CmaCh11G017790 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGGTTATCATCAGTCCTAAGGGGGCCTATCTTTACGAGGAGTTGTGCATAAGGTCGGACTCCGTCCATCAACATTGGATATGAGTGCTCTTCATGTGCATGTGGCCATGATGTAGCATAATAATTCTAGCATGCTTAAACCTAATAAAAGAAAGAATTGAATGTGAGTTACACTTTGGAACTAGTTCAATAAAAAAAGCCTAATTTGGAGGCGGTCTCCCGAAATTCAGAGTCCACCAAATCCCTATAGCCCTTACTCAATCTTCTTCGTCTACCTCCGAATTCGTTGGTTGCAGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPYKQRPAVVA
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 3.3e-18 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.3e-18 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17 Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_MACFA (DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17 Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
BLAST of CmaCh11G017790 vs. Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17 Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 8.9e-39 Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 3.2e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 5.4e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TrEMBL
Match: A0A0B2R0A8_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.6e-35 Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1
BLAST of CmaCh11G017790 vs. TAIR10
Match: AT2G15910.1 (AT2G15910.1 CSL zinc finger domain-containing protein) HSP 1 Score: 140.2 bits (352), Expect = 5.9e-34 Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1
BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]) HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39 Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1
BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38 Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 1
BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus]) HSP 1 Score: 158.7 bits (400), Expect = 4.5e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max]) HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
BLAST of CmaCh11G017790 vs. NCBI nr
Match: gi|1009168474|ref|XP_015902678.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba]) HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36 Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|