CmaCh13G008610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G008610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	Cma_Chr13 : 7077250 .. 7077642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAAGCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAAGCGATACGAAGCCGGTCTTCCGTCGCCGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTACGAGATTGTGGCGGTTTCGAAGAAGCTGGAGGCGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCTGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

mRNA sequence

ATGAAGAACAAAGCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAAGCGATACGAAGCCGGTCTTCCGTCGCCGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTACGAGATTGTGGCGGTTTCGAAGAAGCTGGAGGCGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCTGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Coding sequence (CDS)

ATGAAGAACAAAGCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAAGCGATACGAAGCCGGTCTTCCGTCGCCGGCATGAGGAGATGGGACTTCGGACAGTCGCTGTGGGATTCGTACGAGATTGTGGCGGTTTCGAAGAAGCTGGAGGCGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCTGATGGCGGTGGGCGGAATCAGAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Protein sequence

MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRNLFNRTSRRFN

Homology

[Close]

BLAST of CmaCh13G008610 vs. TrEMBL
Match: A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.5e-49
Identity = 104/126 (82.54%), Postives = 112/126 (88.89%), Query Frame = 1


Query: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66
           + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    R
Sbjct: 10  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDR 69

Query: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129

Query: 127 TSRRFN 131
           +SRRFN
Sbjct: 130 SSRRFN 135

[Close]

BLAST of CmaCh13G008610 vs. TrEMBL
Match: V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 82/138 (59.42%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK K  +ED+D  LEILKAVAQAW  H+G S+P +EFDAHRRN ++ PSRF+LEA+   S
Sbjct: 1   MKKKLELEDDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMNKSS 60

Query: 61  SVAGMR------RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRES 120
           S A          WDFGQSLWDSYE+V VSKKLEAGL LD + F   D      R++RES
Sbjct: 61  SSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRRRES 120

Query: 121 -CNSLRNLFNR-TSRRFN 131
             NSLRNLFNR +SRRF+
Sbjct: 121 KKNSLRNLFNRFSSRRFH 137

[Close]

BLAST of CmaCh13G008610 vs. TrEMBL
Match: A0A151TT50_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-29
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK +  V  E  HLE+LKAVAQAW +H+GTSKP SEFDAHRRN R  PSRFKLEA+    
Sbjct: 1   MKKRPEVRHEPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALNKPP 60

Query: 61  SVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQR-ESCNSLR 120
           + +    WDF  SLWDSYE+V VS+++E GL LD + F +  G    QRK + ES NSLR
Sbjct: 61  TSSKNTYWDFQHSLWDSYELVTVSRRIETGLALD-NPFDQLCGSAPIQRKPKPESKNSLR 120

Query: 121 NLFN-RTSRRFN 131
           NLFN  +SRRFN
Sbjct: 121 NLFNLMSSRRFN 131

[Close]

BLAST of CmaCh13G008610 vs. TrEMBL
Match: M5WLX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRAN-PSRFKLEAIRSR 60
           MK K   ED D  LEILKAVAQAW SH+  S+P SEFDAHRRN     PSRFKLEA+R  
Sbjct: 1   MKKKLQPED-DRELEILKAVAQAWYSHSSGSRPTSEFDAHRRNFTGRLPSRFKLEAMRKS 60

Query: 61  SSVA----GMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESC 120
           +S +    G   WDFGQSLWD+YEIVAVSK+LE GL +D + F + D   R  R++RES 
Sbjct: 61  TSASNQASGYAAWDFGQSLWDAYEIVAVSKRLETGLFVDENPFNKLDSPTRVIRRRRESK 120

Query: 121 NSLRNLFNR-TSRRFN 131
           +SLR+LF++ +SRRFN
Sbjct: 121 HSLRSLFDKMSSRRFN 135

[Close]

BLAST of CmaCh13G008610 vs. TrEMBL
Match: B9RAU1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508640 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 8   EDEDGH-LEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRS------RS 67
           E ED H LEILKAVAQAW  H+G+S+PA+E+DA+RRN +  PSRFK+EA+        R 
Sbjct: 9   EPEDEHQLEILKAVAQAWHGHSGSSRPANEYDAYRRNFQTKPSRFKIEAMNKSLSLTKRV 68

Query: 68  SVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRN 127
           + +   +WDF QSL DSYEIV+++K+LE G+VLD D F   D   R +R+ RES NSLRN
Sbjct: 69  ACSDSGKWDFKQSLLDSYEIVSMAKRLERGMVLDDDPFSGLDNQSRVRRRPRESKNSLRN 128

Query: 128 LFNR-TSRRFN 131
           LFNR +SRRFN
Sbjct: 129 LFNRLSSRRFN 139

[Close]

BLAST of CmaCh13G008610 vs. TAIR10
Match: AT4G24700.1 (AT4G24700.1 unknown protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-20
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 2   KNKAVVEDEDGHLEILKAVAQAWQSHTGTSK-PASEFDAHRRNC--RANPSRFKLEAIRS 61
           +N+   E++   LE++KA AQAW SH+ TSK    EFDA R++   +   SRFK EA+ +
Sbjct: 10  ENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSA 69

Query: 62  RSSVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGG---RNQRKQRESC 121
           +   + +  W+FGQSLWD YEI++VSKKLE  L L+   F  +D  G     ++K R+S 
Sbjct: 70  KHHPSFLD-WEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDSR 129

Query: 122 NSLRNLFNRTSRR 129
           NSLR+LF R+S +
Sbjct: 130 NSLRSLFTRSSSK 141

[Close]

BLAST of CmaCh13G008610 vs. NCBI nr
Match: gi|778657893|ref|XP_011651756.1| (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 9.4e-49
Identity = 104/126 (82.54%), Postives = 112/126 (88.89%), Query Frame = 1


Query: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66
           + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    R
Sbjct: 10  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDR 69

Query: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129

Query: 127 TSRRFN 131
           +SRRFN
Sbjct: 130 SSRRFN 135

[Close]

BLAST of CmaCh13G008610 vs. NCBI nr
Match: gi|659067325|ref|XP_008438871.1| (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 1


Query: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66
           + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    R
Sbjct: 10  LHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSNR 69

Query: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129

Query: 127 TSRRFN 131
           +SRRFN
Sbjct: 130 SSRRFN 135

[Close]

BLAST of CmaCh13G008610 vs. NCBI nr
Match: gi|694370157|ref|XP_009362938.1| (PREDICTED: uncharacterized protein LOC103952950 [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-31
Identity = 81/136 (59.56%), Postives = 98/136 (72.06%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRA-NPSRFKLEAIRSR 60
           MK K  +ED D  LEI+KAVAQAW SH+G S+P SEFDAHRRN +  +PSRFKLEA+R  
Sbjct: 1   MKQKLQLEDVDRELEIIKAVAQAWYSHSGNSRPMSEFDAHRRNYKGKSPSRFKLEAMRKS 60

Query: 61  SSV----AGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESC 120
           SS     +G  +WDFGQSLWD+YEIVAVSK+LE GLVLD     E +   R  R++RES 
Sbjct: 61  SSASAHQSGYEKWDFGQSLWDAYEIVAVSKRLETGLVLD-----ELESSARVHRRRRESK 120

Query: 121 NSLRNLFNRT-SRRFN 131
           +SLR+ FN   SRRF+
Sbjct: 121 HSLRSFFNTMFSRRFD 131

[Close]

BLAST of CmaCh13G008610 vs. NCBI nr
Match: gi|567894874|ref|XP_006439925.1| (hypothetical protein CICLE_v10022689mg [Citrus clementina])

HSP 1 Score: 138.7 bits (348), Expect = 7.4e-30
Identity = 82/138 (59.42%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK K  +ED+D  LEILKAVAQAW  H+G S+P +EFDAHRRN ++ PSRF+LEA+   S
Sbjct: 1   MKKKLELEDDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMNKSS 60

Query: 61  SVAGMR------RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRES 120
           S A          WDFGQSLWDSYE+V VSKKLEAGL LD + F   D      R++RES
Sbjct: 61  SSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRRRES 120

Query: 121 -CNSLRNLFNR-TSRRFN 131
             NSLRNLFNR +SRRF+
Sbjct: 121 KKNSLRNLFNRFSSRRFH 137

[Close]

BLAST of CmaCh13G008610 vs. NCBI nr
Match: gi|568846087|ref|XP_006476889.1| (PREDICTED: uncharacterized protein LOC102623932 [Citrus sinensis])

HSP 1 Score: 138.7 bits (348), Expect = 7.4e-30
Identity = 81/137 (59.12%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MK K  +ED+D  LEILKAVAQAW  H+G S+P +EFDAHRR+ ++ PSRF+LEA    S
Sbjct: 1   MKKKLELEDDDHELEILKAVAQAWYGHSGRSRPTNEFDAHRRHFKSQPSRFRLEATNMSS 60

Query: 61  SVAGMR------RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRES 120
           S A          WDFGQSLWDSYE+V VSKKLEAGL LD + F   D     +R++RES
Sbjct: 61  SSANKETGFSSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDPVPVRRRRRES 120

Query: 121 CNSLRNLFNR-TSRRFN 131
            NSLRNLFNR  SRR N
Sbjct: 121 KNSLRNLFNRFFSRRCN 136

The following BLAST results are available for this feature:

BLAST of CmaCh13G008610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G008610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM3_CUCSA	6.5e-49	82.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1	[more]
V4TNE3_9ROSI	5.2e-30	59.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1	[more]
A0A151TT50_CAJCA	2.6e-29	58.33	Uncharacterized protein OS=Cajanus cajan GN=KK1_009428 PE=4 SV=1	[more]
M5WLX8_PRUPE	5.7e-29	58.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1	[more]
B9RAU1_RICCO	2.2e-28	57.25	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508640 PE=4 SV=1	[more]

BLAST of CmaCh13G008610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24700.1	1.1e-20	44.36	unknown protein	[more]

BLAST of CmaCh13G008610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657893\|ref\|XP_011651756.1\|	9.4e-49	82.54	PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
gi\|659067325\|ref\|XP_008438871.1\|	3.6e-48	81.75	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]	[more]
gi\|694370157\|ref\|XP_009362938.1\|	8.8e-31	59.56	PREDICTED: uncharacterized protein LOC103952950 [Pyrus x bretschneideri]	[more]
gi\|567894874\|ref\|XP_006439925.1\|	7.4e-30	59.42	hypothetical protein CICLE_v10022689mg [Citrus clementina]	[more]
gi\|568846087\|ref\|XP_006476889.1\|	7.4e-30	59.12	PREDICTED: uncharacterized protein LOC102623932 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G008610.1	CmaCh13G008610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 8..130 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G008610	Cucsa.098770	Cucumber (Gy14) v1	cgycmaB0210
CmaCh13G008610	Csa1G046880	Cucumber (Chinese Long) v2	cmacuB217
CmaCh13G008610	MELO3C002298	Melon (DHL92) v3.5.1	cmameB193
CmaCh13G008610	ClCG03G003000	Watermelon (Charleston Gray)	cmawcgB201
CmaCh13G008610	CSPI01G08810	Wild cucumber (PI 183967)	cmacpiB218
CmaCh13G008610	CmoCh18G001530	Cucurbita moschata (Rifu)	cmacmoB224
CmaCh13G008610	CmoCh13G008920	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G008610	Lsi02G004130	Bottle gourd (USVL1VR-Ls)	cmalsiB208
CmaCh13G008610	Cp4.1LG09g09950	Cucurbita pepo (Zucchini)	cmacpeB213
CmaCh13G008610	Cp4.1LG20g02560	Cucurbita pepo (Zucchini)	cmacpeB234
CmaCh13G008610	MELO3C002298.2	Melon (DHL92) v3.6.1	cmamedB214
CmaCh13G008610	CsaV3_1G008840	Cucumber (Chinese Long) v3	cmacucB0248
CmaCh13G008610	Cla97C03G054080	Watermelon (97103) v2	cmawmbB232
CmaCh13G008610	Bhi08G001347	Wax gourd	cmawgoB0268
CmaCh13G008610	CsGy1G008750	Cucumber (Gy14) v2	cgybcmaB073
CmaCh13G008610	Carg07654	Silver-seed gourd	carcmaB1393
CmaCh13G008610	Carg06751	Silver-seed gourd	carcmaB0690

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G008610	Melon (DHL92) v3.5.1	cmameB197
CmaCh13G008610	Watermelon (Charleston Gray)	cmawcgB196
CmaCh13G008610	Watermelon (97103) v1	cmawmB187
CmaCh13G008610	Bottle gourd (USVL1VR-Ls)	cmalsiB202
CmaCh13G008610	Cucumber (Gy14) v2	cgybcmaB063
CmaCh13G008610	Melon (DHL92) v3.6.1	cmamedB218
CmaCh13G008610	Cucumber (Chinese Long) v3	cmacucB0235
CmaCh13G008610	Watermelon (97103) v2	cmawmbB227
CmaCh13G008610	Cucurbita maxima (Rimu)	cmacmaB217