ClCG09G003430 (gene) Watermelon (Charleston Gray)

NameClCG09G003430
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionAt1g79660/F20B17_9
LocationCG_Chr09 : 2953705 .. 2955147 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTAGAAAGTAAGTTACAACAAGAAGAGTTCTATGAGGGTGTTAATTTCATGTTATAGTGACCTTCACTCATATGCCTTCTTGTTATTTGATTGGAAAAATTTGGAGACACCTTTTGAACCTGCATGGCTTGCCTGCTTCTTGGTAGACTTCTGAGAATATGGTTTTTTAGATTTATGTCATTCTTATGATATTGGCTCAAACGAAAATACTGTCCTCCTCTAAGCAATCGCTTGTTGAGCTCTTTTTCTTTCAATCACTGTATCAAGTTTACATCTTTGAATGTTCTACAATATTATTTTCCTCTAAAATATATAAATACCATCCTGAAAATATAATAAGTATCTTTGAATTTTTTTTCCAAGCGATCTGCTTAATGGGTTGAGAAGTGCATTTTTGGATTCTTTATTAGTTGTCAGCAATAAGATAGCTAGTTTTGGGGCTTCTGTTGTAAAAAAAACAATTTGGCTTGACTTCTCTATCGCTCATGACTTGCATTGTAGTCCTATTGACCACGACTGTTTCTGGAAGGGTTGGTTGCATCATTCTTACATCACTCGGTGATGGAAGAGTAGGAGAACTACACTACGGTTGGTTAACTTGGTCGCAATTGTTTTGCCTCTGTTTGTACTAGATCTAAGAGATGGACAGTTGTACTAGTGTTAGTTCTACTTTCCGAAAAGAAAAAAAAGTGCGAGTGTTTAGTCTTTAATTGTATAATATTTGGAATGTCTCATTCTGGGCGAAGTCACCACCAACAGTATTAGAAACTGAGATCAATTGTTTTTTCTCAAAATTGCTGCATATCCTGCTATATGAACTTCAATCTTATTGTGGGAGAAAAAAAATCAAGATTCATGTAGCAAGCTATCTAATATGTGCTGTATATTTCAGGCTGACTGAGGAAGTTGGATCATGCGACATGGTTCTTGACAGTGTATTGTCATCTCCTCACAGGAGGTCACCATCAATCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTGCAGCGGCATCGCTTCCTCCTGACAGCACTTGCCCTCTTGACCTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCGTCCTCCTCTTGCTTTGGACTGACTGGGACGCAAAAAGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTGATACTCGGGATTGTGCTCCAAAGCGTGTGTCTTTTGTTTGTAGTTCTCGACAATTTGTGTTGAAGGCTTGAAAAAGAAAAAAAAAAAATGAAGTTAGTCAGTTTGTTATACAAGGTTGTGTAGTCAGATGTAAGCGAACTCTCTATACATGATATCTGAGAAAAAAATTGCATTAATCAATCATTTTGTGTTTGCAGATTTATAATGTATATGCTTTTCAGTGCATGAAAATTAA

mRNA sequence

ATGGGTTGTAGAAAGCTGACTGAGGAAGTTGGATCATGCGACATGGTTCTTGACAGTGTATTGTCATCTCCTCACAGGAGGTCACCATCAATCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTGCAGCGGCATCGCTTCCTCCTGACAGCACTTGCCCTCTTGACCTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCGTCCTCCTCTTGCTTTGGACTGACTGGGACGCAAAAAGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTGATACTCGGGATTGTGCTCCAAAGCGTGTGTCTTTTGTTTGTAGTTCTCGACAATTTGTGTTGAAGGCTTGAAAAAGAAAAAAAAAAAATGAAGTTAGTCAGTTTGTTATACAAGGTTGTGTAGTCAGATGTAAGCGAACTCTCTATACATGATATCTGAGAAAAAAATTGCATTAATCAATCATTTTGTGTTTGCAGATTTATAATGTATATGCTTTTCAGTGCATGAAAATTAA

Coding sequence (CDS)

ATGGGTTGTAGAAAGCTGACTGAGGAAGTTGGATCATGCGACATGGTTCTTGACAGTGTATTGTCATCTCCTCACAGGAGGTCACCATCAATCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTGCAGCGGCATCGCTTCCTCCTGACAGCACTTGCCCTCTTGACCTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCGTCCTCCTCTTGCTTTGGACTGACTGGGACGCAAAAAGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTGA

Protein sequence

MGCRKLTEEVGSCDMVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL
BLAST of ClCG09G003430 vs. TrEMBL
Match: A0A0A0K6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.0e-47
Identity = 97/103 (94.17%), Postives = 98/103 (95.15%), Query Frame = 1

Query: 5   KLTEEVGSCDMVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCT 64
           +LTEE GSC MVLDSVLSSPHRRSPS RKSFPNELGSWSTLVQRHRFLLTAL LLTFLCT
Sbjct: 17  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 76

Query: 65  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           IYLYFAVTLGSSSSCFGLTGTQKAQC LELAKTSMAKGKLKIL
Sbjct: 77  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

BLAST of ClCG09G003430 vs. TrEMBL
Match: B9RGQ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-33
Identity = 77/102 (75.49%), Postives = 86/102 (84.31%), Query Frame = 1

Query: 5   KLTEEVGSCDMVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLC 64
           +L E V   DMVLD++LSSPHRRSPS RK FP +ELGSWSTLVQRHRFLLTAL LL FLC
Sbjct: 18  RLVEGVRLKDMVLDNILSSPHRRSPSFRKQFPRDELGSWSTLVQRHRFLLTALVLLAFLC 77

Query: 65  TIYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLK 106
           TIYLYFAVTLG++ SC GLTG QKA C LELAK+S+ KGK+K
Sbjct: 78  TIYLYFAVTLGATGSCSGLTGKQKALCNLELAKSSV-KGKMK 118

BLAST of ClCG09G003430 vs. TrEMBL
Match: A0A0A0L9L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTL 74
           MVLDS+L+SPHRRSPS RK FP NELGSWSTL +RHRFLLTALALLTFLCTIYLYFA+TL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 75  G-SSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           G ++SSC GLTGTQ+  C+LE AK S+AKGKLK L
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

BLAST of ClCG09G003430 vs. TrEMBL
Match: M5WZY1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTL 74
           MVLDS+LSSP R+S S RK F  NELGSWSTL QRHRFLLTALALLTFLCT+YLYFAVTL
Sbjct: 69  MVLDSILSSPVRKSASFRKQFSQNELGSWSTLFQRHRFLLTALALLTFLCTVYLYFAVTL 128

Query: 75  GSSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           G+S +C GL+GTQKA C+LE AKTS+A GKLKIL
Sbjct: 129 GASPTCSGLSGTQKALCRLEHAKTSVAHGKLKIL 162

BLAST of ClCG09G003430 vs. TrEMBL
Match: B9NEV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTL 74
           MVLDS+++SPHRRSPS RK FP +ELGSWSTL+QRHRFLLTA ALL FLCTIYLYFAVTL
Sbjct: 1   MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 75  GSSSSCFGLTGTQKAQCQLELAKTSMAKGKLK 106
           G++ SC GLTGT+K  C+LELAK S+  GKLK
Sbjct: 61  GATESCSGLTGTKKTLCRLELAKDSVGNGKLK 92

BLAST of ClCG09G003430 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-27
Identity = 60/92 (65.22%), Postives = 75/92 (81.52%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTLG 74
           MVLD ++SSP RR   ++K + +ELGSWSTL+QRH++LLTALALL FLCT+YLYFAVTLG
Sbjct: 1   MVLDGLVSSPSRRQQCLKKQW-DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLG 60

Query: 75  S-SSSCFGLTGTQKAQCQLELAKTSMAKGKLK 106
           +  SSC+GLTG  KA CQL+L + +++KGKLK
Sbjct: 61  ARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

BLAST of ClCG09G003430 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTLG 74
           MVLD ++SSP RR  +++K + ++LGS ST+VQRHRFLLTA+ LL FLCTIY+YFAVTLG
Sbjct: 1   MVLDGIVSSPLRRPHALKKQW-DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTLG 60

Query: 75  SSS-SCFGLTGTQKAQCQLELAKTSMAKGKLK 106
           +    C G+TG  KA CQ+E  + S + GKLK
Sbjct: 61  ARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

BLAST of ClCG09G003430 vs. NCBI nr
Match: gi|700189975|gb|KGN45208.1| (hypothetical protein Csa_7G431400 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 7.2e-47
Identity = 97/103 (94.17%), Postives = 98/103 (95.15%), Query Frame = 1

Query: 5   KLTEEVGSCDMVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCT 64
           +LTEE GSC MVLDSVLSSPHRRSPS RKSFPNELGSWSTLVQRHRFLLTAL LLTFLCT
Sbjct: 17  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 76

Query: 65  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           IYLYFAVTLGSSSSCFGLTGTQKAQC LELAKTSMAKGKLKIL
Sbjct: 77  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

BLAST of ClCG09G003430 vs. NCBI nr
Match: gi|659122533|ref|XP_008461194.1| (PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1

Query: 6   LTEEVGSCDMVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCTI 65
           LTEE+GSC+MVLDSVLSSPHRRSPS RKSFPNELGSWSTL+QRHRFLLTAL LLTFLCTI
Sbjct: 2   LTEEIGSCNMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTI 61

Query: 66  YLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           YLYFAVTLGSSSSC+GLTGTQKAQCQLELAKTS+AKGKLKIL
Sbjct: 62  YLYFAVTLGSSSSCYGLTGTQKAQCQLELAKTSIAKGKLKIL 103

BLAST of ClCG09G003430 vs. NCBI nr
Match: gi|778728887|ref|XP_011659492.1| (PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-42
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFPNELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTLG 74
           MVLDSVLSSPHRRSPS RKSFPNELGSWSTLVQRHRFLLTAL LLTFLCTIYLYFAVTLG
Sbjct: 1   MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 75  SSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           SSSSCFGLTGTQKAQC LELAKTSMAKGKLKIL
Sbjct: 61  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

BLAST of ClCG09G003430 vs. NCBI nr
Match: gi|255543409|ref|XP_002512767.1| (PREDICTED: uncharacterized protein LOC8280287 isoform X1 [Ricinus communis])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 77/102 (75.49%), Postives = 86/102 (84.31%), Query Frame = 1

Query: 5   KLTEEVGSCDMVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLC 64
           +L E V   DMVLD++LSSPHRRSPS RK FP +ELGSWSTLVQRHRFLLTAL LL FLC
Sbjct: 18  RLVEGVRLKDMVLDNILSSPHRRSPSFRKQFPRDELGSWSTLVQRHRFLLTALVLLAFLC 77

Query: 65  TIYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSMAKGKLK 106
           TIYLYFAVTLG++ SC GLTG QKA C LELAK+S+ KGK+K
Sbjct: 78  TIYLYFAVTLGATGSCSGLTGKQKALCNLELAKSSV-KGKMK 118

BLAST of ClCG09G003430 vs. NCBI nr
Match: gi|778682913|ref|XP_011651806.1| (PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1

Query: 15  MVLDSVLSSPHRRSPSIRKSFP-NELGSWSTLVQRHRFLLTALALLTFLCTIYLYFAVTL 74
           MVLDS+L+SPHRRSPS RK FP NELGSWSTL +RHRFLLTALALLTFLCTIYLYFA+TL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 75  G-SSSSCFGLTGTQKAQCQLELAKTSMAKGKLKIL 108
           G ++SSC GLTGTQ+  C+LE AK S+AKGKLK L
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K6S1_CUCSA5.0e-4794.17Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1[more]
B9RGQ8_RICCO7.0e-3375.49Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1[more]
A0A0A0L9L6_CUCSA1.2e-3278.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710730 PE=4 SV=1[more]
M5WZY1_PRUPE1.7e-3178.72Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018500mg PE=4 S... [more]
B9NEV9_POPTR3.0e-3176.09Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07570g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G16170.12.3e-2765.22 unknown protein[more]
AT1G79660.13.5e-2358.70 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700189975|gb|KGN45208.1|7.2e-4794.17hypothetical protein Csa_7G431400 [Cucumis sativus][more]
gi|659122533|ref|XP_008461194.1|1.2e-4693.14PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo][more]
gi|778728887|ref|XP_011659492.1|2.4e-4296.77PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus][more]
gi|255543409|ref|XP_002512767.1|1.0e-3275.49PREDICTED: uncharacterized protein LOC8280287 isoform X1 [Ricinus communis][more]
gi|778682913|ref|XP_011651806.1|1.7e-3278.95PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G003430.1ClCG09G003430.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34774FAMILY NOT NAMEDcoord: 16..107
score: 5.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG09G003430ClCG10G012830Watermelon (Charleston Gray)wcgwcgB008
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G003430Silver-seed gourdcarwcgB0346
ClCG09G003430Wax gourdwcgwgoB064
ClCG09G003430Cucumber (Gy14) v1cgywcgB468
ClCG09G003430Wild cucumber (PI 183967)cpiwcgB279
ClCG09G003430Melon (DHL92) v3.5.1mewcgB174
ClCG09G003430Cucurbita pepo (Zucchini)cpewcgB483