CmoCh16G002360 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ethylene-responsive transcription factor 3
Location	Cmo_Chr16 : 1042470 .. 1043063 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCAGAGGAATTCTTATCCATAGAATTCATAACCCAATTTCTGTTGGTAGATTCCTCAGATCACCAAACCCATTTCCAAACAGATTCCCCCTTTCTCCACTCCATCAAATTGGAAGATTTCATTTTCGATTCCCCAATTCCGCCATCACCGCCTCCGGCGGAAGGCTGCTACAACGACACGAAGGCCGGCGAAGTTGTAGACTGGTCGACGCCCAAGACCGACATGTCGGGGCAGGCCAGCAAAGCCGATGCGGAAGCCTCTGTGGCAGGGAAGACAGACACCGACGGGAAGGGGAGGAGTCATTTCCGGGGAGTACGACGGCGGCCGTGGGGGAAATTTGCGGCTGAGATTCGTGACCCGACCCGGAAGGGGATTCGGGTTTGGTTGGGGACTTACGACAGTGATATAGACGCGGCTAAGGCCTACGACTGTGCGGCGTTTAGACTGAGAGGGAGGAAAGCCGTTTTGAATTTCCCATTGGAGGCCGGAGAACCCGACCCGCCGGCGGCGTCCGGCCAGAAGAGGGGAAGGGGGCAGAAATGGAGGAATATTCCCAAGGCATTGAAGGCAATGGATGAGAAGTAA

mRNA sequence

ATGGCGTCCTCAGAGGAATTCTTATCCATAGAATTCATAACCCAATTTCTGTTGGTAGATTCCTCAGATCACCAAACCCATTTCCAAACAGATTCCCCCTTTCTCCACTCCATCAAATTGGAAGATTTCATTTTCGATTCCCCAATTCCGCCATCACCGCCTCCGGCGGAAGGCTGCTACAACGACACGAAGGCCGGCGAAGTTGTAGACTGGTCGACGCCCAAGACCGACATGTCGGGGCAGGCCAGCAAAGCCGATGCGGAAGCCTCTGTGGCAGGGAAGACAGACACCGACGGGAAGGGGAGGAGTCATTTCCGGGGAGTACGACGGCGGCCGTGGGGGAAATTTGCGGCTGAGATTCGTGACCCGACCCGGAAGGGGATTCGGGTTTGGTTGGGGACTTACGACAGTGATATAGACGCGGCTAAGGCCTACGACTGTGCGGCGTTTAGACTGAGAGGGAGGAAAGCCGTTTTGAATTTCCCATTGGAGGCCGGAGAACCCGACCCGCCGGCGGCGTCCGGCCAGAAGAGGGGAAGGGGGCAGAAATGGAGGAATATTCCCAAGGCATTGAAGGCAATGGATGAGAAGTAA

Coding sequence (CDS)

ATGGCGTCCTCAGAGGAATTCTTATCCATAGAATTCATAACCCAATTTCTGTTGGTAGATTCCTCAGATCACCAAACCCATTTCCAAACAGATTCCCCCTTTCTCCACTCCATCAAATTGGAAGATTTCATTTTCGATTCCCCAATTCCGCCATCACCGCCTCCGGCGGAAGGCTGCTACAACGACACGAAGGCCGGCGAAGTTGTAGACTGGTCGACGCCCAAGACCGACATGTCGGGGCAGGCCAGCAAAGCCGATGCGGAAGCCTCTGTGGCAGGGAAGACAGACACCGACGGGAAGGGGAGGAGTCATTTCCGGGGAGTACGACGGCGGCCGTGGGGGAAATTTGCGGCTGAGATTCGTGACCCGACCCGGAAGGGGATTCGGGTTTGGTTGGGGACTTACGACAGTGATATAGACGCGGCTAAGGCCTACGACTGTGCGGCGTTTAGACTGAGAGGGAGGAAAGCCGTTTTGAATTTCCCATTGGAGGCCGGAGAACCCGACCCGCCGGCGGCGTCCGGCCAGAAGAGGGGAAGGGGGCAGAAATGGAGGAATATTCCCAAGGCATTGAAGGCAATGGATGAGAAGTAA

Homology

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BLAST of CmoCh16G002360 vs. Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.2e-32
Identity = 83/190 (43.68%), Postives = 111/190 (58.42%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD---SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAE 60
           MAS EE   +E I   LL D          F  D+ F+  +    +  +  +P   P + 
Sbjct: 1   MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGL----WCIEPHVPKQEPDSP 60

Query: 61  GCYNDTKA-------GEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRR 120
               D+         GE    S+P+ + S    + D     A + + +   R H+RGVRR
Sbjct: 61  VLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDAR-HYRGVRR 120

Query: 121 RPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDP 180
           RPWGKFAAEIRDP +KG R+WLGT++SD+DAA+AYDCAAF+LRGRKAVLNFPL+AG+ + 
Sbjct: 121 RPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEA 180

[Close]

BLAST of CmoCh16G002360 vs. Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30
Identity = 71/155 (45.81%), Postives = 93/155 (60.00%), Query Frame = 1


Query: 40  LEDFIFD--------------SPIPPSPPPAEGCYNDTKAGEVVDWSTPKTDMSGQASKA 99
           +EDF+FD              +P+P   P +     D+   E++      +  S   +  
Sbjct: 28  IEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSP 87

Query: 100 DAEASVAGKTDTDGKGRSHFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAY 159
           + E     K     +   H+RGVRRRPWGKFAAEIRDP +KG R+WLGT++SDIDAA+AY
Sbjct: 88  EVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAY 147

Query: 160 DCAAFRLRGRKAVLNFPLEAGEPDPPAASGQKRGR 181
           D AAF+LRGRKAVLNFPL+AG+ D P  S +KR R
Sbjct: 148 DYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

[Close]

BLAST of CmoCh16G002360 vs. Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-26
Identity = 75/189 (39.68%), Postives = 108/189 (57.14%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDS---PIPPSPPPAE 60
           MA+ +E L+I+FI+Q LL D        +TD P L + +L +F  ++    I    P   
Sbjct: 1   MATKQEALAIDFISQHLLTDF----VSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPN 60

Query: 61  GCYNDTKAGEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWGKFA 120
              N  K         P  ++S          +V+ KT+ + + R H+RGVRRRPWGK+A
Sbjct: 61  STLNQRKP--------PLPNLS-------VSRTVSTKTEKEEEER-HYRGVRRRPWGKYA 120

Query: 121 AEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQK 180
           AEIRDP +KG R+WLGTYD+ ++A +AYD AAF+LRGRKA+LNFPL+        +    
Sbjct: 121 AEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGV 169

Query: 181 RGRGQKWRN 187
            G G++ R+
Sbjct: 181 IGLGKRKRD 169

[Close]

BLAST of CmoCh16G002360 vs. Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-25
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 102 RSHFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNF 161
           + H+RGVR+RPWGKFAAEIRDP ++G RVWLGT+D+ I+AA+AYD AAFRLRG KA+LNF
Sbjct: 153 KKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212

Query: 162 PLEAGEPDPPAASGQ---KRGRGQKWRNIPKALK 193
           PLE G+  P A  G+   KR   +K   + K LK
Sbjct: 213 PLEVGKWKPRADEGEKKRKRDDDEKVTVVEKVLK 246

[Close]

BLAST of CmoCh16G002360 vs. Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-24
Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 88  EASVAGKTDTDGKGRSHFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDC 147
           +  V  K +     + H+RGVR+RPWGKFAAEIRDP RKG RVWLGT+D+ I+AAKAYD 
Sbjct: 128 QQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDR 187

Query: 148 AAFRLRGRKAVLNFPLEA-------GEPDPPAASGQKRGR 181
           AAF+LRG KA++NFPLE         E   PA SG+KR R
Sbjct: 188 AAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKRMR 227

[Close]

BLAST of CmoCh16G002360 vs. TrEMBL
Match: A0A0A0KXM4_CUCSA (DNA binding protein OS=Cucumis sativus GN=Csa_4G023020 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.0e-74
Identity = 153/200 (76.50%), Postives = 162/200 (81.00%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEGCY 60
           M SS+EFL+IEFITQFLL D SDHQT    DSPFLH IKLEDF FDSPIPP PPP E   
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQT----DSPFLHPIKLEDFFFDSPIPPLPPPPEISG 60

Query: 61  NDTKAGEVVDWST---PKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWGKFA 120
           NDTK G+VVD ST    + DMS QA    AE  VA    + GKGR HFRGVRRRPWGKFA
Sbjct: 61  NDTKPGKVVDPSTLPDHRPDMSTQA--CGAETKVAVVEASGGKGRRHFRGVRRRPWGKFA 120

Query: 121 AEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQK 180
           AEIRDPTRKG RVWLGTYDSDIDAAKAYDCAAFRLRGRKA+LNFPLEAGEPDPPAA+ +K
Sbjct: 121 AEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRK 180

Query: 181 RGRGQKWRNIPKALKAMDEK 198
           RGRGQKWRNIPKAL A +EK
Sbjct: 181 RGRGQKWRNIPKALMATNEK 194

[Close]

BLAST of CmoCh16G002360 vs. TrEMBL
Match: B9NBR0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15060g PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-34
Identity = 94/205 (45.85%), Postives = 125/205 (60.98%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD--SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEG 60
           MA+ EE  ++E I Q LL D  S+D        S    S+KLE  +  S   P+ P ++ 
Sbjct: 1   MATPEESSTLELIRQHLLGDFISTDEFISNLESSIASVSVKLESSLSGSE--PNSPISDQ 60

Query: 61  CYNDTKAG-------EVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRR 120
            Y+ T          E++D++ P+   SG +++      V  K    G+   H+RGVRRR
Sbjct: 61  SYHSTPETYSFEIKPEIIDFTPPEPVFSGSSNQYPPPEPV--KMTDKGETVRHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPP 180
           PWGKFAAEIRDPTRKG RVWLGT+DSD DAAKAYDCAAF++RGRKA+LNFP EAG   PP
Sbjct: 121 PWGKFAAEIRDPTRKGSRVWLGTFDSDTDAAKAYDCAAFKMRGRKAILNFPSEAGLSIPP 180

Query: 181 AASGQKRGRGQKWRNIPKALKAMDE 197
            A+G+KR R +    +P+++    E
Sbjct: 181 PATGRKRRRSKGEEVLPESVDVSTE 201

[Close]

BLAST of CmoCh16G002360 vs. TrEMBL
Match: T1QCY4_CARPA (Ethylene-responsive transcription factor 3 OS=Carica papaya GN=ERF3 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-34
Identity = 88/189 (46.56%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEGCY 60
           MA+ EE  ++E I Q LL D S   T    DS FL +++   F F+       P      
Sbjct: 1   MATLEESSTLELIRQHLLEDFS---TDLDFDSSFLSALQ---FNFNPQYKQEEP------ 60

Query: 61  NDTKAGEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWGKFAAEI 120
            D+   +  +   P+  +   + +    AS     + DG+ R H+RG RRRPWGKFAAEI
Sbjct: 61  -DSPISDTHNQFLPEIFLHVTSPEPGVSASCTEIMEPDGEERKHYRGXRRRPWGKFAAEI 120

Query: 121 RDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQKRGR 180
           RDP RKG R+WLGT+DSD+DAAKAYDCAAF+ RGRKA+LNFPLEAG+  PPA +G+KR R
Sbjct: 121 RDPNRKGSRIWLGTFDSDVDAAKAYDCAAFKFRGRKAILNFPLEAGKCGPPATTGRKRRR 176

Query: 181 GQKWRNIPK 190
            +K    P+
Sbjct: 181 EKKGVESPE 176

[Close]

BLAST of CmoCh16G002360 vs. TrEMBL
Match: A0A058ZWQ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00128 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-33
Identity = 85/186 (45.70%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEGCY 60
           MA  +E  ++E ITQ+LL DS +           L  +K E+   D P P SP      +
Sbjct: 148 MAELDESSTLELITQYLLEDSINLAQ--------LQPVKTENLFLD-PGPDSPDSDHPTW 207

Query: 61  NDTKA------GEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWG 120
            D +        E +   +P++++       D   S A         ++ +RGVRRRPWG
Sbjct: 208 QDLETPNLEIKAEPITLESPESELGSPEKNQDEAGSAA---------KASYRGVRRRPWG 267

Query: 121 KFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAAS 180
           K+AAEIRDPTRKG RVWLGTYD+D+DAAKAYDCAAF++RGRKA+LNFPLEAG+  PP   
Sbjct: 268 KYAAEIRDPTRKGSRVWLGTYDTDVDAAKAYDCAAFKMRGRKAILNFPLEAGKSAPPPNP 315

[Close]

BLAST of CmoCh16G002360 vs. TrEMBL
Match: B9GK33_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11800g PE=4 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-33
Identity = 91/205 (44.39%), Postives = 123/205 (60.00%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD--SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEG 60
           MA+ +E  ++E I Q LL D  S+D        +    S+KLE+ +  S    + P ++ 
Sbjct: 1   MATPKESSTLELIRQHLLGDFTSTDEFISNLESTVASISVKLENSLSGSE--SNSPVSDQ 60

Query: 61  CYNDTKA-------GEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRR 120
            Y  T+         E++D  TP   M   +S       +   TD +     H+RGVRRR
Sbjct: 61  SYYSTQETCSFEIKSEIIDL-TPPEPMFSDSSNQSPPPELVKMTDREETILRHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPP 180
           PWGKFAAEIRDPTRKG RVWLGT+DSDIDAA+AYDCAAF++RGRKA+LNFPLEAG    P
Sbjct: 121 PWGKFAAEIRDPTRKGSRVWLGTFDSDIDAARAYDCAAFKMRGRKAILNFPLEAGLSSSP 180

Query: 181 AASGQKRGRGQKWRNIPKALKAMDE 197
            A+G+KR R ++   +P+++    E
Sbjct: 181 PATGRKRRRVKREEVLPESVDVSPE 202

[Close]

BLAST of CmoCh16G002360 vs. TAIR10
Match: AT5G07580.1 (AT5G07580.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-33
Identity = 83/190 (43.68%), Postives = 111/190 (58.42%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD---SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAE 60
           MAS EE   +E I   LL D          F  D+ F+  +    +  +  +P   P + 
Sbjct: 68  MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGL----WCIEPHVPKQEPDSP 127

Query: 61  GCYNDTKA-------GEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRR 120
               D+         GE    S+P+ + S    + D     A + + +   R H+RGVRR
Sbjct: 128 VLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDAR-HYRGVRR 187

Query: 121 RPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDP 180
           RPWGKFAAEIRDP +KG R+WLGT++SD+DAA+AYDCAAF+LRGRKAVLNFPL+AG+ + 
Sbjct: 188 RPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEA 247

[Close]

BLAST of CmoCh16G002360 vs. TAIR10
Match: AT5G61590.1 (AT5G61590.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 71/155 (45.81%), Postives = 93/155 (60.00%), Query Frame = 1


Query: 40  LEDFIFD--------------SPIPPSPPPAEGCYNDTKAGEVVDWSTPKTDMSGQASKA 99
           +EDF+FD              +P+P   P +     D+   E++      +  S   +  
Sbjct: 28  IEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSP 87

Query: 100 DAEASVAGKTDTDGKGRSHFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAY 159
           + E     K     +   H+RGVRRRPWGKFAAEIRDP +KG R+WLGT++SDIDAA+AY
Sbjct: 88  EVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAY 147

Query: 160 DCAAFRLRGRKAVLNFPLEAGEPDPPAASGQKRGR 181
           D AAF+LRGRKAVLNFPL+AG+ D P  S +KR R
Sbjct: 148 DYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

[Close]

BLAST of CmoCh16G002360 vs. TAIR10
Match: AT5G61600.1 (AT5G61600.1 ethylene response factor 104)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 75/189 (39.68%), Postives = 108/189 (57.14%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDS---PIPPSPPPAE 60
           MA+ +E L+I+FI+Q LL D        +TD P L + +L +F  ++    I    P   
Sbjct: 1   MATKQEALAIDFISQHLLTDF----VSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPN 60

Query: 61  GCYNDTKAGEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWGKFA 120
              N  K         P  ++S          +V+ KT+ + + R H+RGVRRRPWGK+A
Sbjct: 61  STLNQRKP--------PLPNLS-------VSRTVSTKTEKEEEER-HYRGVRRRPWGKYA 120

Query: 121 AEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQK 180
           AEIRDP +KG R+WLGTYD+ ++A +AYD AAF+LRGRKA+LNFPL+        +    
Sbjct: 121 AEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGV 169

Query: 181 RGRGQKWRN 187
            G G++ R+
Sbjct: 181 IGLGKRKRD 169

[Close]

BLAST of CmoCh16G002360 vs. TAIR10
Match: AT5G47230.1 (AT5G47230.1 ethylene responsive element binding factor 5)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 102 RSHFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNF 161
           + H+RGVR+RPWGKFAAEIRDP ++G RVWLGT+D+ I+AA+AYD AAFRLRG KA+LNF
Sbjct: 153 KKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212

Query: 162 PLEAGEPDPPAASGQ---KRGRGQKWRNIPKALK 193
           PLE G+  P A  G+   KR   +K   + K LK
Sbjct: 213 PLEVGKWKPRADEGEKKRKRDDDEKVTVVEKVLK 246

[Close]

BLAST of CmoCh16G002360 vs. TAIR10
Match: AT5G51190.1 (AT5G51190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-25
Identity = 47/64 (73.44%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 104 HFRGVRRRPWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPL 163
           H+RGVRRRPWGK+AAEIRDP +KG+RVWLGT+D+ ++AA+ YD AAF+LRG KA+LNFPL
Sbjct: 71  HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPL 130

Query: 164 EAGE 168
           EAG+
Sbjct: 131 EAGK 134

[Close]

BLAST of CmoCh16G002360 vs. NCBI nr
Match: gi|659107812|ref|XP_008453871.1| (PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.4e-75
Identity = 154/200 (77.00%), Postives = 164/200 (82.00%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEGCY 60
           M SS+EFL+IEFITQFLL D SDHQTHF TDSPFLH IKLEDF FDSPIPP PPP E   
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQTHFPTDSPFLHPIKLEDFFFDSPIPPLPPPPEISD 60

Query: 61  NDTKA-GEVVDWST-PKTDMSGQASKADAEASVAGKTDTDGK-GRSHFRGVRRRPWGKFA 120
           NDTK  G+VVD ST P  DMS QA  A+  A V+    + GK GR HFRGVRRRPWGKFA
Sbjct: 61  NDTKKPGKVVDQSTTPDPDMSTQACGAELAAKVSVVEASGGKAGRRHFRGVRRRPWGKFA 120

Query: 121 AEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQK 180
           AEIRDPTRKG RVWLGTYDSDIDAAKAYDCAAFRLRGRKA+LNFPLEAGEPDPP A+ +K
Sbjct: 121 AEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPTAADRK 180

Query: 181 RGRGQKWRNIPKALKAMDEK 198
           RGRGQKWRNI KAL A +EK
Sbjct: 181 RGRGQKWRNISKALMATNEK 200

[Close]

BLAST of CmoCh16G002360 vs. NCBI nr
Match: gi|449458407|ref|XP_004146939.1| (PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 4.4e-74
Identity = 153/200 (76.50%), Postives = 162/200 (81.00%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVDSSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEGCY 60
           M SS+EFL+IEFITQFLL D SDHQT    DSPFLH IKLEDF FDSPIPP PPP E   
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQT----DSPFLHPIKLEDFFFDSPIPPLPPPPEISG 60

Query: 61  NDTKAGEVVDWST---PKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRRPWGKFA 120
           NDTK G+VVD ST    + DMS QA    AE  VA    + GKGR HFRGVRRRPWGKFA
Sbjct: 61  NDTKPGKVVDPSTLPDHRPDMSTQA--CGAETKVAVVEASGGKGRRHFRGVRRRPWGKFA 120

Query: 121 AEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPPAASGQK 180
           AEIRDPTRKG RVWLGTYDSDIDAAKAYDCAAFRLRGRKA+LNFPLEAGEPDPPAA+ +K
Sbjct: 121 AEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRK 180

Query: 181 RGRGQKWRNIPKALKAMDEK 198
           RGRGQKWRNIPKAL A +EK
Sbjct: 181 RGRGQKWRNIPKALMATNEK 194

[Close]

BLAST of CmoCh16G002360 vs. NCBI nr
Match: gi|743824879|ref|XP_011022363.1| (PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica])

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 92/205 (44.88%), Postives = 127/205 (61.95%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD--SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEG 60
           MA+ EE  ++E I + LL D  S+D        S    S+KLE  +  S   P+ P ++ 
Sbjct: 1   MATPEESSTLELIRKHLLGDFTSTDEFISNLESSIASVSVKLESSLSGSE--PNSPVSDQ 60

Query: 61  CYNDTKAG-------EVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRR 120
            Y+ T+         E++D + P+   SG +++      V  K    G+   H+RGVRRR
Sbjct: 61  SYHSTQEAYSFEIKPEIIDLTPPEPVFSGSSNQYPPPEPV--KMTDKGETVRHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPP 180
           PWGKFAAEIRDP RKG RVWLGT+D+D+DAAKAYDCAAF++RGRKA+LNFP EAG   PP
Sbjct: 121 PWGKFAAEIRDPIRKGSRVWLGTFDTDVDAAKAYDCAAFKMRGRKAILNFPSEAGLSSPP 180

Query: 181 AASGQKRGRGQKWRNIPKALKAMDE 197
            A+G+KRGR ++   +P+++    E
Sbjct: 181 PATGRKRGRSKREEVLPESVDVSTE 201

[Close]

BLAST of CmoCh16G002360 vs. NCBI nr
Match: gi|566162743|ref|XP_006385827.1| (hypothetical protein POPTR_0003s15060g [Populus trichocarpa])

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 94/205 (45.85%), Postives = 125/205 (60.98%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD--SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEG 60
           MA+ EE  ++E I Q LL D  S+D        S    S+KLE  +  S   P+ P ++ 
Sbjct: 1   MATPEESSTLELIRQHLLGDFISTDEFISNLESSIASVSVKLESSLSGSE--PNSPISDQ 60

Query: 61  CYNDTKAG-------EVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRR 120
            Y+ T          E++D++ P+   SG +++      V  K    G+   H+RGVRRR
Sbjct: 61  SYHSTPETYSFEIKPEIIDFTPPEPVFSGSSNQYPPPEPV--KMTDKGETVRHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPP 180
           PWGKFAAEIRDPTRKG RVWLGT+DSD DAAKAYDCAAF++RGRKA+LNFP EAG   PP
Sbjct: 121 PWGKFAAEIRDPTRKGSRVWLGTFDSDTDAAKAYDCAAFKMRGRKAILNFPSEAGLSIPP 180

Query: 181 AASGQKRGRGQKWRNIPKALKAMDE 197
            A+G+KR R +    +P+++    E
Sbjct: 181 PATGRKRRRSKGEEVLPESVDVSTE 201

[Close]

BLAST of CmoCh16G002360 vs. NCBI nr
Match: gi|743842563|ref|XP_011026727.1| (PREDICTED: ethylene-responsive transcription factor ERF106 [Populus euphratica])

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 93/205 (45.37%), Postives = 126/205 (61.46%), Query Frame = 1


Query: 1   MASSEEFLSIEFITQFLLVD--SSDHQTHFQTDSPFLHSIKLEDFIFDSPIPPSPPPAEG 60
           MA+ EE  ++E I Q+LL D  S+D        +    S+KLED +  S    + P ++ 
Sbjct: 1   MATPEESSTLELIRQYLLGDFTSTDEFISHLESTVATISVKLEDSLSGSE--SNSPVSDQ 60

Query: 61  CYNDTKA-------GEVVDWSTPKTDMSGQASKADAEASVAGKTDTDGKGRSHFRGVRRR 120
            Y  T+         E++D + P+   S  ++++     V  K D +     H+RGVRRR
Sbjct: 61  SYYSTQETCSFEIKSEIIDLTPPEPMFSDSSNQSPPPELVKMK-DREETILRHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGIRVWLGTYDSDIDAAKAYDCAAFRLRGRKAVLNFPLEAGEPDPP 180
           PWGKFAAEIRDPTRKG RVWLGT+DSDIDAAKAYDCAAF++RGRKA+LNFPLEAG    P
Sbjct: 121 PWGKFAAEIRDPTRKGSRVWLGTFDSDIDAAKAYDCAAFKMRGRKAILNFPLEAGLSSSP 180

Query: 181 AASGQKRGRGQKWRNIPKALKAMDE 197
            A+G+KR R ++   +P+ +    E
Sbjct: 181 PATGRKRRRVKREEVLPQPVDVSPE 202

The following BLAST results are available for this feature:

BLAST of CmoCh16G002360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF106_ARATH	9.2e-32	43.68	Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF107_ARATH	3.0e-30	45.81	Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF104_ARATH	3.4e-26	39.68	Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF102_ARATH	2.9e-25	60.64	Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 ...	[more]
ERF5_TOBAC	2.4e-24	58.00	Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=...	[more]

BLAST of CmoCh16G002360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM4_CUCSA	3.0e-74	76.50	DNA binding protein OS=Cucumis sativus GN=Csa_4G023020 PE=4 SV=1	[more]
B9NBR0_POPTR	1.8e-34	45.85	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15060g PE=4 SV=1	[more]
T1QCY4_CARPA	9.0e-34	46.56	Ethylene-responsive transcription factor 3 OS=Carica papaya GN=ERF3 PE=2 SV=1	[more]
A0A058ZWQ0_EUCGR	3.4e-33	45.70	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00128 PE=4 SV=1	[more]
B9GK33_POPTR	5.8e-33	44.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11800g PE=4 SV=2	[more]

BLAST of CmoCh16G002360 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07580.1	5.2e-33	43.68	Integrase-type DNA-binding superfamily protein	[more]
AT5G61590.1	1.7e-31	45.81	Integrase-type DNA-binding superfamily protein	[more]
AT5G61600.1	1.9e-27	39.68	ethylene response factor 104	[more]
AT5G47230.1	1.6e-26	60.64	ethylene responsive element binding factor 5	[more]
AT5G51190.1	3.1e-25	73.44	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CmoCh16G002360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107812\|ref\|XP_008453871.1\|	1.4e-75	77.00	PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis melo]	[more]
gi\|449458407\|ref\|XP_004146939.1\|	4.4e-74	76.50	PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis sativus]	[more]
gi\|743824879\|ref\|XP_011022363.1\|	3.1e-35	44.88	PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphrat...	[more]
gi\|566162743\|ref\|XP_006385827.1\|	2.6e-34	45.85	hypothetical protein POPTR_0003s15060g [Populus trichocarpa]	[more]
gi\|743842563\|ref\|XP_011026727.1\|	5.8e-34	45.37	PREDICTED: ethylene-responsive transcription factor ERF106 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002360.1	CmoCh16G002360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 144..164 score: 1.1E-12coord: 105..116 score: 1.1
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 104..163 score: 2.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 103..154 score: 4.5
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 104..168 score: 1.8
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 104..162 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 103..164 score: 1.24
None	No IPR available	PANTHER	PTHR31677	FAMILY NOT NAMED	coord: 104..174 score: 1.4
None	No IPR available	PANTHER	PTHR31677:SF24	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF106	coord: 104..174 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G002360	Cucsa.094100	Cucumber (Gy14) v1	cgycmoB0189
CmoCh16G002360	CmaCh16G002180	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002360	CmaCh04G003610	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002360	Cla010713	Watermelon (97103) v1	cmowmB307
CmoCh16G002360	Csa5G167110	Cucumber (Chinese Long) v2	cmocuB333
CmoCh16G002360	Csa4G023020	Cucumber (Chinese Long) v2	cmocuB321
CmoCh16G002360	MELO3C017645	Melon (DHL92) v3.5.1	cmomeB299
CmoCh16G002360	ClCG01G004700	Watermelon (Charleston Gray)	cmowcgB287
CmoCh16G002360	ClCG07G016980	Watermelon (Charleston Gray)	cmowcgB295
CmoCh16G002360	CSPI05G07450	Wild cucumber (PI 183967)	cmocpiB341
CmoCh16G002360	CSPI04G04150	Wild cucumber (PI 183967)	cmocpiB328
CmoCh16G002360	Lsi07G001160	Bottle gourd (USVL1VR-Ls)	cmolsiB312
CmoCh16G002360	Lsi09G004870	Bottle gourd (USVL1VR-Ls)	cmolsiB289
CmoCh16G002360	Cp4.1LG01g03420	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002360	Cp4.1LG05g07350	Cucurbita pepo (Zucchini)	cmocpeB325
CmoCh16G002360	MELO3C017645.2	Melon (DHL92) v3.6.1	cmomedB343
CmoCh16G002360	CsaV3_4G004210	Cucumber (Chinese Long) v3	cmocucB0384
CmoCh16G002360	CsaV3_5G004890	Cucumber (Chinese Long) v3	cmocucB0402
CmoCh16G002360	Cla97C07G144030	Watermelon (97103) v2	cmowmbB337
CmoCh16G002360	Cla97C01G004910	Watermelon (97103) v2	cmowmbB312
CmoCh16G002360	Bhi01G002006	Wax gourd	cmowgoB0438
CmoCh16G002360	CsGy5G004900	Cucumber (Gy14) v2	cgybcmoB598
CmoCh16G002360	CsGy4G004060	Cucumber (Gy14) v2	cgybcmoB464
CmoCh16G002360	Carg16760	Silver-seed gourd	carcmoB1175
CmoCh16G002360	Carg08494	Silver-seed gourd	carcmoB0967
CmoCh16G002360	Carg08035	Silver-seed gourd	carcmoB0509

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G002360	CmoCh02G009910	Cucurbita moschata (Rifu)	cmocmoB280
CmoCh16G002360	CmoCh04G003790	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002360	Cucurbita pepo (Zucchini)	cmocpeB307