDS++ SPHRRSPSFRK FP +ELGSWSTL +RHRFLLTA ALL FLCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKF 95
          GAT  SCSGLTGT++ LCRLE AK S+  GKLKF
Sbjct: 61 GAT-ESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cucsa.177380 vs. TrEMBL
Match: A0A061GK21_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_029288 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-33
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD I++SPHRRS S RKQF  +ELGSWSTL  RHRFLLTAL LL FLCTIYLYFA+TL
Sbjct: 1  MVLDGIVSSPHRRSGSIRKQFQKDELGSWSTLVHRHRFLLTALGLLAFLCTIYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
          GATA +CSGLTGTQ+  C+L+HA+++L+ GKLKFL
Sbjct: 61 GATADTCSGLTGTQKATCKLQHARSTLSHGKLKFL 95

BLAST of Cucsa.177380 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-26
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD +++SP RR    +KQ+  +ELGSWSTL +RH++LLTALALL FLCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKF 95
          GA  SSC GLTG  + +C+L+  +A L+KGKLKF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

BLAST of Cucsa.177380 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-25
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD I++SP RR  + +KQ+  ++LGS ST+ +RHRFLLTA+ LL FLCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKF 95
          GA    CSG+TG  + +C++EH +AS + GKLKF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

BLAST of Cucsa.177380 vs. NCBI nr
Match: gi|778682913|ref|XP_011651806.1| (PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.3e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of Cucsa.177380 vs. NCBI nr
Match: gi|659125983|ref|XP_008462952.1| (PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-45
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

BLAST of Cucsa.177380 vs. NCBI nr
Match: gi|743874185|ref|XP_011034600.1| (PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDS++ SPHRRSPSFRKQFP +ELGSWSTL +RHRFLLTALALL FLCTIYLYFA+TL
Sbjct: 1  MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTALALLAFLCTIYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKF 95
          GAT  SCSGLTGT++ LCRLE AK S+  GKLKF
Sbjct: 61 GAT-ESCSGLTGTKKTLCRLELAKDSVGNGKLKF 93

BLAST of Cucsa.177380 vs. NCBI nr
Match: gi|645245392|ref|XP_008228859.1| (PREDICTED: uncharacterized protein LOC103328240 [Prunus mume])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSIL+SP R+S SFRKQF  NELGSWSTLF+RHRFLLTALALLTFLCT+YLYFA+TL
Sbjct: 1  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
          GA + +CSGL+GTQ+ LCRLEHAK S+A GKLK L
Sbjct: 61 GA-SPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 94

BLAST of Cucsa.177380 vs. NCBI nr
Match: gi|595971743|ref|XP_007217592.1| (hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
           MVLDSIL+SP R+S SFRKQF  NELGSWSTLF+RHRFLLTALALLTFLCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 96
           GA + +CSGL+GTQ+ LCRLEHAK S+A GKLK L
Sbjct: 129 GA-SPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L9L6_CUCSA6.5e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1[more]
M5WZY1_PRUPE7.5e-3478.95Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 S... [more]
B9GLR3_POPTR3.7e-3377.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07530g PE=4 SV=1[more]
B9NEV9_POPTR4.8e-3377.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1[more]
A0A061GK21_THECC4.8e-3373.68Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_029288 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G16170.11.0e-2661.70 unknown protein[more]
AT1G79660.11.9e-2557.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778682913|ref|XP_011651806.1|9.3e-46100.00PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus][more]
gi|659125983|ref|XP_008462952.1|3.5e-4598.95PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo][more]
gi|743874185|ref|XP_011034600.1|4.8e-3479.79PREDICTED: uncharacterized protein LOC105132679 [Populus euphratica][more]
gi|645245392|ref|XP_008228859.1|1.1e-3378.95PREDICTED: uncharacterized protein LOC103328240 [Prunus mume][more]
gi|595971743|ref|XP_007217592.1|1.1e-3378.95hypothetical protein PRUPE_ppa018500mg, partial [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.177380.1Cucsa.177380.1mRNA
Cucsa.177380.2Cucsa.177380.2mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34774FAMILY NOT NAMEDcoord: 2..95
score: 5.1
NoneNo IPR availablePANTHERPTHR34774:SF1SUBFAMILY NOT NAMEDcoord: 2..95
score: 5.1