MELO3C024884.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C024884.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionEphrin-A3
Locationchr04 : 24994338 .. 24996000 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCCGTGGTTTTTCATATCCTTTCTAAAACCGTGACTCGCGGAATTGAAAATTCCCCCATTATTATTAGTATTAGTGGTGCGCTCTTCCATTTTCGAAACAAGAGCAAAAACAGGGCAAACACAATTCCCAATCTCCATTACCCTTTCCATCACCTGTAAGATTTACTCTCTCTTTCGTTCATTTCTCTTTGCATGTAATTTTCTTCTTCTCTTTCAGATCTGCACTTCTTTTTCCCTCTCTTCTTTCTTTTTTTCCTGCCGTTTTTCCTCTTCTCTTCTCATGGATGTTGATTTTCTTATTACTTCTACCTCATTGTTGCAATAATCAATGTTCATATCCATTAGATCGGACTTTCTTTTTGTTTTTCCTTCTGTTTTTAGCCTCGTTTTGATGCCTATTGTTTATTTCTCCTGTTGCTATTTGGCTTGCGTTTTATCAATTTGTTTTTGATGTTGTGGATTTGTTCTGTGTTTAATTTTCTTATTGAATGTTGGCTATAGAGCGATGTTTATGGATTTGGAGTTACGTTGAGCTGATGCCTGATAATTCCCTTTTTGATTGTTTGTTTTGAGGTTACATGAATTATATTAGGTATAGTTGGATCTCTATGGTTTAATGGTGCCATTCTGAGTTTAGGTTCATTTATATTGATTAGTTCCTGCTTTTTGCTCATGGATTACCGATCTTTGATGATTTTGCTGTTATAACTTCAATGTTGACTTGAAAAATATAAGGCGAACTTTCGAATATCAAATTAAAAGTTCTTTATTGCCTCTGACTATTGCGACATATATTCATGCCATCTATAAAATCACGAGGATTTATTCTCTGTCGAGCCTCCCGCTTCATATATCTAGTAGTTTTAATATGTGATTCAAGTTTTGTATTTTATCTTTCCTTGAATTCAACAAATCTACAAGTTTTATTCCTCTAGAACTTATTCTATGGTGTAGTTTTTTATGATCTTATTGTTTCATCCATTTCAAAATGCTTTGCTTACCTGCAGCAGATTACTTTGTAATAATACCACTTTAGATTCTTATATGTTTGAATGAAATTTGAATTTACTGAAACACACTTGCTGAAGAAAAGGGGCCTGCTTGTTGTTATCTGTCTAATCTTGGGTCCCTCTTGTTTTTGTAGAAGATTTTGTGTTTGGTGCTAAATTTCAGAGCTCATAGGAAGATTAGTGCTCTTGAATATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCTCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGGGCTACGGCATCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGCCGTCTGGAGCATGCTAAAGCTTCTTTGGCTAACGGCAAATTAAAATTTCTATGATACACACGTAGGGACTTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATTTGTATTTAAAATAAAAAAAAAAAATCGATGATTACTATAGATAAAAAGTTCATTCATCCATTTTGATTCATACATATAACTTATAAGATGTAGCAGAATGTTATT

mRNA sequence

AATCCCGTGGTTTTTCATATCCTTTCTAAAACCGTGACTCGCGGAATTGAAAATTCCCCCATTATTATTAGTATTAGTGGTGCGCTCTTCCATTTTCGAAACAAGAGCAAAAACAGGGCAAACACAATTCCCAATCTCCATTACCCTTTCCATCACCTAAGATTTTGTGTTTGGTGCTAAATTTCAGAGCTCATAGGAAGATTAGTGCTCTTGAATATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCTCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGGGCTACGGCATCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGCCGTCTGGAGCATGCTAAAGCTTCTTTGGCTAACGGCAAATTAAAATTTCTATGATACACACGTAGGGACTTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATTTGTATTTAAAATAAAAAAAAAAAATCGATGATTACTATAGATAAAAAGTTCATTCATCCATTTTGATTCATACATATAACTTATAAGATGTAGCAGAATGTTATT

Coding sequence (CDS)

ATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGATCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAATTGGGCAGTTGGTCTACTCTCTTCAAGCGGCATCGCTTCCTCTTAACCGCTCTAGCACTCTTAACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTGGGGGCTACGGCATCGTCTTGTTCGGGTTTGACTGGAACTCAAAGAGAGTTGTGCCGTCTGGAGCATGCTAAAGCTTCTTTGGCTAACGGCAAATTAAAATTTCTATGA

Protein sequence

MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITLGATASSCSGLTGTQRELCRLEHAKASLANGKLKFL
BLAST of MELO3C024884.2 vs. NCBI nr
Match: XP_016902957.1 (PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 4.4e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

BLAST of MELO3C024884.2 vs. NCBI nr
Match: XP_011651806.1 (PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus] >KGN58645.1 hypothetical protein Csa_3G710730 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of MELO3C024884.2 vs. NCBI nr
Match: XP_022153454.1 (uncharacterized protein LOC111020959 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 4.6e-41
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWS LF RHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTG Q+ELCR+EHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

BLAST of MELO3C024884.2 vs. NCBI nr
Match: XP_022948745.1 (uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 uncharacterized protein LOC111452323 [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 9.5e-39
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTG Q+ELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

BLAST of MELO3C024884.2 vs. NCBI nr
Match: XP_022998509.1 (uncharacterized protein LOC111493123 [Cucurbita maxima] >XP_022998510.1 uncharacterized protein LOC111493123 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 8.1e-38
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD+ILASP RR+P+FRK FPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDNILASPRRRTPTFRKHFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTG Q+ELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

BLAST of MELO3C024884.2 vs. TAIR10
Match: AT1G16170.1 (unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD +++SP RR    +KQ+  +ELGSWSTL +RH++LLTALALL FLCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKF 95
          GA  SSC GLTG  + +C+L+  +A L+ GKLKF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

BLAST of MELO3C024884.2 vs. TAIR10
Match: AT1G79660.1 (unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD I++SP RR  + +KQ+  ++LGS ST+ +RHRFLLTA+ LL FLCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKF 95
          GA    CSG+TG  + +C++EH +AS +NGKLKF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

BLAST of MELO3C024884.2 vs. TrEMBL
Match: tr|A0A1S4E410|A0A1S4E410_CUCME (uncharacterized protein LOC103501213 OS=Cucumis melo OX=3656 GN=LOC103501213 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

BLAST of MELO3C024884.2 vs. TrEMBL
Match: tr|A0A0A0L9L6|A0A0A0L9L6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GATASSCSGLTGTQRELCRLEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of MELO3C024884.2 vs. TrEMBL
Match: tr|A0A2I4DDX9|A0A2I4DDX9_9ROSI (uncharacterized protein LOC108979198 OS=Juglans regia OX=51240 GN=LOC108979198 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.8e-33
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFP ++  SW+TL +RHRFLLTALALL FLCT+YLYFA+TL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPRDDPLSWATLLQRHRFLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GAT  SCSGLTG Q+ LCRLEHAKAS+A GKLK L
Sbjct: 61 GAT-GSCSGLTGAQKALCRLEHAKASVAKGKLKIL 94

BLAST of MELO3C024884.2 vs. TrEMBL
Match: tr|A0A251Q1H5|A0A251Q1H5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G105500 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSIL+SP R+S SFRKQF  NELGSWSTLF+RHRFLLTALALLTFLCT+YLYFA+TL
Sbjct: 1  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
          GA + +CSGL+GTQ+ LCRLEHAK S+A+GKLK L
Sbjct: 61 GA-SPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 94

BLAST of MELO3C024884.2 vs. TrEMBL
Match: tr|M5WZY1|M5WZY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa018500mg PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
           MVLDSIL+SP R+S SFRKQF  NELGSWSTLF+RHRFLLTALALLTFLCT+YLYFA+TL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 61  GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 96
           GA + +CSGL+GTQ+ LCRLEHAK S+A+GKLK L
Sbjct: 129 GA-SPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016902957.14.4e-44100.00PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo][more]
XP_011651806.12.2e-4398.95PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus] >KGN58645.1 hy... [more]
XP_022153454.14.6e-4193.68uncharacterized protein LOC111020959 [Momordica charantia][more]
XP_022948745.19.5e-3990.53uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 unchar... [more]
XP_022998509.18.1e-3888.42uncharacterized protein LOC111493123 [Cucurbita maxima] >XP_022998510.1 uncharac... [more]
Match NameE-valueIdentityDescription
AT1G16170.11.2e-2460.64unknown protein[more]
AT1G79660.11.2e-2458.51unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E410|A0A1S4E410_CUCME2.9e-44100.00uncharacterized protein LOC103501213 OS=Cucumis melo OX=3656 GN=LOC103501213 PE=... [more]
tr|A0A0A0L9L6|A0A0A0L9L6_CUCSA1.5e-4398.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1[more]
tr|A0A2I4DDX9|A0A2I4DDX9_9ROSI8.8e-3380.00uncharacterized protein LOC108979198 OS=Juglans regia OX=51240 GN=LOC108979198 P... [more]
tr|A0A251Q1H5|A0A251Q1H5_PRUPE2.6e-3278.95Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G105500 PE=4 SV=1[more]
tr|M5WZY1|M5WZY1_PRUPE2.6e-3278.95Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa018500m... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024884.2.1MELO3C024884.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34774FAMILY NOT NAMEDcoord: 1..95
NoneNo IPR availablePANTHERPTHR34774:SF3SUBFAMILY NOT NAMEDcoord: 1..95