CsGy1G008750 (gene) Cucumber (Gy14) v2

NameCsGy1G008750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
LocationChr1 : 5482965 .. 5483375 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

mRNA sequence

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Protein sequence

MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
BLAST of CsGy1G008750 vs. NCBI nr
Match: XP_011651756.1 (PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus] >KGN64344.1 hypothetical protein Csa_1G046880 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsGy1G008750 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 5.9e-66
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsGy1G008750 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 9.4e-48
Identity = 104/126 (82.54%), Postives = 112/126 (88.89%), Query Frame = 0

Query: 10  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDR 69
           + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    R
Sbjct: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66

Query: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126

Query: 130 SSRRFN 136
           +SRRFN
Sbjct: 127 TSRRFN 130

BLAST of CsGy1G008750 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA+ GGGR+QRK+RESCN
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREAD-GGGRNQRKQRESCN 143

Query: 121 SLRNLFNRASSRRFN 136
           SLRNLFNR +SRRFN
Sbjct: 144 SLRNLFNR-TSRRFN 153

BLAST of CsGy1G008750 vs. NCBI nr
Match: XP_023519325.1 (uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA +GGGR+QRK+RESCN
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA-NGGGRNQRKQRESCN 143

Query: 121 SLRNLFNRASSRRFN 136
           SLRNLFNR +SRRFN
Sbjct: 144 SLRNLFNR-TSRRFN 153

BLAST of CsGy1G008750 vs. TAIR10
Match: AT4G24700.1 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0

Query: 21  KAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPSRFKIEAIRSRTSTVSDRRWDFAQSL 80
           KA AQAW SH+ TSK    EFDA R+++  +   SRFK EA+ ++    S   W+F QSL
Sbjct: 26  KAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSAKHHP-SFLDWEFGQSL 85

Query: 81  WDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQ--RKRRESCNSLRNLFNRASSRRF 135
           WD YEI++VSKKLE  L L+   F  +++ G +           NSLR+LF R+SS+RF
Sbjct: 86  WDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMXXXXXXXXXNSLRSLFTRSSSKRF 143

BLAST of CsGy1G008750 vs. TrEMBL
Match: tr|A0A0A0LTM3|A0A0A0LTM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsGy1G008750 vs. TrEMBL
Match: tr|A0A1S3AX17|A0A1S3AX17_CUCME (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of CsGy1G008750 vs. TrEMBL
Match: tr|V4TNE3|V4TNE3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022689mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.9e-30
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKK    +L DDD  LEILKAVAQAW+ H+G S+P +EFDAHRRN +  PSRF++EA+ 
Sbjct: 1   MKKK---LELEDDDHELEILKAVAQAWYGHSGGSRPTNEFDAHRRNFKSQPSRFRLEAMN 60

Query: 61  SRTST------VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRK 120
             +S+      +S   WDF QSLWDSYE+VTVSKKLEAGL LD + F   +      +R+
Sbjct: 61  KSSSSANKETGISSANWDFGQSLWDSYELVTVSKKLEAGLSLD-NPFSGLDDTVPVHRRR 120

Query: 121 RRESCNSLRNLFNRASSRRFN 136
           R    NSLRNLFNR SSRRF+
Sbjct: 121 RESKKNSLRNLFNRFSSRRFH 137

BLAST of CsGy1G008750 vs. TrEMBL
Match: tr|A0A151TT50|A0A151TT50_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009428 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.7e-30
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKK+P++     + +HLE+LKAVAQAW++H+GTSKP SEFDAHRRN R  PSRFK+EA+ 
Sbjct: 1   MKKRPEVRH---EPQHLEVLKAVAQAWYNHSGTSKPMSEFDAHRRNFRGKPSRFKLEALN 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
              ++  +  WDF  SLWDSYE+VTVS+++E GL LD + F +        ++ + ES N
Sbjct: 61  KPPTSSKNTYWDFQHSLWDSYELVTVSRRIETGLALD-NPFDQLCGSAPIQRKPKPESKN 120

Query: 121 SLRNLFNRASSRRFN 136
           SLRNLFN  SSRRFN
Sbjct: 121 SLRNLFNLMSSRRFN 131

BLAST of CsGy1G008750 vs. TrEMBL
Match: tr|A0A2P6P5N7|A0A2P6P5N7_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192551 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 79/138 (57.25%), Postives = 103/138 (74.64%), Query Frame = 0

Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSR-PMPSRFKIEAI 60
           MKKK      +D ++ LEILKAVAQAW SH+G+S+P +EFDA RRN +  +PSRFK+EA+
Sbjct: 1   MKKKLQ----NDHEQELEILKAVAQAWQSHSGSSRPMTEFDARRRNYKGRLPSRFKLEAM 60

Query: 61  R---SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRR 120
           R   S + + ++ +WDF QSLWD+YEIV VSK+LE+GLVLDG    E +   GR  R+RR
Sbjct: 61  RKAASSSESGTNAKWDFGQSLWDAYEIVAVSKRLESGLVLDG----ELDGSSGRVHRRRR 120

Query: 121 ESCNSLRNLFNRASSRRF 135
           ES NSLRNLF++ SSRR+
Sbjct: 121 ESKNSLRNLFDKRSSRRY 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011651756.12.0e-69100.00PREDICTED: uncharacterized protein LOC105434938 [Cucumis sativus] >KGN64344.1 hy... [more]
XP_008438871.15.9e-6694.85PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo][more]
XP_023001654.19.4e-4882.54uncharacterized protein LOC111495727 [Cucurbita maxima][more]
XP_022923731.11.6e-4779.26uncharacterized protein LOC111431350 [Cucurbita moschata][more]
XP_023519325.12.1e-4779.26uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT4G24700.11.5e-1545.38unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LTM3|A0A0A0LTM3_CUCSA1.3e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1[more]
tr|A0A1S3AX17|A0A1S3AX17_CUCME3.9e-6694.85uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=... [more]
tr|V4TNE3|V4TNE3_9ROSI5.9e-3056.74Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022689mg PE=4 ... [more]
tr|A0A151TT50|A0A151TT50_CAJCA7.7e-3054.81Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009428 PE=4 SV=1[more]
tr|A0A2P6P5N7|A0A2P6P5N7_ROSCH1.0e-2957.25Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192551 PE=4... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G008750.1CsGy1G008750.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..49
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 4..110

The following gene(s) are paralogous to this gene:

None