CmoCh17G008780.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G008780.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant/F20B17-9 protein
Location	Cmo_Chr17 : 7998302 .. 7998589 (+)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

mRNA sequence

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Coding sequence (CDS)

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Homology

[Close]

BLAST of CmoCh17G008780.1 vs. TrEMBL
Match: A0A0A0K6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.7e-35
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
           MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 27  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 86

Query: 63  SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 87  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780.1 vs. TrEMBL
Match: A0A0L9VFP9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g254400 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780.1 vs. TrEMBL
Match: V7BTB8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G195900g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.3e-29
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G S++C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GPSATCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780.1 vs. TrEMBL
Match: A0A151S136_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029832 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 72/94 (76.60%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  RSPS  + F  DEL  WSTLVQRHRFLL+ALVLL  LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLRSPSLRRQFAKDELGSWSTLVQRHRFLLSALVLLAILCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          GSS +C GLTGAQKA C  ELVK SMAKGKLKIL
Sbjct: 61 GSSGTCSGLTGAQKASCHMELVKDSMAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780.1 vs. TrEMBL
Match: A0A0R0FWS3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G063700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 70/94 (74.47%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
           MVLDS L+SP  +SPSF + FT DEL  WSTL QRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 15  MVLDSILTSPRLKSPSFRRQFTKDELGSWSTLFQRHRFLLSALVLLTLLCTVYLYFAVTL 74

Query: 63  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 75  GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 108

[Close]

BLAST of CmoCh17G008780.1 vs. TAIR10
Match: AT1G16170.1 (AT1G16170.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-22
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR     K + DEL  WSTL+QRH++LLTAL LL  LCT+YLYFAVTLG
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW-DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLG 60

Query: 63 S-SSSCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +  SSC+GLTG  KA C  +LV+ +++KGKLK
Sbjct: 61 ARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

[Close]

BLAST of CmoCh17G008780.1 vs. TAIR10
Match: AT1G79660.1 (AT1G79660.1 unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-18
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR P   K   D+L   ST+VQRHRFLLTA++LL  LCTIY+YFAVTLG
Sbjct: 1  MVLDGIVSSPLRR-PHALKKQWDDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTLG 60

Query: 63 SSS-SCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +    C G+TG  KA C  E ++ S + GKLK
Sbjct: 61 ARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

[Close]

BLAST of CmoCh17G008780.1 vs. NCBI nr
Match: gi|778728887|ref|XP_011659492.1| (PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 1  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780.1 vs. NCBI nr
Match: gi|700189975|gb|KGN45208.1| (hypothetical protein Csa_7G431400 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3   MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
           MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 27  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 86

Query: 63  SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 87  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780.1 vs. NCBI nr
Match: gi|659122533|ref|XP_008461194.1| (PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 2   HMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 61
           +MVLDS LSSPHRRSPSF KSF +EL  WSTL+QRHRFLLTALVLLT LCTIYLYFAVTL
Sbjct: 10  NMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTIYLYFAVTL 69

Query: 62  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           GSSSSC+GLTG QKA+C  EL KTS+AKGKLKIL
Sbjct: 70  GSSSSCYGLTGTQKAQCQLELAKTSIAKGKLKIL 103

[Close]

BLAST of CmoCh17G008780.1 vs. NCBI nr
Match: gi|920712636|gb|KOM53885.1| (hypothetical protein LR48_Vigan09g254400 [Vigna angularis])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G+S +C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GASGTCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

[Close]

BLAST of CmoCh17G008780.1 vs. NCBI nr
Match: gi|593695585|ref|XP_007148291.1| (hypothetical protein PHAVU_006G195900g [Phaseolus vulgaris])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 3  MVLDSALSSPHRRSPSFCKSFT-DELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 62
          MVLDS LSSP  +SPSF + FT DEL  WSTLVQRHRFLL+ALVLLT LCT+YLYFAVTL
Sbjct: 1  MVLDSILSSPRLKSPSFRRQFTKDELGSWSTLVQRHRFLLSALVLLTLLCTVYLYFAVTL 60

Query: 63 GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          G S++C GLTGAQKA C  ELVK S+AKGKLKIL
Sbjct: 61 GPSATCSGLTGAQKASCHMELVKDSVAKGKLKIL 94

The following BLAST results are available for this feature:

BLAST of CmoCh17G008780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G008780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S1_CUCSA	8.7e-35	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431400 PE=4 SV=1	[more]
A0A0L9VFP9_PHAAN	7.2e-29	76.60	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g254400 PE=4 SV=1	[more]
V7BTB8_PHAVU	9.3e-29	76.60	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G195900g PE=4 SV=1	[more]
A0A151S136_CAJCA	3.5e-28	76.60	Uncharacterized protein OS=Cajanus cajan GN=KK1_029832 PE=4 SV=1	[more]
A0A0R0FWS3_SOYBN	6.1e-28	74.47	Uncharacterized protein OS=Glycine max GN=GLYMA_15G063700 PE=4 SV=1	[more]

BLAST of CmoCh17G008780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16170.1	9.9e-22	60.87	unknown protein	[more]
AT1G79660.1	1.0e-18	56.52	unknown protein	[more]

BLAST of CmoCh17G008780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728887\|ref\|XP_011659492.1\|	1.3e-34	87.10	PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus]	[more]
gi\|700189975\|gb\|KGN45208.1\|	1.3e-34	87.10	hypothetical protein Csa_7G431400 [Cucumis sativus]	[more]
gi\|659122533\|ref\|XP_008461194.1\|	1.1e-33	82.98	PREDICTED: uncharacterized protein LOC103499851 [Cucumis melo]	[more]
gi\|920712636\|gb\|KOM53885.1\|	1.0e-28	76.60	hypothetical protein LR48_Vigan09g254400 [Vigna angularis]	[more]
gi\|593695585\|ref\|XP_007148291.1\|	1.3e-28	76.60	hypothetical protein PHAVU_006G195900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G008780	CmoCh17G008780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008780.1	CmoCh17G008780.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008780.1.exon.1	CmoCh17G008780.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008780.1.CDS.1	CmoCh17G008780.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	FAMILY NOT NAMED	coord: 4..95 score: 3.0