Cla97C02G032500 (gene) Watermelon (97103) v2

NameCla97C02G032500
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptiondiphthamide biosynthesis protein 3-like
LocationCla97Chr02 : 5615722 .. 5615979 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

mRNA sequence

ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

Coding sequence (CDS)

ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

Protein sequence

MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGIEPPKQQPIVVA
BLAST of Cla97C02G032500 vs. NCBI nr
Match: XP_022972367.1 (diphthamide biosynthesis protein 3-like [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 2.4e-41
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFLGDS+ KNNKG++P KQQPIVVA
Sbjct: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 85

BLAST of Cla97C02G032500 vs. NCBI nr
Match: XP_008454889.1 (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo] >XP_008454890.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 4.1e-41
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL DSNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla97C02G032500 vs. NCBI nr
Match: XP_022136247.1 (diphthamide biosynthesis protein 3-like [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 4.1e-41
Identity = 79/85 (92.94%), Postives = 84/85 (98.82%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFLGDS+QKNNKGI+P KQQPIVVA
Sbjct: 61 DFLGDSDQKNNKGIQPSKQQPIVVA 85

BLAST of Cla97C02G032500 vs. NCBI nr
Match: XP_004137002.1 (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus] >KGN43974.1 hypothetical protein Csa_7G075060 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL  SNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla97C02G032500 vs. NCBI nr
Match: XP_022931585.1 (diphthamide biosynthesis protein 3-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 4.5e-40
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFLGDS QKNN G+EP KQ+P VVA
Sbjct: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 85

BLAST of Cla97C02G032500 vs. TrEMBL
Match: tr|A0A1S3BZL5|A0A1S3BZL5_CUCME (diphthamide biosynthesis protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495198 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-41
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL DSNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla97C02G032500 vs. TrEMBL
Match: tr|A0A0A0K4W9|A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075060 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-40
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL  SNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla97C02G032500 vs. TrEMBL
Match: tr|A0A200QTM0|A0A200QTM0_9MAGN (Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1769g68 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.2e-38
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKE+LK+GEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEELKIGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DF+GDS++ + K +EP KQQP+ VA
Sbjct: 61 DFMGDSDRNSKKNLEPSKQQPVAVA 85

BLAST of Cla97C02G032500 vs. TrEMBL
Match: tr|B9RZF9|B9RZF9_RICCO (Diphthamide biosynthesis protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0939000 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL D   KN K IEPPKQQP+ VA
Sbjct: 61 DFL-DDKSKNKKNIEPPKQQPVAVA 84

BLAST of Cla97C02G032500 vs. TrEMBL
Match: tr|A0A2I4HGW5|A0A2I4HGW5_9ROSI (diphthamide biosynthesis protein 3-like OS=Juglans regia OX=51240 GN=LOC109017527 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 72/85 (84.71%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITK++L+LGEEIARCPSCSLYITV+YN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRLGEEIARCPSCSLYITVVYNIE 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFLGDS+QK NK ++PPKQQP+ VA
Sbjct: 61 DFLGDSDQK-NKNLDPPKQQPVAVA 84

BLAST of Cla97C02G032500 vs. Swiss-Prot
Match: sp|Q21102|DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans OX=6239 GN=K01H12.1 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-18
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 0

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF
Sbjct: 5  HDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYDPEDF 64

Query: 63 LGDSNQKNNKGIEPP 78
          +       +K I  P
Sbjct: 65 VKLETISTSKPIAEP 79

BLAST of Cla97C02G032500 vs. Swiss-Prot
Match: sp|Q74Z32|DPH3_ASHGO (Diphthamide biosynthesis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-17
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+Y + D 
Sbjct: 4  YDEVEIEDMTFDPDTQLFTYPCPCGDRFQISIDDMCDGEDIAVCPSCSLMIKVVYELHDL 63

Query: 63 LGDSNQKNNKGIEPP 78
                 +  G+EPP
Sbjct: 64 ---QEYYDEAGVEPP 75

BLAST of Cla97C02G032500 vs. Swiss-Prot
Match: sp|Q6CMG4|DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED
Sbjct: 3  TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKED 62

Query: 62 FLGDSNQKNNKGIEPPKQQPIVV 85
           +    + N   +EPP +  + V
Sbjct: 63 LVEYYVEAN---LEPPGKIAVAV 82

BLAST of Cla97C02G032500 vs. Swiss-Prot
Match: sp|Q3E840|DPH3_YEAST (Diphthamide biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KTI11 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD++EIEDM +  E Q FTYPCPCGD FQI  +D+  GE++A CPSCSL I V+++ ED
Sbjct: 3  TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKED 62

Query: 62 FLGDSNQKNNKGIEPPKQQPIVVA 86
              +      GI PP  +PI  A
Sbjct: 63 L---AEYYEEAGIHPP--EPIAAA 81

BLAST of Cla97C02G032500 vs. Swiss-Prot
Match: sp|Q6VUC1|DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus OX=10029 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L 64
          +
Sbjct: 65 M 65

BLAST of Cla97C02G032500 vs. TAIR10
Match: AT2G15910.1 (CSL zinc finger domain-containing protein)

HSP 1 Score: 141.0 bits (354), Expect = 3.5e-34
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPI 83
          DF  D+ +KNN   EP  + P+
Sbjct: 61 DFQNDT-KKNN---EPKTRHPV 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022972367.12.4e-4194.12diphthamide biosynthesis protein 3-like [Cucurbita maxima][more]
XP_008454889.14.1e-4194.12PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo] >XP_008454890.... [more]
XP_022136247.14.1e-4192.94diphthamide biosynthesis protein 3-like [Momordica charantia][more]
XP_004137002.12.7e-4092.94PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus] >KGN43974.1... [more]
XP_022931585.14.5e-4092.94diphthamide biosynthesis protein 3-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
tr|A0A1S3BZL5|A0A1S3BZL5_CUCME2.7e-4194.12diphthamide biosynthesis protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495198 ... [more]
tr|A0A0A0K4W9|A0A0A0K4W9_CUCSA1.8e-4092.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075060 PE=4 SV=1[more]
tr|A0A200QTM0|A0A200QTM0_9MAGN6.2e-3884.71Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1769g68 PE=4 SV=1[more]
tr|B9RZF9|B9RZF9_RICCO1.1e-3788.24Diphthamide biosynthesis protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0... [more]
tr|A0A2I4HGW5|A0A2I4HGW5_9ROSI1.4e-3784.71diphthamide biosynthesis protein 3-like OS=Juglans regia OX=51240 GN=LOC10901752... [more]
Match NameE-valueIdentityDescription
sp|Q21102|DPH3_CAEEL5.7e-1852.00DPH3 homolog OS=Caenorhabditis elegans OX=6239 GN=K01H12.1 PE=3 SV=1[more]
sp|Q74Z32|DPH3_ASHGO1.3e-1753.33Diphthamide biosynthesis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... [more]
sp|Q6CMG4|DPH3_KLULA2.2e-1749.40Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / C... [more]
sp|Q3E840|DPH3_YEAST2.2e-1750.00Diphthamide biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 2045... [more]
sp|Q6VUC1|DPH3_CRIGR2.8e-1757.38DPH3 homolog OS=Cricetulus griseus OX=10029 GN=DPH3 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15910.13.5e-3479.27CSL zinc finger domain-containing protein[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
IPR036671Znf_DHP_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G032500.1Cla97C02G032500.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036671DPH Zinc finger superfamilyGENE3DG3DSA:3.10.660.10coord: 1..85
e-value: 4.9E-32
score: 111.6
IPR036671DPH Zinc finger superfamilySUPERFAMILYSSF144217CSL zinc fingercoord: 2..72
IPR007872Zinc finger, DPH-typePFAMPF05207zf-CSLcoord: 4..58
e-value: 5.6E-22
score: 77.1
IPR007872Zinc finger, DPH-typePROSITEPS51074ZF_DPHcoord: 2..58
score: 23.351
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOG-RELATEDcoord: 1..72
NoneNo IPR availablePANTHERPTHR21454FAMILY NOT NAMEDcoord: 1..72

The following gene(s) are paralogous to this gene:

None