CmoCh11G013300 (gene) Cucurbita moschata (Rifu)

NameCmoCh11G013300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDiphthamide biosynthesis protein, putative
LocationCmo_Chr11 : 9193690 .. 9193947 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA

mRNA sequence

ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA

Coding sequence (CDS)

ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAAATCACGAAGGAGGATCTTAAGCTCGGAGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTGGCTTAA
BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-18
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLE 76
          + G++V   +T  E
Sbjct: 65 MCGETVPAPSTNKE 78

BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-18
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLE 76
          + G++V   +T  E
Sbjct: 65 MCGETVPAPSTNKE 78

BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED
Sbjct: 3  TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKED 62

Query: 62 FLGDSVQKNNTGLEP 77
           +   V+ N   LEP
Sbjct: 63 LVEYYVEAN---LEP 74

BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF
Sbjct: 5  HDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYDPEDF 64

Query: 63 L 64
          +
Sbjct: 65 V 65

BLAST of CmoCh11G013300 vs. Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSV 68
          + G++V
Sbjct: 65 VCGETV 70

BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 86
          DFL  S QKNN GLEPSKQ P VVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmoCh11G013300 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKN-NTGLEPSKQRPAVVA 86
          DFLGDS Q + N GL+PSKQ+   +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmoCh11G013300 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPSKQRPAVVA 86
          DFL DS Q + N GL+PSKQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPSKQRPAVVA 86
          DFL DS Q + N GL+PSKQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmoCh11G013300 vs. TrEMBL
Match: A0A0B2R0A8_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL LGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLMLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPSKQRPAVVA 86
          DFL DS Q + N GL+PSKQ+P  VA
Sbjct: 61 DFLADSDQNRRNKGLQPSKQQPLTVA 86

BLAST of CmoCh11G013300 vs. TAIR10
Match: AT2G15910.1 (AT2G15910.1 CSL zinc finger domain-containing protein)

HSP 1 Score: 140.6 bits (353), Expect = 4.5e-34
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPSKQRP 82
          DF  D+ +KNN   EP  + P
Sbjct: 61 DFQNDT-KKNN---EPKTRHP 77

BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 6.8e-40
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 86
          DFL DS QKNN GLEPSKQ P VVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 86
          DFL  S QKNN GLEPSKQ P VVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKN-NTGLEPSKQRPAVVA 86
          DFLGDS Q + N GL+PSKQ+   +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max])

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPSKQRPAVVA 86
          DFL DS Q + N GL+PSKQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmoCh11G013300 vs. NCBI nr
Match: gi|1009168474|ref|XP_015902678.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba])

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-36
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITK+DLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 86
          DF G+  +K N GLEPSKQ+   VA
Sbjct: 61 DFSGEPDRKTNKGLEPSKQQTVTVA 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DPH3_CRIGR5.6e-1852.70DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1[more]
DPH3_MOUSE7.3e-1852.70DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1[more]
DPH3_KLULA2.1e-1754.67Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / C... [more]
DPH3_CAEEL2.1e-1759.02DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1[more]
DPH3_PONAB2.8e-1756.06DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K4W9_CUCSA3.1e-3991.76Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1[more]
I3SPP6_LOTJA1.1e-3686.05Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
K7LPC5_SOYBN1.9e-3686.05Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1[more]
A0A0B2PEW4_GLYSO1.9e-3686.05DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1[more]
A0A0B2R0A8_GLYSO5.4e-3684.88DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15910.14.5e-3480.25 CSL zinc finger domain-containing protein[more]
Match NameE-valueIdentityDescription
gi|659109803|ref|XP_008454889.1|6.8e-4092.94PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo][more]
gi|449438452|ref|XP_004137002.1|4.4e-3991.76PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus][more]
gi|388508344|gb|AFK42238.1|1.6e-3686.05unknown [Lotus japonicus][more]
gi|571488375|ref|XP_003537913.2|2.7e-3686.05PREDICTED: diphthamide biosynthesis protein 3 [Glycine max][more]
gi|1009168474|ref|XP_015902678.1|2.7e-3684.71PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013300.1CmoCh11G013300.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007872Zinc finger, DPH-typePFAMPF05207zf-CSLcoord: 4..58
score: 5.5
IPR007872Zinc finger, DPH-typePROFILEPS51074ZF_DPHcoord: 2..58
score: 23
NoneNo IPR availablePANTHERPTHR21454FAMILY NOT NAMEDcoord: 1..81
score: 9.4
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOG B-RELATEDcoord: 1..81
score: 9.4
NoneNo IPR availableunknownSSF144217CSL zinc fingercoord: 2..71
score: 2.09

The following gene(s) are paralogous to this gene:

None