Csa4G023020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G023020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ethylene-responsive transcription factor; contains IPR016177 (DNA-binding, integrase-type)
Location	Chr4 : 2595006 .. 2595755 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAACAAAACCCATCTGATCTTAAGACTTAAAAGTTAAATCCTTTAATCTCTCTCTGAAAATGGATTCCTCAGATGAATTCTTAACCATAGAATTCATCACCCAATTTCTATTGGGAGATTTCTCAGATCATCAAACAGACTCCCCCTTCCTCCACCCCATCAAACTGGAAGATTTCTTCTTCGATTCCCCAATTCCGCCGCTACCGCCGCCGCCAGAGATCTCCGGCAACGACACGAAGCCGGGCAAAGTTGTAGACCCATCGACGCTGCCTGATCATCGTCCCGACATGTCGACACAGGCCTGCGGGGCCGAGACGAAAGTCGCCGTGGTAGAGGCGAGTGGCGGAAAGGGGCGGAGGCATTTCCGGGGAGTACGGCGACGGCCATGGGGTAAATTCGCGGCGGAGATTCGTGACCCGACCCGGAAAGGGAGCCGGGTCTGGTTGGGGACTTACGACAGTGACATAGACGCGGCTAAGGCTTATGACTGTGCGGCGTTCAGGCTGAGAGGGAGGAAAGCCATTCTGAATTTTCCATTGGAGGCCGGAGAACCTGACCCGCCGGCGGCGGCTGACCGGAAAAGGGGGAGGGGGCAGAAATGGAGAAATATTCCGAAGGCATTGATGGCAACAAACGAAAAGTGAATGCTAATAATTGATGGGAAATTAAATTGAAAACAATAATCAGATATGAACTATCTTTTGTGATTGGGTTAAGTTAAATGTTTCTTTTCTTTTTTTT

mRNA sequence

ATGGATTCCTCAGATGAATTCTTAACCATAGAATTCATCACCCAATTTCTATTGGGAGATTTCTCAGATCATCAAACAGACTCCCCCTTCCTCCACCCCATCAAACTGGAAGATTTCTTCTTCGATTCCCCAATTCCGCCGCTACCGCCGCCGCCAGAGATCTCCGGCAACGACACGAAGCCGGGCAAAGTTGTAGACCCATCGACGCTGCCTGATCATCGTCCCGACATGTCGACACAGGCCTGCGGGGCCGAGACGAAAGTCGCCGTGGTAGAGGCGAGTGGCGGAAAGGGGCGGAGGCATTTCCGGGGAGTACGGCGACGGCCATGGGGTAAATTCGCGGCGGAGATTCGTGACCCGACCCGGAAAGGGAGCCGGGTCTGGTTGGGGACTTACGACAGTGACATAGACGCGGCTAAGGCTTATGACTGTGCGGCGTTCAGGCTGAGAGGGAGGAAAGCCATTCTGAATTTTCCATTGGAGGCCGGAGAACCTGACCCGCCGGCGGCGGCTGACCGGAAAAGGGGGAGGGGGCAGAAATGGAGAAATATTCCGAAGGCATTGATGGCAACAAACGAAAAGTGA

Coding sequence (CDS)

ATGGATTCCTCAGATGAATTCTTAACCATAGAATTCATCACCCAATTTCTATTGGGAGATTTCTCAGATCATCAAACAGACTCCCCCTTCCTCCACCCCATCAAACTGGAAGATTTCTTCTTCGATTCCCCAATTCCGCCGCTACCGCCGCCGCCAGAGATCTCCGGCAACGACACGAAGCCGGGCAAAGTTGTAGACCCATCGACGCTGCCTGATCATCGTCCCGACATGTCGACACAGGCCTGCGGGGCCGAGACGAAAGTCGCCGTGGTAGAGGCGAGTGGCGGAAAGGGGCGGAGGCATTTCCGGGGAGTACGGCGACGGCCATGGGGTAAATTCGCGGCGGAGATTCGTGACCCGACCCGGAAAGGGAGCCGGGTCTGGTTGGGGACTTACGACAGTGACATAGACGCGGCTAAGGCTTATGACTGTGCGGCGTTCAGGCTGAGAGGGAGGAAAGCCATTCTGAATTTTCCATTGGAGGCCGGAGAACCTGACCCGCCGGCGGCGGCTGACCGGAAAAGGGGGAGGGGGCAGAAATGGAGAAATATTCCGAAGGCATTGATGGCAACAAACGAAAAGTGA

Protein sequence

MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQKWRNIPKALMATNEK*

Homology

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BLAST of Csa4G023020 vs. Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.1e-32
Identity = 79/189 (41.80%), Postives = 111/189 (58.73%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDF-------SDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPE 60
           M S +E   +E I   LL D         D   D+ F+  +    +  +  +P   P   
Sbjct: 1   MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGL----WCIEPHVPKQEPDSP 60

Query: 61  ISGNDTKPGKV--VDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGR---RHFRGVRRR 120
           +   D+   +   V+  +     P++++ +   ET  +V +A   +     RH+RGVRRR
Sbjct: 61  VLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRR 120

Query: 121 PWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPP 178
           PWGKFAAEIRDP +KGSR+WLGT++SD+DAA+AYDCAAF+LRGRKA+LNFPL+AG+ + P
Sbjct: 121 PWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAP 180

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BLAST of Csa4G023020 vs. Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-31
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 36  LEDFFFDSP--------IPPLPPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETK 95
           +EDF FD          + P  P P++  +      V+DP +       M  ++  + + 
Sbjct: 28  IEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSP----VLDPDSYVQEILQMEAESSSSSST 87

Query: 96  VAVVEASGGKGR---------RHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDA 155
               E      R         RH+RGVRRRPWGKFAAEIRDP +KGSR+WLGT++SDIDA
Sbjct: 88  TTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDA 147

Query: 156 AKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGR 178
           A+AYD AAF+LRGRKA+LNFPL+AG+ D P  + RKR R
Sbjct: 148 ARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

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BLAST of Csa4G023020 vs. Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-30
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60
           M +  E L I+FI+Q LL DF   +TD P L   +L +F  ++       P  I+    K
Sbjct: 1   MATKQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETG------PRTITNQSPK 60

Query: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120
           P      STL   +P +   +    ++    +    +  RH+RGVRRRPWGK+AAEIRDP
Sbjct: 61  PN-----STLNQRKPPLPNLSV---SRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDP 120

Query: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180
            +KG R+WLGTYD+ ++A +AYD AAF+LRGRKAILNFPL+        + +   G G++
Sbjct: 121 NKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKR 169

Query: 181 WRN 184
            R+
Sbjct: 181 KRD 169

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BLAST of Csa4G023020 vs. Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-26
Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 80  QACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAA 139
           Q     TK  V +    + ++H+RGVR+RPWGKFAAEIRDP ++GSRVWLGT+D+ I+AA
Sbjct: 134 QFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAA 193

Query: 140 KAYDCAAFRLRGRKAILNFPLEAGEPDPPA---AADRKRGRGQKWRNIPKAL 189
           +AYD AAFRLRG KAILNFPLE G+  P A      RKR   +K   + K L
Sbjct: 194 RAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRKRDDDEKVTVVEKVL 245

[Close]

BLAST of Csa4G023020 vs. Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1


Query: 49  PPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRR 108
           PP   +  N   P K+  P+     R      A G       V     + +RH+RGVR R
Sbjct: 89  PPRVTVQSNRKPPLKIAPPN-----RTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMR 148

Query: 109 PWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPP 168
           PWGKFAAEIRDPTR+G+RVWLGT+++ I+AA+AYD  AFRLRG KAILNFPLE  + +P 
Sbjct: 149 PWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPR 208

Query: 169 AAADR 174
           A   R
Sbjct: 209 AEDGR 208

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BLAST of Csa4G023020 vs. TrEMBL
Match: A0A0A0KXM4_CUCSA (DNA binding protein OS=Cucumis sativus GN=Csa_4G023020 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-110
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60
           MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60

Query: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120
           PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP
Sbjct: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120

Query: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180
           TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK
Sbjct: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180

Query: 181 WRNIPKALMATNEK 195
           WRNIPKALMATNEK
Sbjct: 181 WRNIPKALMATNEK 194

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BLAST of Csa4G023020 vs. TrEMBL
Match: A0A0D2P300_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G046100 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 97/186 (52.15%), Postives = 116/186 (62.37%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDF--SDHQTDSPFLHPIKLEDFFFDS---PIPPLPPP---- 60
           M S +E  T++FI Q LLGDF  +D    S      +L+++       P  P+  P    
Sbjct: 1   MTSVEESTTLDFIHQHLLGDFPSADAFISSLDFGLSQLQNYQVPELYQPHSPVSDPNCGI 60

Query: 61  PEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWG 120
           PEI   D KPG V   S      P +       E KV V E      RRH+RGVRRRPWG
Sbjct: 61  PEIFSYDVKPGVVELES------PSVFISGSKVEQKVLVCEE-----RRHYRGVRRRPWG 120

Query: 121 KFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAA 178
           KFAAEIRDPTRKG RVWLGT+D+D+DAAKAYDCAAF++RG+KAILNFPLEAG+  PPA  
Sbjct: 121 KFAAEIRDPTRKGRRVWLGTFDTDVDAAKAYDCAAFKMRGQKAILNFPLEAGQATPPATT 175

[Close]

BLAST of Csa4G023020 vs. TrEMBL
Match: A0A061G087_THECC (Ethylene-responsive element binding factor, putative OS=Theobroma cacao GN=TCM_014850 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-37
Identity = 99/190 (52.11%), Postives = 119/190 (62.63%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQ---TDSPF----LHPI-----KLEDFFFDSPIP-P 60
           M + +E  T+EFI Q LLGDF+      T   F    L PI      + +   DSPI  P
Sbjct: 1   MATIEESTTLEFIRQHLLGDFASADAFITSLDFGLSQLQPIIKPENPIPELEHDSPISDP 60

Query: 61  LPPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRR 120
               P+I   D KP +VVD  +     P         E K+++ E      RRH+RGVRR
Sbjct: 61  NNQIPDIFSCDVKP-EVVDLES-----PRSIISVYNPEPKLSLCEE-----RRHYRGVRR 120

Query: 121 RPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDP 178
           RPWGKFAAEIRDP+RKGSRVWLGT++SD+DAAKAYDCAAF++RG KAILNFPLEAGE  P
Sbjct: 121 RPWGKFAAEIRDPSRKGSRVWLGTFESDVDAAKAYDCAAFKMRGHKAILNFPLEAGEAGP 179

[Close]

BLAST of Csa4G023020 vs. TrEMBL
Match: B9R9Y6_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1501800 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-36
Identity = 96/190 (50.53%), Postives = 118/190 (62.11%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFS---------DHQTDSPFLHPIKLE--DFFFDSPIPPLP 60
           M +S E   +E I+Q+LLGDF          D     P L P+KLE  +    SP P  P
Sbjct: 1   MATSQESSVLELISQYLLGDFPSADIFFCNLDSTLAHPNLRPVKLESDNCPASSPEPKSP 60

Query: 61  PPPEIS-GNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKG-RRHFRGVRR 120
               I   +D KP +VV+P+  P     ++++    ++      A   +  +RH+RGVRR
Sbjct: 61  VSDLIQYAHDAKP-EVVEPT--PPQPLGLASRPINRQSPPPDSNARDDEEEKRHYRGVRR 120

Query: 121 RPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDP 178
           RPWGKFAAEIRDP RKGSRVWLGT+D D+DAAKAYDCAAFR+RGRKAILNFPLEAG  DP
Sbjct: 121 RPWGKFAAEIRDPNRKGSRVWLGTFDRDVDAAKAYDCAAFRMRGRKAILNFPLEAGLADP 180

[Close]

BLAST of Csa4G023020 vs. TrEMBL
Match: G0Z813_9ROSA (ERFAP2-like protein OS=Pyrus x bretschneideri PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 96/195 (49.23%), Postives = 118/195 (60.51%), Query Frame = 1


Query: 9   TIEFITQFLLGDFSDHQTDSPFLH------PIKLE--DFFFDSPIPPLPPP----PEISG 68
           T+E I Q+LLGDF+   TDS   H      P+K E        P  P+  P    P  S 
Sbjct: 23  TLELIRQYLLGDFTF--TDSFISHLNFQFQPVKPEYSSLSESGPSSPISNPNHHSPHFST 82

Query: 69  NDTKPGKVVDPSTLPD-------HRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRP 128
           ++TKP  V  PS   +        R + ++Q  G + ++  V   G    RH+RGVRRRP
Sbjct: 83  SETKPEIVNLPSMEAEPLNLSSPKRKNSTSQNPGPKDELQQVSGPGD-ALRHYRGVRRRP 142

Query: 129 WGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPA 185
           WGKFAAEIRDP RKG+RVWLGT+D+D+DAAKAYDCAAF+LRGRKAILNFPLEAG  +PP 
Sbjct: 143 WGKFAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLEAGVSEPPV 202

[Close]

BLAST of Csa4G023020 vs. TAIR10
Match: AT5G07580.1 (AT5G07580.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-33
Identity = 79/189 (41.80%), Postives = 111/189 (58.73%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDF-------SDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPE 60
           M S +E   +E I   LL D         D   D+ F+  +    +  +  +P   P   
Sbjct: 68  MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGL----WCIEPHVPKQEPDSP 127

Query: 61  ISGNDTKPGKV--VDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGR---RHFRGVRRR 120
           +   D+   +   V+  +     P++++ +   ET  +V +A   +     RH+RGVRRR
Sbjct: 128 VLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRR 187

Query: 121 PWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPP 178
           PWGKFAAEIRDP +KGSR+WLGT++SD+DAA+AYDCAAF+LRGRKA+LNFPL+AG+ + P
Sbjct: 188 PWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAP 247

[Close]

BLAST of Csa4G023020 vs. TAIR10
Match: AT5G61590.1 (AT5G61590.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-32
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 36  LEDFFFDSP--------IPPLPPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETK 95
           +EDF FD          + P  P P++  +      V+DP +       M  ++  + + 
Sbjct: 28  IEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSP----VLDPDSYVQEILQMEAESSSSSST 87

Query: 96  VAVVEASGGKGR---------RHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDA 155
               E      R         RH+RGVRRRPWGKFAAEIRDP +KGSR+WLGT++SDIDA
Sbjct: 88  TTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDA 147

Query: 156 AKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGR 178
           A+AYD AAF+LRGRKA+LNFPL+AG+ D P  + RKR R
Sbjct: 148 ARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

[Close]

BLAST of Csa4G023020 vs. TAIR10
Match: AT5G61600.1 (AT5G61600.1 ethylene response factor 104)

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-32
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60
           M +  E L I+FI+Q LL DF   +TD P L   +L +F  ++       P  I+    K
Sbjct: 1   MATKQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETG------PRTITNQSPK 60

Query: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120
           P      STL   +P +   +    ++    +    +  RH+RGVRRRPWGK+AAEIRDP
Sbjct: 61  PN-----STLNQRKPPLPNLSV---SRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDP 120

Query: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180
            +KG R+WLGTYD+ ++A +AYD AAF+LRGRKAILNFPL+        + +   G G++
Sbjct: 121 NKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKR 169

Query: 181 WRN 184
            R+
Sbjct: 181 KRD 169

[Close]

BLAST of Csa4G023020 vs. TAIR10
Match: AT5G47230.1 (AT5G47230.1 ethylene responsive element binding factor 5)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 80  QACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAA 139
           Q     TK  V +    + ++H+RGVR+RPWGKFAAEIRDP ++GSRVWLGT+D+ I+AA
Sbjct: 134 QFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAA 193

Query: 140 KAYDCAAFRLRGRKAILNFPLEAGEPDPPA---AADRKRGRGQKWRNIPKAL 189
           +AYD AAFRLRG KAILNFPLE G+  P A      RKR   +K   + K L
Sbjct: 194 RAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRKRDDDEKVTVVEKVL 245

[Close]

BLAST of Csa4G023020 vs. TAIR10
Match: AT4G17490.1 (AT4G17490.1 ethylene responsive element binding factor 6)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1


Query: 49  PPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRR 108
           PP   +  N   P K+  P+     R      A G       V     + +RH+RGVR R
Sbjct: 89  PPRVTVQSNRKPPLKIAPPN-----RTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMR 148

Query: 109 PWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPP 168
           PWGKFAAEIRDPTR+G+RVWLGT+++ I+AA+AYD  AFRLRG KAILNFPLE  + +P 
Sbjct: 149 PWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPR 208

Query: 169 AAADR 174
           A   R
Sbjct: 209 AEDGR 208

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BLAST of Csa4G023020 vs. NCBI nr
Match: gi|449458407|ref|XP_004146939.1| (PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 2.2e-110
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60
           MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQTDSPFLHPIKLEDFFFDSPIPPLPPPPEISGNDTK 60

Query: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120
           PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP
Sbjct: 61  PGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWGKFAAEIRDP 120

Query: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180
           TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK
Sbjct: 121 TRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAADRKRGRGQK 180

Query: 181 WRNIPKALMATNEK 195
           WRNIPKALMATNEK
Sbjct: 181 WRNIPKALMATNEK 194

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BLAST of Csa4G023020 vs. NCBI nr
Match: gi|659107812|ref|XP_008453871.1| (PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 185/202 (91.58%), Postives = 186/202 (92.08%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQT----DSPFLHPIKLEDFFFDSPIPPLPPPPEISG 60
           MDSSDEFLTIEFITQFLLGDFSDHQT    DSPFLHPIKLEDFFFDSPIPPLPPPPEIS 
Sbjct: 1   MDSSDEFLTIEFITQFLLGDFSDHQTHFPTDSPFLHPIKLEDFFFDSPIPPLPPPPEISD 60

Query: 61  NDTK-PGKVVDPSTLPDHRPDMSTQACGAE--TKVAVVEASGGK-GRRHFRGVRRRPWGK 120
           NDTK PGKVVD ST PD  PDMSTQACGAE   KV+VVEASGGK GRRHFRGVRRRPWGK
Sbjct: 61  NDTKKPGKVVDQSTTPD--PDMSTQACGAELAAKVSVVEASGGKAGRRHFRGVRRRPWGK 120

Query: 121 FAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAAD 180
           FAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPP AAD
Sbjct: 121 FAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPTAAD 180

Query: 181 RKRGRGQKWRNIPKALMATNEK 195
           RKRGRGQKWRNI KALMATNEK
Sbjct: 181 RKRGRGQKWRNISKALMATNEK 200

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BLAST of Csa4G023020 vs. NCBI nr
Match: gi|823184047|ref|XP_012489066.1| (PREDICTED: ethylene-responsive transcription factor ERF107-like [Gossypium raimondii])

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 97/186 (52.15%), Postives = 116/186 (62.37%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDF--SDHQTDSPFLHPIKLEDFFFDS---PIPPLPPP---- 60
           M S +E  T++FI Q LLGDF  +D    S      +L+++       P  P+  P    
Sbjct: 1   MTSVEESTTLDFIHQHLLGDFPSADAFISSLDFGLSQLQNYQVPELYQPHSPVSDPNCGI 60

Query: 61  PEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRRRPWG 120
           PEI   D KPG V   S      P +       E KV V E      RRH+RGVRRRPWG
Sbjct: 61  PEIFSYDVKPGVVELES------PSVFISGSKVEQKVLVCEE-----RRHYRGVRRRPWG 120

Query: 121 KFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDPPAAA 178
           KFAAEIRDPTRKG RVWLGT+D+D+DAAKAYDCAAF++RG+KAILNFPLEAG+  PPA  
Sbjct: 121 KFAAEIRDPTRKGRRVWLGTFDTDVDAAKAYDCAAFKMRGQKAILNFPLEAGQATPPATT 175

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BLAST of Csa4G023020 vs. NCBI nr
Match: gi|590671234|ref|XP_007038277.1| (Ethylene-responsive element binding factor, putative [Theobroma cacao])

HSP 1 Score: 162.2 bits (409), Expect = 9.4e-37
Identity = 99/190 (52.11%), Postives = 119/190 (62.63%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDFSDHQ---TDSPF----LHPI-----KLEDFFFDSPIP-P 60
           M + +E  T+EFI Q LLGDF+      T   F    L PI      + +   DSPI  P
Sbjct: 1   MATIEESTTLEFIRQHLLGDFASADAFITSLDFGLSQLQPIIKPENPIPELEHDSPISDP 60

Query: 61  LPPPPEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGKGRRHFRGVRR 120
               P+I   D KP +VVD  +     P         E K+++ E      RRH+RGVRR
Sbjct: 61  NNQIPDIFSCDVKP-EVVDLES-----PRSIISVYNPEPKLSLCEE-----RRHYRGVRR 120

Query: 121 RPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRGRKAILNFPLEAGEPDP 178
           RPWGKFAAEIRDP+RKGSRVWLGT++SD+DAAKAYDCAAF++RG KAILNFPLEAGE  P
Sbjct: 121 RPWGKFAAEIRDPSRKGSRVWLGTFESDVDAAKAYDCAAFKMRGHKAILNFPLEAGEAGP 179

[Close]

BLAST of Csa4G023020 vs. NCBI nr
Match: gi|747105657|ref|XP_011101099.1| (PREDICTED: ethylene-responsive transcription factor ERF107-like [Sesamum indicum])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 95/206 (46.12%), Postives = 116/206 (56.31%), Query Frame = 1


Query: 1   MDSSDEFLTIEFITQFLLGDF---------------SDHQTDSPFLHPIKLEDFFFDSPI 60
           M++SDE LT+EFI   LL DF               SD   D P   P +LE      P 
Sbjct: 1   METSDESLTLEFIRHHLLEDFTSADSFFDNLTTLCFSDVYGDKPIWSPGELESPSSSGPT 60

Query: 61  PPLPPP--------PEISGNDTKPGKVVDPSTLPDHRPDMSTQACGAETKVAVVEASGGK 120
           P    P        P++   +TKP   +  +   D      +     + +    E   G 
Sbjct: 61  PLPDSPISQYFAFSPDLFEFETKPQISMSTTDTQDDPSFPESPEAPVKAEPEFTELVTGS 120

Query: 121 G------RRHFRGVRRRPWGKFAAEIRDPTRKGSRVWLGTYDSDIDAAKAYDCAAFRLRG 178
           G       RH+RGVRRRPWGK+AAEIRDPTRKGSRVWLGTYD+D+DAA+AYDCAAF++RG
Sbjct: 121 GVTLLAAGRHYRGVRRRPWGKYAAEIRDPTRKGSRVWLGTYDTDVDAARAYDCAAFKMRG 180

The following BLAST results are available for this feature:

BLAST of Csa4G023020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF106_ARATH	9.1e-32	41.80	Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF107_ARATH	4.5e-31	45.91	Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF104_ARATH	1.0e-30	40.98	Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF102_ARATH	3.4e-26	55.36	Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 ...	[more]
EF103_ARATH	2.8e-25	49.60	Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 ...	[more]

BLAST of Csa4G023020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM4_CUCSA	1.5e-110	100.00	DNA binding protein OS=Cucumis sativus GN=Csa_4G023020 PE=4 SV=1	[more]
A0A0D2P300_GOSRA	1.3e-37	52.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G046100 PE=4 SV=1	[more]
A0A061G087_THECC	6.6e-37	52.11	Ethylene-responsive element binding factor, putative OS=Theobroma cacao GN=TCM_0...	[more]
B9R9Y6_RICCO	2.5e-36	50.53	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1501800 PE=4 SV=1	[more]
G0Z813_9ROSA	3.3e-36	49.23	ERFAP2-like protein OS=Pyrus x bretschneideri PE=2 SV=1	[more]

BLAST of Csa4G023020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07580.1	5.1e-33	41.80	Integrase-type DNA-binding superfamily protein	[more]
AT5G61590.1	2.6e-32	45.91	Integrase-type DNA-binding superfamily protein	[more]
AT5G61600.1	5.7e-32	40.98	ethylene response factor 104	[more]
AT5G47230.1	1.9e-27	55.36	ethylene responsive element binding factor 5	[more]
AT4G17490.1	1.6e-26	49.60	ethylene responsive element binding factor 6	[more]

BLAST of Csa4G023020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458407\|ref\|XP_004146939.1\|	2.2e-110	100.00	PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis sativus]	[more]
gi\|659107812\|ref\|XP_008453871.1\|	1.1e-96	91.58	PREDICTED: ethylene-responsive transcription factor ERF106 [Cucumis melo]	[more]
gi\|823184047\|ref\|XP_012489066.1\|	1.9e-37	52.15	PREDICTED: ethylene-responsive transcription factor ERF107-like [Gossypium raimo...	[more]
gi\|590671234\|ref\|XP_007038277.1\|	9.4e-37	52.11	Ethylene-responsive element binding factor, putative [Theobroma cacao]	[more]
gi\|747105657\|ref\|XP_011101099.1\|	1.2e-36	46.12	PREDICTED: ethylene-responsive transcription factor ERF107-like [Sesamum indicum...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU129029	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G023020.1	Csa4G023020.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU129029	CU129029	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 141..161 score: 1.2E-12coord: 102..113 score: 1.2
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 100..160 score: 7.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 101..151 score: 2.0
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 101..165 score: 3.0
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 101..159 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 101..161 score: 2.09
None	No IPR available	PANTHER	PTHR31677	FAMILY NOT NAMED	coord: 99..169 score: 5.4
None	No IPR available	PANTHER	PTHR31677:SF24	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF106	coord: 99..169 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G023020	Cla010713	Watermelon (97103) v1	cuwmB312
Csa4G023020	MELO3C017645	Melon (DHL92) v3.5.1	cumeB312
Csa4G023020	ClCG07G016980	Watermelon (Charleston Gray)	cuwcgB319
Csa4G023020	ClCG01G004700	Watermelon (Charleston Gray)	cuwcgB287
Csa4G023020	Lsi07G001160	Bottle gourd (USVL1VR-Ls)	culsiB303
Csa4G023020	MELO3C017645.2	Melon (DHL92) v3.6.1	cumedB297
Csa4G023020	Cla97C01G004910	Watermelon (97103) v2	cuwmbB267
Csa4G023020	Cla97C07G144030	Watermelon (97103) v2	cuwmbB316
Csa4G023020	Bhi01G002006	Wax gourd	cuwgoB376
Csa4G023020	CSPI04G04150	Wild cucumber (PI 183967)	cpicuB182
Csa4G023020	Cucsa.094100	Cucumber (Gy14) v1	cgycuB102
Csa4G023020	CmaCh04G003610	Cucurbita maxima (Rimu)	cmacuB710
Csa4G023020	CmaCh16G002180	Cucurbita maxima (Rimu)	cmacuB332
Csa4G023020	CmoCh04G003790	Cucurbita moschata (Rifu)	cmocuB700
Csa4G023020	CmoCh16G002360	Cucurbita moschata (Rifu)	cmocuB321
Csa4G023020	Cp4.1LG01g03420	Cucurbita pepo (Zucchini)	cpecuB401
Csa4G023020	CsGy4G004060	Cucumber (Gy14) v2	cgybcuB165
Csa4G023020	Carg16760	Silver-seed gourd	carcuB0886
Csa4G023020	Carg08035	Silver-seed gourd	carcuB0403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G023020	Cucurbita pepo (Zucchini)	cpecuB218