Cla015974 (gene) Watermelon (97103) v1

NameCla015974
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDiphthamide biosynthesis protein 3 (AHRD V1 **-- B6TQQ1_MAIZE); contains Interpro domain(s) IPR007872 Zinc finger, DPH-type
LocationChr2 : 5706327 .. 5706584 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

mRNA sequence

ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

Coding sequence (CDS)

ATGTCGTACGACGACGTAGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACATACCCATGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACGGTCATCTACAACATGGAAGATTTTCTTGGAGACTCTAATCAGAAGAATAACAAAGGAATTGAGCCCCCTAAACAACAGCCTATCGTGGTCGCTTAA

Protein sequence

MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGIEPPKQQPIVVA
BLAST of Cla015974 vs. Swiss-Prot
Match: DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-17
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF
Sbjct: 5  HDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYDPEDF 64

Query: 63 LGDSNQKNNKGIEPP 78
          +       +K I  P
Sbjct: 65 VKLETISTSKPIAEP 79

BLAST of Cla015974 vs. Swiss-Prot
Match: DPH3_ASHGO (Diphthamide biosynthesis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPH3 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-17
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+Y + D 
Sbjct: 4  YDEVEIEDMTFDPDTQLFTYPCPCGDRFQISIDDMCDGEDIAVCPSCSLMIKVVYELHDL 63

Query: 63 LGDSNQKNNKGIEPP 78
                 +  G+EPP
Sbjct: 64 ---QEYYDEAGVEPP 75

BLAST of Cla015974 vs. Swiss-Prot
Match: DPH3_DROME (DPH3 homolog OS=Drosophila melanogaster GN=CG14701 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F
Sbjct: 5  HDEVEIEDFEYDEEEEMYYYPCPCGDRFQISKEELIEGEEVATCPSCSLVIKVIYDPEMF 64

Query: 63 LGDSNQKN 71
            + ++++
Sbjct: 65 KAEEDEES 72

BLAST of Cla015974 vs. Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-16
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED
Sbjct: 3  TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKED 62

Query: 62 FLGDSNQKNNKGIEPPKQQPIVV 85
           +    + N   +EPP +  + V
Sbjct: 63 LVEYYVEAN---LEPPGKIAVAV 82

BLAST of Cla015974 vs. Swiss-Prot
Match: DPH3_YEAST (Diphthamide biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KTI11 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD++EIEDM +  E Q FTYPCPCGD FQI  +D+  GE++A CPSCSL I V+++ ED
Sbjct: 3  TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKED 62

Query: 62 FLGDSNQKNNKGIEPPKQQPIVVA 86
              +      GI PP  +PI  A
Sbjct: 63 L---AEYYEEAGIHPP--EPIAAA 81

BLAST of Cla015974 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL  SNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla015974 vs. TrEMBL
Match: B9RZF9_RICCO (Diphthamide biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0939000 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.4e-37
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL D   KN K IEPPKQQP+ VA
Sbjct: 61 DFL-DDKSKNKKNIEPPKQQPVAVA 84

BLAST of Cla015974 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.3e-37
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKN-NKGIEPPKQQPIVVA 86
          DFLGDS+Q + NKG++P KQQ + +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of Cla015974 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSNQ-KNNKGIEPPKQQPIVVA 86
          DFL DS+Q + NKG++P KQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of Cla015974 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSNQ-KNNKGIEPPKQQPIVVA 86
          DFL DS+Q + NKG++P KQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of Cla015974 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL DSNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla015974 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL  SNQKNNKG+EP KQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of Cla015974 vs. NCBI nr
Match: gi|255556187|ref|XP_002519128.1| (PREDICTED: diphthamide biosynthesis protein 3 [Ricinus communis])

HSP 1 Score: 161.0 bits (406), Expect = 9.2e-37
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKNNKGIEPPKQQPIVVA 86
          DFL D   KN K IEPPKQQP+ VA
Sbjct: 61 DFL-DDKSKNKKNIEPPKQQPVAVA 84

BLAST of Cla015974 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSNQKN-NKGIEPPKQQPIVVA 86
          DFLGDS+Q + NKG++P KQQ + +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of Cla015974 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max])

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSNQ-KNNKGIEPPKQQPIVVA 86
          DFL DS+Q + NKG++P KQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DPH3_CAEEL4.7e-1752.00DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1[more]
DPH3_ASHGO8.1e-1753.33Diphthamide biosynthesis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... [more]
DPH3_DROME1.1e-1655.88DPH3 homolog OS=Drosophila melanogaster GN=CG14701 PE=3 SV=1[more]
DPH3_KLULA1.8e-1649.40Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / C... [more]
DPH3_YEAST2.3e-1650.00Diphthamide biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 2045... [more]
Match NameE-valueIdentityDescription
A0A0A0K4W9_CUCSA1.1e-3992.94Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1[more]
B9RZF9_RICCO6.4e-3788.24Diphthamide biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0939000 P... [more]
I3SPP6_LOTJA8.3e-3786.05Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PEW4_GLYSO1.4e-3686.05DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1[more]
K7LPC5_SOYBN1.4e-3686.05Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659109803|ref|XP_008454889.1|2.3e-4094.12PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo][more]
gi|449438452|ref|XP_004137002.1|1.5e-3992.94PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus][more]
gi|255556187|ref|XP_002519128.1|9.2e-3788.24PREDICTED: diphthamide biosynthesis protein 3 [Ricinus communis][more]
gi|388508344|gb|AFK42238.1|1.2e-3686.05unknown [Lotus japonicus][more]
gi|571488375|ref|XP_003537913.2|2.0e-3686.05PREDICTED: diphthamide biosynthesis protein 3 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05426watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU07853watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU10254watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU38970watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015974Cla015974.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU38970WMU38970transcribed_cluster
WMU10254WMU10254transcribed_cluster
WMU05426WMU05426transcribed_cluster
WMU07853WMU07853transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007872Zinc finger, DPH-typePFAMPF05207zf-CSLcoord: 4..58
score: 5.5
IPR007872Zinc finger, DPH-typePROFILEPS51074ZF_DPHcoord: 2..58
score: 23
NoneNo IPR availablePANTHERPTHR21454FAMILY NOT NAMEDcoord: 1..82
score: 1.6
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOG B-RELATEDcoord: 1..82
score: 1.6
NoneNo IPR availableunknownSSF144217CSL zinc fingercoord: 2..72
score: 1.11

The following gene(s) are paralogous to this gene:

None