Lsi02G004130 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G004130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Locationchr02 : 3457671 .. 3458078 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

mRNA sequence

ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

Protein sequence

MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY
BLAST of Lsi02G004130 vs. TrEMBL
Match: A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.5e-56
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1

Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP P SRFK+EAIR
Sbjct: 2   KKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMP-SRFKIEAIR 61

Query: 63  TRSS-VTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R+S V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

BLAST of Lsi02G004130 vs. TrEMBL
Match: V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1

Query: 3   KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR 62
           KKK EL+ DDH  LEILKAVAQAW+ H+G S+P  EFDAHRRN + + PSRF+LEA+   
Sbjct: 2   KKKLELEDDDHE-LEILKAVAQAWYGHSGGSRPTNEFDAHRRNFK-SQPSRFRLEAMNKS 61

Query: 63  SS-------VTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKR 122
           SS       ++   WDFGQSLWDSYE+VTVSKKLEAGL LD + F   D      +R++ 
Sbjct: 62  SSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRRRE 121

Query: 123 ESCNSLRNLFSRASSRRFH 135
              NSLRNLF+R SSRRFH
Sbjct: 122 SKKNSLRNLFNRFSSRRFH 137

BLAST of Lsi02G004130 vs. TrEMBL
Match: I1MTC4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G084500 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = 1

Query: 3   KKKPELQHDDH--RHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KK+PE+Q   H  + LE+LKAVAQAW++H+GTSKP +EF AHRRN R + PSRFKLEA+ 
Sbjct: 2   KKRPEIQQHQHEPQDLEVLKAVAQAWYSHSGTSKPMSEFYAHRRNFRGSKPSRFKLEALN 61

Query: 63  TRSSVTDRR------WDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKK 122
              + +  R      WDF QSLWDSYE+VTVS+++E GL LD + F E  G      ++K
Sbjct: 62  KPQASSSSRDTTTIYWDFQQSLWDSYELVTVSRRIETGLTLD-NPFDELCGSASIQHKRK 121

Query: 123 RESCNSLRNLFSRASSRRFH 135
            ES NSLRNLF+  SSRRF+
Sbjct: 122 PESKNSLRNLFNLMSSRRFN 140

BLAST of Lsi02G004130 vs. TrEMBL
Match: A0A0B2QF59_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_006825 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = 1

Query: 3   KKKPELQHDDH--RHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KK+PE+Q   H  + LE+LKAVAQAW++H+GTSKP +EF AHRRN R + PSRFKLEA+ 
Sbjct: 2   KKRPEIQQHQHEPQDLEVLKAVAQAWYSHSGTSKPMSEFYAHRRNFRGSKPSRFKLEALN 61

Query: 63  TRSSVTDRR------WDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKK 122
              + +  R      WDF QSLWDSYE+VTVS+++E GL LD + F E  G      ++K
Sbjct: 62  KPQASSSSRDTTTIYWDFQQSLWDSYELVTVSRRIETGLTLD-NPFDELCGSASIQHKRK 121

Query: 123 RESCNSLRNLFSRASSRRFH 135
            ES NSLRNLF+  SSRRF+
Sbjct: 122 PESKNSLRNLFNLMSSRRFN 140

BLAST of Lsi02G004130 vs. TrEMBL
Match: M5WLX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 78/139 (56.12%), Postives = 100/139 (71.94%), Query Frame = 1

Query: 1   MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 60
           MKKK   LQ +D R LEILKAVAQAW++H+  S+P +EFDAHRRN     PSRFKLEA+R
Sbjct: 1   MKKK---LQPEDDRELEILKAVAQAWYSHSSGSRPTSEFDAHRRNFTGRLPSRFKLEAMR 60

Query: 61  TRSSVTDR-----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKR 120
             +S +++      WDFGQSLWD+YEIV VSK+LE GL +D + F + D    R  R++R
Sbjct: 61  KSTSASNQASGYAAWDFGQSLWDAYEIVAVSKRLETGLFVDENPFNKLD-SPTRVIRRRR 120

Query: 121 ESCNSLRNLFSRASSRRFH 135
           ES +SLR+LF + SSRRF+
Sbjct: 121 ESKHSLRSLFDKMSSRRFN 135

BLAST of Lsi02G004130 vs. TAIR10
Match: AT4G24700.1 (AT4G24700.1 unknown protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-22
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 1

Query: 2   KKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPAT-EFDAHRRNSRPT-PPSRFKLEAI 61
           K +  E + +  + LE++KA AQAW +H+ TSK    EFDA R+++      SRFK EA+
Sbjct: 8   KDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEAL 67

Query: 62  RTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKK--RES 121
             +   +   W+FGQSLWD YEI++VSKKLE  L L+   F  +D  G +  +KK  R+S
Sbjct: 68  SAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDS 127

Query: 122 CNSLRNLFSRASSRRF 134
            NSLR+LF+R+SS+RF
Sbjct: 128 RNSLRSLFTRSSSKRF 143

BLAST of Lsi02G004130 vs. NCBI nr
Match: gi|778657893|ref|XP_011651756.1| (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1

Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP P SRFK+EAIR
Sbjct: 2   KKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMP-SRFKIEAIR 61

Query: 63  TRSS-VTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R+S V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

BLAST of Lsi02G004130 vs. NCBI nr
Match: gi|659067325|ref|XP_008438871.1| (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 4.1e-55
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 1

Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPTP SRFKLEAIR
Sbjct: 2   KKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTP-SRFKLEAIR 61

Query: 63  TRS-SVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R+ SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

BLAST of Lsi02G004130 vs. NCBI nr
Match: gi|764582686|ref|XP_011464159.1| (PREDICTED: uncharacterized protein LOC105351484 [Fragaria vesca subsp. vesca])

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-33
Identity = 84/139 (60.43%), Postives = 104/139 (74.82%), Query Frame = 1

Query: 1   MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 60
           MKKK   LQHD  + LEILKAVAQAW +H+G+++P +EFDA RRN +   PSRFKLEA+R
Sbjct: 1   MKKK---LQHDHEQELEILKAVAQAWQSHSGSTRPMSEFDARRRNYKSRLPSRFKLEAMR 60

Query: 61  --TRSSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKK 120
               SS +DR    +WDFGQSLWD+YEIV VSK+LE+GLV+DG    E DG  GR  R++
Sbjct: 61  EAASSSASDRGTNAKWDFGQSLWDAYEIVAVSKRLESGLVIDG----ELDGSSGRVHRRR 120

Query: 121 RESCNSLRNLFSRASSRRF 134
           RES NSLR+LF + SSRR+
Sbjct: 121 RESKNSLRSLFDKMSSRRY 132

BLAST of Lsi02G004130 vs. NCBI nr
Match: gi|567894874|ref|XP_006439925.1| (hypothetical protein CICLE_v10022689mg [Citrus clementina])

HSP 1 Score: 139.4 bits (350), Expect = 4.5e-30
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1

Query: 3   KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR 62
           KKK EL+ DDH  LEILKAVAQAW+ H+G S+P  EFDAHRRN + + PSRF+LEA+   
Sbjct: 2   KKKLELEDDDHE-LEILKAVAQAWYGHSGGSRPTNEFDAHRRNFK-SQPSRFRLEAMNKS 61

Query: 63  SS-------VTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKR 122
           SS       ++   WDFGQSLWDSYE+VTVSKKLEAGL LD + F   D      +R++ 
Sbjct: 62  SSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRRRE 121

Query: 123 ESCNSLRNLFSRASSRRFH 135
              NSLRNLF+R SSRRFH
Sbjct: 122 SKKNSLRNLFNRFSSRRFH 137

BLAST of Lsi02G004130 vs. NCBI nr
Match: gi|645268004|ref|XP_008239335.1| (PREDICTED: uncharacterized protein LOC103337939 [Prunus mume])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 79/139 (56.83%), Postives = 100/139 (71.94%), Query Frame = 1

Query: 1   MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 60
           MKKK   LQ  D R LEILKAVAQAW++H+  S+P +EFDAHRRN R   PSRFKLEA+R
Sbjct: 1   MKKK---LQPGDDRELEILKAVAQAWYSHSSGSRPTSEFDAHRRNFRGRLPSRFKLEAMR 60

Query: 61  TRSSVTDR-----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKR 120
             +S +++      WDFGQSLWD+YEIV VSK+LE GL +D + F + D    R  R++R
Sbjct: 61  KSTSASNQASGYAAWDFGQSLWDAYEIVAVSKRLETGLFVDENPFNQLD-SQTRVIRRRR 120

Query: 121 ESCNSLRNLFSRASSRRFH 135
           ES +SLR+LF + SSRRF+
Sbjct: 121 ESKHSLRSLFDKMSSRRFN 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTM3_CUCSA7.5e-5685.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046880 PE=4 SV=1[more]
V4TNE3_9ROSI3.2e-3058.99Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022689mg PE=4 SV=1[more]
I1MTC4_SOYBN2.0e-2955.00Uncharacterized protein OS=Glycine max GN=GLYMA_17G084500 PE=4 SV=1[more]
A0A0B2QF59_GLYSO2.0e-2955.00Uncharacterized protein OS=Glycine soja GN=glysoja_006825 PE=4 SV=1[more]
M5WLX8_PRUPE6.0e-2956.12Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024800mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24700.12.8e-2245.59 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778657893|ref|XP_011651756.1|1.1e-5585.29PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus][more]
gi|659067325|ref|XP_008438871.1|4.1e-5585.29PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo][more]
gi|764582686|ref|XP_011464159.1|3.4e-3360.43PREDICTED: uncharacterized protein LOC105351484 [Fragaria vesca subsp. vesca][more]
gi|567894874|ref|XP_006439925.1|4.5e-3058.99hypothetical protein CICLE_v10022689mg [Citrus clementina][more]
gi|645268004|ref|XP_008239335.1|2.9e-2956.83PREDICTED: uncharacterized protein LOC103337939 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G004130.1Lsi02G004130.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 1..135
score: 8.7

The following gene(s) are paralogous to this gene:

None