CsaV3_1G008840 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G008840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Locationchr1 : 5512412 .. 5513088 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAACAACGGAGAATTGAATTGGTGATCATAAACGAATGATCTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTTAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGAAGAAACCCCCAAATTTGAGGTTGTCATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCCCACATACACACACACACGCGCACACATTATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

mRNA sequence

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Protein sequence

MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_011651756.1 (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus] >KGN64344.1 hypothetical protein Csa_1G046880 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 8.2e-59
Identity = 122/136 (89.71%), Postives = 122/136 (89.71%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 2.5e-55
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39
Identity = 95/134 (70.90%), Postives = 103/134 (76.87%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES-------------GGGRSQRKRRESCNS 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE+             GGGR+QRK+RESCNS
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNS 143

Query: 121 LRNLFNRASSRRFN 122
           LRNLFNR +SRRFN
Sbjct: 144 LRNLFNR-TSRRFN 153

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_023519325.1 (uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39
Identity = 95/134 (70.90%), Postives = 103/134 (76.87%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLE-------------SGGGRSQRKRRESCNS 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE             +GGGR+QRK+RESCNS
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNS 143

Query: 121 LRNLFNRASSRRFN 122
           LRNLFNR +SRRFN
Sbjct: 144 LRNLFNR-TSRRFN 153

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 5.5e-39
Identity = 91/125 (72.80%), Postives = 99/125 (79.20%), Query Frame = 0

Query: 10  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDR 69
           + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    R
Sbjct: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66

Query: 70  RWDFAQSLWDSYEIVTVSKKLES-------------GGGRSQRKRRESCNSLRNLFNRAS 122
           RWDF QSLWDSYEIV VSKKLE+             GGGR+QRK+RESCNSLRNLFNR +
Sbjct: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRNLFNR-T 126

BLAST of CsaV3_1G008840 vs. TAIR10
Match: AT4G24700.1 (unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 21  KAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPSRFKIEAIRSRTSTVSDRRWDFAQSL 80
           KA AQAW SH+ TSK    EFDA R+++  +   SRFK EA+ ++    S   W+F QSL
Sbjct: 26  KAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSAKHHP-SFLDWEFGQSL 85

Query: 81  WDSYEIVTVSKKLE----------SGGGRSQRKR------RESCNSLRNLFNRASSRRF 121
           WD YEI++VSKKLE          S       K+          NSLR+LF R+SS+RF
Sbjct: 86  WDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMXXXXXXXXXNSLRSLFTRSSSKRF 143

BLAST of CsaV3_1G008840 vs. TrEMBL
Match: tr|A0A0A0LTM3|A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.4e-59
Identity = 122/136 (89.71%), Postives = 122/136 (89.71%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsaV3_1G008840 vs. TrEMBL
Match: tr|A0A1S3AX17|A0A1S3AX17_CUCME (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsaV3_1G008840 vs. TrEMBL
Match: tr|V4TNE3|V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 78/140 (55.71%), Postives = 94/140 (67.14%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK    +L DDD  LEILKAVAQAW+ H+G S+P +EFDAHRRN +  PSRF++EA+ 
Sbjct: 1   MKKK---LELEDDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMN 60

Query: 61  SRTST------VSDRRWDFAQSLWDSYEIVTVSKKLESGGGRS------------QRKRR 120
             +S+      +S   WDF QSLWDSYE+VTVSKKLE+G                 R+RR
Sbjct: 61  KSSSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLDNPFSGLDDTVPVHRRRR 120

Query: 121 ES-CNSLRNLFNRASSRRFN 122
           ES  NSLRNLFNR SSRRF+
Sbjct: 121 ESKKNSLRNLFNRFSSRRFH 137

BLAST of CsaV3_1G008840 vs. TrEMBL
Match: tr|A0A151TT50|A0A151TT50_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009428 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKK+P++     + +HLE+LKAVAQAW++H+GTSKP SEFDAHRRN R  PSRFK+EA+ 
Sbjct: 1   MKKRPEVRH---EPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALN 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES------------GGGRSQRK-RRESCNS 120
              ++  +  WDF  SLWDSYE+VTVS+++E+            G    QRK + ES NS
Sbjct: 61  KPPTSSKNTYWDFQHSLWDSYELVTVSRRIETGLALDNPFDQLCGSAPIQRKPKPESKNS 120

Query: 121 LRNLFNRASSRRFN 122
           LRNLFN  SSRRFN
Sbjct: 121 LRNLFNLMSSRRFN 131

BLAST of CsaV3_1G008840 vs. TrEMBL
Match: tr|K4BK73|K4BK73_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.4e-27
Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK + HQ  D++  +EILKAVAQAWH H+ +    +EFDAHR N +  PSRFK+EA+ 
Sbjct: 600 MKKKQEPHQ--DEEHDVEILKAVAQAWHGHSSSRGTTAEFDAHRHNFKNKPSRFKLEAMN 659

Query: 61  SRTSTVSD---RRWDFAQSLWDSYEIVTVSKKLES---------GGGRSQRKRRESCNSL 120
             TS   D    RWDF+QSLWDSYEI+ VSKKLE+         G  R  +KR+ES NSL
Sbjct: 660 KATSREYDGTISRWDFSQSLWDSYEILNVSKKLETGLMLDHPLDGSIRIGQKRKESKNSL 719

Query: 121 RNLFNRASSRRFN 122
           RNL NR SSRR+N
Sbjct: 720 RNLLNRVSSRRYN 730

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011651756.18.2e-5989.71PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus] >KGN64344.1 hy... [more]
XP_008438871.12.5e-5584.56PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo][more]
XP_022923731.13.3e-3970.90uncharacterized protein LOC111431350 [Cucurbita moschata][more]
XP_023519325.13.3e-3970.90uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo][more]
XP_023001654.15.5e-3972.80uncharacterized protein LOC111495727 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT4G24700.12.4e-1243.70unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LTM3|A0A0A0LTM3_CUCSA5.4e-5989.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1[more]
tr|A0A1S3AX17|A0A1S3AX17_CUCME1.6e-5584.56uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=... [more]
tr|V4TNE3|V4TNE3_9ROSI1.1e-2755.71Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022689mg PE=4 ... [more]
tr|A0A151TT50|A0A151TT50_CAJCA1.1e-2754.48Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009428 PE=4 SV=1[more]
tr|K4BK73|K4BK73_SOLLC9.4e-2755.64Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008840.1CsaV3_1G008840.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..49
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 4..98

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G008840Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G008840Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G008840Silver-seed gourdcarcucB0655
CsaV3_1G008840Cucumber (Gy14) v2cgybcucB009
CsaV3_1G008840Cucumber (Gy14) v1cgycucB316
CsaV3_1G008840Cucumber (Gy14) v1cgycucB595
CsaV3_1G008840Cucurbita maxima (Rimu)cmacucB0074
CsaV3_1G008840Cucurbita maxima (Rimu)cmacucB0121
CsaV3_1G008840Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G008840Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G008840Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G008840Cucurbita moschata (Rifu)cmocucB0061
CsaV3_1G008840Cucurbita moschata (Rifu)cmocucB0105
CsaV3_1G008840Cucurbita pepo (Zucchini)cpecucB0435
CsaV3_1G008840Cucurbita pepo (Zucchini)cpecucB0801
CsaV3_1G008840Wild cucumber (PI 183967)cpicucB013
CsaV3_1G008840Wild cucumber (PI 183967)cpicucB074
CsaV3_1G008840Bottle gourd (USVL1VR-Ls)cuclsiB057
CsaV3_1G008840Bottle gourd (USVL1VR-Ls)cuclsiB075
CsaV3_1G008840Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G008840Melon (DHL92) v3.5.1cucmeB047
CsaV3_1G008840Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G008840Melon (DHL92) v3.6.1cucmedB044
CsaV3_1G008840Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G008840Watermelon (Charleston Gray)cucwcgB067
CsaV3_1G008840Watermelon (Charleston Gray)cucwcgB079
CsaV3_1G008840Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G008840Watermelon (97103) v1cucwmB013
CsaV3_1G008840Watermelon (97103) v1cucwmB041
CsaV3_1G008840Watermelon (97103) v2cucwmbB068
CsaV3_1G008840Watermelon (97103) v2cucwmbB056
CsaV3_1G008840Watermelon (97103) v2cucwmbB088
CsaV3_1G008840Wax gourdcucwgoB073