CmoCh13G008920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G008920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	Cmo_Chr13 : 8008130 .. 8008522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAAAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGTGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

mRNA sequence

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAAAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGTGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Coding sequence (CDS)

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAAAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGTGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Homology

[Close]

BLAST of CmoCh13G008920 vs. TrEMBL
Match: A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-49
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 1


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREAD-GGGRNQRKQRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA+ GGGR+QRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 131
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of CmoCh13G008920 vs. TrEMBL
Match: A0A151TT50_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.7e-31
Identity = 79/132 (59.85%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK +P V  E  HLE+LKAVAQAW +H+GTSKP SEFDAHRRN R  PSRFKLEA+    
Sbjct: 1   MKKRPEVRHEPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALNKPP 60

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQR-ESCNSLR 120
           +      WDF  SLWDSYE+V VS+++ETGL LD + F +  G    QRK + ES NSLR
Sbjct: 61  TSSKNTYWDFQHSLWDSYELVTVSRRIETGLALD-NPFDQLCGSAPIQRKPKPESKNSLR 120

Query: 121 NLFN-RTSRRFN 131
           NLFN  +SRRFN
Sbjct: 121 NLFNLMSSRRFN 131

[Close]

BLAST of CmoCh13G008920 vs. TrEMBL
Match: M5WLX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 81/136 (59.56%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRAN-PSRFKLEAIRSR 60
           MK K   ED D  LEILKAVAQAW SH+  S+P SEFDAHRRN     PSRFKLEA+R  
Sbjct: 1   MKKKLQPED-DRELEILKAVAQAWYSHSSGSRPTSEFDAHRRNFTGRLPSRFKLEAMRKS 60

Query: 61  SSVG----GMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESC 120
           +S      G   WDFGQSLWD+YEIVAVSK+LETGL +D + F + D   R  R++RES 
Sbjct: 61  TSASNQASGYAAWDFGQSLWDAYEIVAVSKRLETGLFVDENPFNKLDSPTRVIRRRRESK 120

Query: 121 NSLRNLFNR-TSRRFN 131
           +SLR+LF++ +SRRFN
Sbjct: 121 HSLRSLFDKMSSRRFN 135

[Close]

BLAST of CmoCh13G008920 vs. TrEMBL
Match: V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-29
Identity = 80/138 (57.97%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK K  +ED+D  LEILKAVAQAW  H+G S+P +EFDAHRRN ++ PSRF+LEA+   S
Sbjct: 1   MKKKLELEDDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMNKSS 60

Query: 61  SVGGMR------RWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRES 120
           S            WDFGQSLWDSYE+V VSKKLE GL LD + F   D      R++RES
Sbjct: 61  SSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRRRES 120

Query: 121 -CNSLRNLFNR-TSRRFN 131
             NSLRNLFNR +SRRF+
Sbjct: 121 KKNSLRNLFNRFSSRRFH 137

[Close]

BLAST of CmoCh13G008920 vs. TrEMBL
Match: B9RAU1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508640 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-28
Identity = 75/131 (57.25%), Postives = 94/131 (71.76%), Query Frame = 1


Query: 8   EDEDGH-LEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRS------RS 67
           E ED H LEILKAVAQAW  H+G+S+PA+E+DA+RRN +  PSRFK+EA+        R 
Sbjct: 9   EPEDEHQLEILKAVAQAWHGHSGSSRPANEYDAYRRNFQTKPSRFKIEAMNKSLSLTKRV 68

Query: 68  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSLRN 127
           +     +WDF QSL DSYEIV+++K+LE G+VLD D F   D   R +R+ RES NSLRN
Sbjct: 69  ACSDSGKWDFKQSLLDSYEIVSMAKRLERGMVLDDDPFSGLDNQSRVRRRPRESKNSLRN 128

Query: 128 LFNR-TSRRFN 131
           LFNR +SRRFN
Sbjct: 129 LFNRLSSRRFN 139

[Close]

BLAST of CmoCh13G008920 vs. TAIR10
Match: AT4G24700.1 (AT4G24700.1 unknown protein)

HSP 1 Score: 97.4 bits (241), Expect = 6.7e-21
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 2   KNKPVVEDEDGHLEILKAVAQAWQSHTGTSK-PASEFDAHRRNC--RANPSRFKLEAIRS 61
           +N+   E++   LE++KA AQAW SH+ TSK    EFDA R++   +   SRFK EA+ +
Sbjct: 10  ENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSA 69

Query: 62  RSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGG---RNQRKQRESC 121
           +     +  W+FGQSLWD YEI++VSKKLE  L L+   F  +D  G     ++K R+S 
Sbjct: 70  KHHPSFLD-WEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDSR 129

Query: 122 NSLRNLFNRTSRR 129
           NSLR+LF R+S +
Sbjct: 130 NSLRSLFTRSSSK 141

[Close]

BLAST of CmoCh13G008920 vs. NCBI nr
Match: gi|778657893|ref|XP_011651756.1| (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 7.2e-49
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 1


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREAD-GGGRNQRKQRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA+ GGGR+QRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 131
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of CmoCh13G008920 vs. NCBI nr
Match: gi|659067325|ref|XP_008438871.1| (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-48
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 1


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREAD-GGGRNQRKQRESCN 120
           SR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA+ GGGR+QRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 131
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of CmoCh13G008920 vs. NCBI nr
Match: gi|694370157|ref|XP_009362938.1| (PREDICTED: uncharacterized protein LOC103952950 [Pyrus x bretschneideri])

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-31
Identity = 82/136 (60.29%), Postives = 98/136 (72.06%), Query Frame = 1


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRA-NPSRFKLEAIRSR 60
           MK K  +ED D  LEI+KAVAQAW SH+G S+P SEFDAHRRN +  +PSRFKLEA+R  
Sbjct: 1   MKQKLQLEDVDRELEIIKAVAQAWYSHSGNSRPMSEFDAHRRNYKGKSPSRFKLEAMRKS 60

Query: 61  SSV----GGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESC 120
           SS      G  +WDFGQSLWD+YEIVAVSK+LETGLVLD     E +   R  R++RES 
Sbjct: 61  SSASAHQSGYEKWDFGQSLWDAYEIVAVSKRLETGLVLD-----ELESSARVHRRRRESK 120

Query: 121 NSLRNLFNRT-SRRFN 131
           +SLR+ FN   SRRF+
Sbjct: 121 HSLRSFFNTMFSRRFD 131

[Close]

BLAST of CmoCh13G008920 vs. NCBI nr
Match: gi|1012359033|gb|KYP70217.1| (hypothetical protein KK1_009428 [Cajanus cajan])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 79/132 (59.85%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK +P V  E  HLE+LKAVAQAW +H+GTSKP SEFDAHRRN R  PSRFKLEA+    
Sbjct: 1   MKKRPEVRHEPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALNKPP 60

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQR-ESCNSLR 120
           +      WDF  SLWDSYE+V VS+++ETGL LD + F +  G    QRK + ES NSLR
Sbjct: 61  TSSKNTYWDFQHSLWDSYELVTVSRRIETGLALD-NPFDQLCGSAPIQRKPKPESKNSLR 120

Query: 121 NLFN-RTSRRFN 131
           NLFN  +SRRFN
Sbjct: 121 NLFNLMSSRRFN 131

[Close]

BLAST of CmoCh13G008920 vs. NCBI nr
Match: gi|1009175864|ref|XP_015869119.1| (PREDICTED: uncharacterized protein LOC107406504 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-30
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 8   EDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSV--GGM 67
           +++   +EILKAVAQAW SH+G+S+P +EFDAHRRN    PSRFK+EA+  R++   G  
Sbjct: 11  DEQQKQVEILKAVAQAWHSHSGSSRPMNEFDAHRRNFNGKPSRFKIEAMGKRAAERNGSC 70

Query: 68  RRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSLRNLFNR- 127
             WDF QSLWDSYEIV +SK+LE GLV D   F EAD   R  RK++ES NSLR+LFN+ 
Sbjct: 71  GTWDFKQSLWDSYEIVTMSKRLEAGLVFDNIPFTEADAHVRVHRKRKESKNSLRSLFNQM 130

Query: 128 TSRRFN 131
           +SRRFN
Sbjct: 131 SSRRFN 136

The following BLAST results are available for this feature:

BLAST of CmoCh13G008920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G008920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM3_CUCSA	5.0e-49	79.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1	[more]
A0A151TT50_CAJCA	4.7e-31	59.85	Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1	[more]
M5WLX8_PRUPE	1.5e-29	59.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1	[more]
V4TNE3_9ROSI	3.4e-29	57.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1	[more]
B9RAU1_RICCO	1.7e-28	57.25	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508640 PE=4 SV=1	[more]

BLAST of CmoCh13G008920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24700.1	6.7e-21	44.36	unknown protein	[more]

BLAST of CmoCh13G008920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657893\|ref\|XP_011651756.1\|	7.2e-49	79.26	PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
gi\|659067325\|ref\|XP_008438871.1\|	2.7e-48	78.52	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]	[more]
gi\|694370157\|ref\|XP_009362938.1\|	2.3e-31	60.29	PREDICTED: uncharacterized protein LOC103952950 [Pyrus x bretschneideri]	[more]
gi\|1012359033\|gb\|KYP70217.1\|	6.7e-31	59.85	hypothetical protein KK1_009428 [Cajanus cajan]	[more]
gi\|1009175864\|ref\|XP_015869119.1\|	5.7e-30	58.73	PREDICTED: uncharacterized protein LOC107406504 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G008920.1	CmoCh13G008920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 8..130 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G008920	Cucsa.098770	Cucumber (Gy14) v1	cgycmoB0203
CmoCh13G008920	CmaCh13G008610	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G008920	Csa1G046880	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G008920	MELO3C002298	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G008920	CSPI01G08810	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G008920	Lsi02G004130	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G008920	Cp4.1LG20g02560	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G008920	Cp4.1LG09g09950	Cucurbita pepo (Zucchini)	cmocpeB183
CmoCh13G008920	MELO3C002298.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G008920	CsaV3_1G008840	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G008920	Bhi08G001347	Wax gourd	cmowgoB0260
CmoCh13G008920	CsGy1G008750	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G008920	Carg06751	Silver-seed gourd	carcmoB0671
CmoCh13G008920	Carg07654	Silver-seed gourd	carcmoB1349

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G008920	CmoCh18G001530	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G008920	Cucumber (Gy14) v2	cgybcmoB058
CmoCh13G008920	Melon (DHL92) v3.6.1	cmomedB206
CmoCh13G008920	Cucumber (Chinese Long) v3	cmocucB0222
CmoCh13G008920	Watermelon (97103) v2	cmowmbB211
CmoCh13G008920	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G008920	Melon (DHL92) v3.5.1	cmomeB183
CmoCh13G008920	Bottle gourd (USVL1VR-Ls)	cmolsiB192