CmaCh11G017790 (gene) Cucurbita maxima (Rimu)

NameCmaCh11G017790
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDiphthamide biosynthesis protein, putative
LocationCma_Chr11 : 11903764 .. 11904428 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGGTTATCATCAGTCCTAAGGGGGCCTATCTTTACGAGGAGTTGTGCATAAGGTCGGACTCCGTCCATCAACATTGGATATGAGTGCTCTTCATGTGCATGTGGCCATGATGTAGCATAATAATTCTAGCATGCTTAAACCTAATAAAAGAAAGAATTGAATGTGAGTTACACTTTGGAACTAGTTCAATAAAAAAAGCCTAATTTGGAGGCGGTCTCCCGAAATTCAGAGTCCACCAAATCCCTATAGCCCTTACTCAATCTTCTTCGTCTACCTCCGAATTCGTTGGTTGCAGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

mRNA sequence

ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

Coding sequence (CDS)

ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

Protein sequence

MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPYKQRPAVVA
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +T  E  K
Sbjct: 65 MCGETVPAPSTNKELVK 81

BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +T  E  K
Sbjct: 65 MCGETVPAPSTNKELVK 81

BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +   E  K
Sbjct: 65 VCGETVPAPSANKELVK 81

BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_MACFA (DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +   E  K
Sbjct: 65 VCGETVPAPSANKELVK 81

BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1

Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED
Sbjct: 3  TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKED 62

Query: 62 FLGDSVQKNNTGLEP 77
           +   V+ N   LEP
Sbjct: 63 LVEYYVEAN---LEP 74

BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.9e-39
Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL  S QKNN GLEP KQ P VVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh11G017790 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKN-NTGLEPYKQRPAVVA 86
          DFLGDS Q + N GL+P KQ+   +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPYKQRPAVVA 86
          DFL DS Q + N GL+P KQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh11G017790 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPYKQRPAVVA 86
          DFL DS Q + N GL+P KQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0B2R0A8_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-35
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL LGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLMLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPYKQRPAVVA 86
          DFL DS Q + N GL+P KQ+P  VA
Sbjct: 61 DFLADSDQNRRNKGLQPSKQQPLTVA 86

BLAST of CmaCh11G017790 vs. TAIR10
Match: AT2G15910.1 (AT2G15910.1 CSL zinc finger domain-containing protein)

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-34
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRP 82
          DF  D+ +KNN   EP  + P
Sbjct: 61 DFQNDT-KKNN---EPKTRHP 77

BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL DS QKNN GLEP KQ P VVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL  S QKNN GLEP KQ P VVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus])

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKN-NTGLEPYKQRPAVVA 86
          DFLGDS Q + N GL+P KQ+   +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max])

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSVQ-KNNTGLEPYKQRPAVVA 86
          DFL DS Q + N GL+P KQ+P  VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|1009168474|ref|XP_015902678.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba])

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITK+DLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DF G+  +K N GLEP KQ+   VA
Sbjct: 61 DFSGEPDRKTNKGLEPSKQQTVTVA 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DPH3_CRIGR3.3e-1851.95DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1[more]
DPH3_MOUSE4.3e-1851.95DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1[more]
DPH3_PONAB1.6e-1750.65DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1[more]
DPH3_MACFA1.6e-1750.65DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1[more]
DPH3_KLULA1.6e-1754.67Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / C... [more]
Match NameE-valueIdentityDescription
A0A0A0K4W9_CUCSA8.9e-3990.59Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1[more]
I3SPP6_LOTJA3.2e-3684.88Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PEW4_GLYSO5.4e-3684.88DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1[more]
K7LPC5_SOYBN5.4e-3684.88Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1[more]
A0A0B2R0A8_GLYSO1.6e-3583.72DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15910.15.9e-3480.25 CSL zinc finger domain-containing protein[more]
Match NameE-valueIdentityDescription
gi|659109803|ref|XP_008454889.1|2.0e-3991.76PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo][more]
gi|449438452|ref|XP_004137002.1|1.3e-3890.59PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus][more]
gi|388508344|gb|AFK42238.1|4.5e-3684.88unknown [Lotus japonicus][more]
gi|571488375|ref|XP_003537913.2|7.8e-3684.88PREDICTED: diphthamide biosynthesis protein 3 [Glycine max][more]
gi|1009168474|ref|XP_015902678.1|7.8e-3683.53PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G017790.1CmaCh11G017790.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007872Zinc finger, DPH-typePFAMPF05207zf-CSLcoord: 4..58
score: 5.5
IPR007872Zinc finger, DPH-typePROFILEPS51074ZF_DPHcoord: 2..58
score: 23
NoneNo IPR availablePANTHERPTHR21454FAMILY NOT NAMEDcoord: 1..81
score: 2.6
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOG B-RELATEDcoord: 1..81
score: 2.6
NoneNo IPR availableunknownSSF144217CSL zinc fingercoord: 2..72
score: 2.09

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh11G017790CmaCh19G006370Cucurbita maxima (Rimu)cmacmaB149