CmoCh11G013300 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 5.6e-18 Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 7.3e-18 Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17 Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17 Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17 Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 3.1e-39 Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 1.1e-36 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.9e-36 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.9e-36 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0B2R0A8_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmoCh11G013300 vs. TAIR10
Match: AT2G15910.1 (AT2G15910.1 CSL zinc finger domain-containing protein) HSP 1 Score: 140.6 bits (353), Expect = 4.5e-34 Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1
BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]) HSP 1 Score: 171.4 bits (433), Expect = 6.8e-40 Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 1
BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus]) HSP 1 Score: 168.7 bits (426), Expect = 4.4e-39 Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1
BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus]) HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max]) HSP 1 Score: 159.5 bits (402), Expect = 2.7e-36 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|1009168474|ref|XP_015902678.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba]) HSP 1 Score: 159.5 bits (402), Expect = 2.7e-36 Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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