CSPI01G08810 (gene) Wild cucumber (PI 183967)

NameCSPI01G08810
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
LocationChr1 : 5524597 .. 5525372 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAATTGGTGATCATAAACGAATGATCTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTTAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGAAGAAACCCCCAAATTTGAGGTTGTCATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCCCACATACACACACACACGCACACACATTATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGAAGATTCAATTATTAGGGATTTCAAGTTCGAATTCGAACCGATGAATTGAATTTGAAACTTTGTTCATTATCAATTTTTGAAACCCAGAGGTCTTGTTTTTTTCTTTTTTCTTTTTCTTCTTTCTTAAG

mRNA sequence

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGAAGATTCAATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGAAGATTCAATTATTAG
BLAST of CSPI01G08810 vs. TrEMBL
Match: A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CSPI01G08810 vs. TrEMBL
Match: V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK +L    DDD  LEILKAVAQAW+ H+G S+P +EFDAHRRN +  PSRF++EA+ 
Sbjct: 1   MKKKLELE---DDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMN 60

Query: 61  SRTST------VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRK 120
             +S+      +S   WDF QSLWDSYE+VTVSKKLEAGL LD + F   +      +R+
Sbjct: 61  KSSSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRR 120

Query: 121 RRESCNSLRNLFNRASSRRFN 136
           R    NSLRNLFNR SSRRF+
Sbjct: 121 RESKKNSLRNLFNRFSSRRFH 137

BLAST of CSPI01G08810 vs. TrEMBL
Match: A0A151TT50_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-30
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKK+P++     + +HLE+LKAVAQAW++H+GTSKP SEFDAHRRN R  PSRFK+EA+ 
Sbjct: 1   MKKRPEVRH---EPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALN 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
              ++  +  WDF  SLWDSYE+VTVS+++E GL LD + F +        ++ + ES N
Sbjct: 61  KPPTSSKNTYWDFQHSLWDSYELVTVSRRIETGLALD-NPFDQLCGSAPIQRKPKPESKN 120

Query: 121 SLRNLFNRASSRRFN 136
           SLRNLFN  SSRRFN
Sbjct: 121 SLRNLFNLMSSRRFN 131

BLAST of CSPI01G08810 vs. TrEMBL
Match: K7KMT6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G041700 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-30
Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKK+P+L Q  D     E+LKAVAQAW+SH+GT KP SEF+AHRRN R  PSRFK+EA+ 
Sbjct: 1   MKKRPELQQHQD----FEVLKAVAQAWYSHSGTCKPMSEFEAHRRNFRGKPSRFKLEALN 60

Query: 61  SRTSTVSDRR-----WDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKR 120
              ++ S  R     WDF QSLWDSYE+VTVS+++E GL LD + F E        Q+++
Sbjct: 61  KPQASSSSSRDTSTYWDFQQSLWDSYELVTVSRRIETGLTLD-NPFDELCGSPPIQQKRK 120

Query: 121 RESCNSLRNLFNRASSRRFN 136
            ES NSLRNLFN  SSRRFN
Sbjct: 121 PESKNSLRNLFNLMSSRRFN 135

BLAST of CSPI01G08810 vs. TrEMBL
Match: A0A0B2RRC5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016685 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-30
Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKK+P+L Q  D     E+LKAVAQAW+SH+GT KP SEF+AHRRN R  PSRFK+EA+ 
Sbjct: 1   MKKRPELQQHQD----FEVLKAVAQAWYSHSGTCKPMSEFEAHRRNFRGKPSRFKLEALN 60

Query: 61  SRTSTVSDRR-----WDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKR 120
              ++ S  R     WDF QSLWDSYE+VTVS+++E GL LD + F E        Q+++
Sbjct: 61  KPQASSSSSRDTSTYWDFQQSLWDSYELVTVSRRIETGLTLD-NPFDELCGSPPIQQKRK 120

Query: 121 RESCNSLRNLFNRASSRRFN 136
            ES NSLRNLFN  SSRRFN
Sbjct: 121 PESKNSLRNLFNLMSSRRFN 135

BLAST of CSPI01G08810 vs. TAIR10
Match: AT4G24700.1 (AT4G24700.1 unknown protein)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-20
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPS 60
           M+KK +    ++++     + LE++KA AQAW SH+ TSK    EFDA R+++  +   S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQ 120
           RFK EA+ ++    S   W+F QSLWD YEI++VSKKLE  L L+   F  +++ G +  
Sbjct: 61  RFKTEALSAKHHP-SFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKM 120

Query: 121 RKR--RESCNSLRNLFNRASSRRF 135
           +K+  R+S NSLR+LF R+SS+RF
Sbjct: 121 KKKKTRDSRNSLRSLFTRSSSKRF 143

BLAST of CSPI01G08810 vs. NCBI nr
Match: gi|778657893|ref|XP_011651756.1| (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 4.5e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CSPI01G08810 vs. NCBI nr
Match: gi|659067325|ref|XP_008438871.1| (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CSPI01G08810 vs. NCBI nr
Match: gi|1009175864|ref|XP_015869119.1| (PREDICTED: uncharacterized protein LOC107406504 [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 4.9e-32
Identity = 83/137 (60.58%), Postives = 100/137 (72.99%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK    +  +  + +EILKAVAQAWHSH+G+S+P +EFDAHRRN    PSRFKIEA+ 
Sbjct: 1   MKKKAGQLEGDEQQKQVEILKAVAQAWHSHSGSSRPMNEFDAHRRNFNGKPSRFKIEAMG 60

Query: 61  SRTS--TVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRES 120
            R +    S   WDF QSLWDSYEIVT+SK+LEAGLV D   F EA++   R  RKR+ES
Sbjct: 61  KRAAERNGSCGTWDFKQSLWDSYEIVTMSKRLEAGLVFDNIPFTEADA-HVRVHRKRKES 120

Query: 121 CNSLRNLFNRASSRRFN 136
            NSLR+LFN+ SSRRFN
Sbjct: 121 KNSLRSLFNQMSSRRFN 136

BLAST of CSPI01G08810 vs. NCBI nr
Match: gi|764582686|ref|XP_011464159.1| (PREDICTED: uncharacterized protein LOC105351484 [Fragaria vesca subsp. vesca])

HSP 1 Score: 141.7 bits (356), Expect = 9.3e-31
Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRP-MPSRFKIEAI 60
           MKKK      HD ++ LEILKAVAQAW SH+G+++P SEFDA RRN +  +PSRFK+EA+
Sbjct: 1   MKKKLQ----HDHEQELEILKAVAQAWQSHSGSTRPMSEFDARRRNYKSRLPSRFKLEAM 60

Query: 61  R-SRTSTVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRK 120
           R + +S+ SDR    +WDF QSLWD+YEIV VSK+LE+GLV+DG    E +   GR  R+
Sbjct: 61  REAASSSASDRGTNAKWDFGQSLWDAYEIVAVSKRLESGLVIDG----ELDGSSGRVHRR 120

Query: 121 RRESCNSLRNLFNRASSRRF 135
           RRES NSLR+LF++ SSRR+
Sbjct: 121 RRESKNSLRSLFDKMSSRRY 132

BLAST of CSPI01G08810 vs. NCBI nr
Match: gi|567894874|ref|XP_006439925.1| (hypothetical protein CICLE_v10022689mg [Citrus clementina])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 1

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK +L    DDD  LEILKAVAQAW+ H+G S+P +EFDAHRRN +  PSRF++EA+ 
Sbjct: 1   MKKKLELE---DDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMN 60

Query: 61  SRTST------VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRK 120
             +S+      +S   WDF QSLWDSYE+VTVSKKLEAGL LD + F   +      +R+
Sbjct: 61  KSSSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRR 120

Query: 121 RRESCNSLRNLFNRASSRRFN 136
           R    NSLRNLFNR SSRRF+
Sbjct: 121 RESKKNSLRNLFNRFSSRRFH 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTM3_CUCSA3.2e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1[more]
V4TNE3_9ROSI1.1e-3056.74Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1[more]
A0A151TT50_CAJCA1.9e-3054.81Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1[more]
K7KMT6_SOYBN4.2e-3056.43Uncharacterized protein OS=Glycine max GN=GLYMA_05G041700 PE=4 SV=1[more]
A0A0B2RRC5_GLYSO4.2e-3056.43Uncharacterized protein OS=Glycine soja GN=glysoja_016685 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24700.12.7e-2043.06 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778657893|ref|XP_011651756.1|4.5e-70100.00PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus][more]
gi|659067325|ref|XP_008438871.1|1.4e-6694.85PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo][more]
gi|1009175864|ref|XP_015869119.1|4.9e-3260.58PREDICTED: uncharacterized protein LOC107406504 [Ziziphus jujuba][more]
gi|764582686|ref|XP_011464159.1|9.3e-3157.86PREDICTED: uncharacterized protein LOC105351484 [Fragaria vesca subsp. vesca][more]
gi|567894874|ref|XP_006439925.1|1.6e-3056.74hypothetical protein CICLE_v10022689mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G08810.1CSPI01G08810.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 12..136
score: 1.4

The following gene(s) are paralogous to this gene:

None