CmaCh19G006370 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G006370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDiphthamide biosynthesis protein, putative
LocationCma_Chr19 : 6794623 .. 6794880 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACGTACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTCGGAGACTCTGATCACAAGAATAACAAAGGACTTCAGCCCTCCAAGCAACAGCCTATCGTTGTCGCTTGA

mRNA sequence

ATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACGTACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTCGGAGACTCTGATCACAAGAATAACAAAGGACTTCAGCCCTCCAAGCAACAGCCTATCGTTGTCGCTTGA

Coding sequence (CDS)

ATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACGTACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTCGGAGACTCTGATCACAAGAATAACAAAGGACTTCAGCCCTCCAAGCAACAGCCTATCGTTGTCGCTTGA

Protein sequence

MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDHKNNKGLQPSKQQPIVVA
BLAST of CmaCh19G006370 vs. Swiss-Prot
Match: DPH3_DROME (DPH3 homolog OS=Drosophila melanogaster GN=CG14701 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-18
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F
Sbjct: 5  HDEVEIEDFEYDEEEEMYYYPCPCGDRFQISKEELIEGEEVATCPSCSLVIKVIYDPEMF 64

Query: 63 LGDSDHKN 71
            + D ++
Sbjct: 65 KAEEDEES 72

BLAST of CmaCh19G006370 vs. Swiss-Prot
Match: DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF
Sbjct: 5  HDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYDPEDF 64

Query: 63 L 64
          +
Sbjct: 65 V 65

BLAST of CmaCh19G006370 vs. Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L 64
          +
Sbjct: 65 M 65

BLAST of CmaCh19G006370 vs. Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L 64
          +
Sbjct: 65 V 65

BLAST of CmaCh19G006370 vs. Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L 64
          +
Sbjct: 65 M 65

BLAST of CmaCh19G006370 vs. TrEMBL
Match: A0A0A0K4W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-40
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 86
          DFL  S+ KNNKGL+PSKQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh19G006370 vs. TrEMBL
Match: I3SPP6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-39
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKN-NKGLQPSKQQPIVVA 86
          DFLGDSD  + NKGLQPSKQQ + +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmaCh19G006370 vs. TrEMBL
Match: A0A0B2PEW4_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-39
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSD-HKNNKGLQPSKQQPIVVA 86
          DFL DSD ++ NKGLQPSKQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh19G006370 vs. TrEMBL
Match: K7LPC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-39
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSD-HKNNKGLQPSKQQPIVVA 86
          DFL DSD ++ NKGLQPSKQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh19G006370 vs. TrEMBL
Match: A0A0B2R0A8_GLYSO (DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-38
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDL LGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLMLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSD-HKNNKGLQPSKQQPIVVA 86
          DFL DSD ++ NKGLQPSKQQP+ VA
Sbjct: 61 DFLADSDQNRRNKGLQPSKQQPLTVA 86

BLAST of CmaCh19G006370 vs. TAIR10
Match: AT2G15910.1 (AT2G15910.1 CSL zinc finger domain-containing protein)

HSP 1 Score: 139.8 bits (351), Expect = 7.7e-34
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKNNKGLQPSKQQPI 83
          DF  D+  KNN   +P  + P+
Sbjct: 61 DFQNDT-KKNN---EPKTRHPV 78

BLAST of CmaCh19G006370 vs. NCBI nr
Match: gi|659109803|ref|XP_008454889.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 86
          DFL DS+ KNNKGL+PSKQ PIVVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh19G006370 vs. NCBI nr
Match: gi|449438452|ref|XP_004137002.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 86
          DFL  S+ KNNKGL+PSKQ PIVVA
Sbjct: 61 DFLDHSNQKNNKGLEPSKQHPIVVA 85

BLAST of CmaCh19G006370 vs. NCBI nr
Match: gi|388508344|gb|AFK42238.1| (unknown [Lotus japonicus])

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-39
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKN-NKGLQPSKQQPIVVA 86
          DFLGDSD  + NKGLQPSKQQ + +A
Sbjct: 61 DFLGDSDQNHRNKGLQPSKQQTVTIA 86

BLAST of CmaCh19G006370 vs. NCBI nr
Match: gi|571488375|ref|XP_003537913.2| (PREDICTED: diphthamide biosynthesis protein 3 [Glycine max])

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYN+E
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNLE 60

Query: 61 DFLGDSD-HKNNKGLQPSKQQPIVVA 86
          DFL DSD ++ NKGLQPSKQQP+ VA
Sbjct: 61 DFLSDSDQNRPNKGLQPSKQQPLTVA 86

BLAST of CmaCh19G006370 vs. NCBI nr
Match: gi|1009168474|ref|XP_015902678.1| (PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba])

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 1

Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQA+TYPCPCGDLFQITK+DLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 86
          DF G+ D K NKGL+PSKQQ + VA
Sbjct: 61 DFSGEPDRKTNKGLEPSKQQTVTVA 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DPH3_DROME5.6e-1857.35DPH3 homolog OS=Drosophila melanogaster GN=CG14701 PE=3 SV=1[more]
DPH3_CAEEL1.6e-1759.02DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=3 SV=1[more]
DPH3_CRIGR2.8e-1757.38DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1[more]
DPH3_PONAB3.6e-1757.38DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1[more]
DPH3_MOUSE3.6e-1757.38DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K4W9_CUCSA2.8e-4091.76Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075060 PE=4 SV=1[more]
I3SPP6_LOTJA3.1e-3989.53Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PEW4_GLYSO4.0e-3989.53DPH3 like OS=Glycine soja GN=glysoja_031610 PE=4 SV=1[more]
K7LPC5_SOYBN4.0e-3989.53Uncharacterized protein OS=Glycine max GN=GLYMA_11G123600 PE=4 SV=1[more]
A0A0B2R0A8_GLYSO1.2e-3888.37DPH3 like OS=Glycine soja GN=glysoja_010249 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15910.17.7e-3478.05 CSL zinc finger domain-containing protein[more]
Match NameE-valueIdentityDescription
gi|659109803|ref|XP_008454889.1|6.1e-4192.94PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo][more]
gi|449438452|ref|XP_004137002.1|4.0e-4091.76PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis sativus][more]
gi|388508344|gb|AFK42238.1|4.4e-3989.53unknown [Lotus japonicus][more]
gi|571488375|ref|XP_003537913.2|5.7e-3989.53PREDICTED: diphthamide biosynthesis protein 3 [Glycine max][more]
gi|1009168474|ref|XP_015902678.1|1.3e-3887.06PREDICTED: diphthamide biosynthesis protein 3-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G006370.1CmaCh19G006370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007872Zinc finger, DPH-typePFAMPF05207zf-CSLcoord: 4..58
score: 5.5
IPR007872Zinc finger, DPH-typePROFILEPS51074ZF_DPHcoord: 2..58
score: 23
NoneNo IPR availablePANTHERPTHR21454FAMILY NOT NAMEDcoord: 1..83
score: 1.1
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOG B-RELATEDcoord: 1..83
score: 1.1
NoneNo IPR availableunknownSSF144217CSL zinc fingercoord: 2..72
score: 1.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G006370CmaCh11G017790Cucurbita maxima (Rimu)cmacmaB149