CmoCh09G006800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G006800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L18a-1
Location	Cmo_Chr09 : 3375470 .. 3378942 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCGTTCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTGAAGACGAGAGAAAATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGTAACCGCTTCGTCCTCAATTTTTCTCACCTGTTAATCTAGTGTTAGTTGTTTCTTTTGTTTCTTGTGCGATTTGATCGATCTTGCTTTTCCGTTGACTTGAACTACTGATCTCGGTTAAATGCCTTGCGTTGAACTCCAGTAAAGTTGATCTTATCACTTGAATAGCTTAGTTCTGTCCGGAATCTAAAAATTATGATCTACTGGAAAATTTTGTTCCAAGCATGGATGAATGATCCGTAATTGTCATATATTTTGTTTTCTGTATTTCAGTTGGAGTTCCTACCTGTACTAGCAGTTTGTTAAGATTAGATCCTGTATTTTCTTGTTCTGTGAGTGTGCTTTTTATTGGTGTCTGCTTGAAAGTTTATAGTTCAGAATTGAATAATAAGTAGAGTAGGAAGCCACTTTTTAACTCATGATGATTATTATTAACGATCACAATACTATATTATAGTTTATCAGTGTTATTGAATTTGAAGCTTTTTGTATGACGAAATCTCGACAGAAAGTGTGGTTGGATTCTTACTTAATAGACACGTTATTCTCTTTTGATTTTTGAAATACTTGATTTTAGCATTCTGAAATTCGCATGCCTTCTTTCCTTTTTGCATCTCGAGAAGAATATAGGTGAAAAGAATGTTGTGATTTTATACATTTGAGTGACAAGATTTTTGTTATGTACTTGTTCATCATTATAGTTGTATTAACTCTTTGTCTCTCTCTCTGAGATTTGATTTTGCACTATCATATTTTGTTTAGTTTCGTTTGCATCGCTATAATTTTGTGTAACTTCTTCTGGAATATATACCCTTGGATTCGTTTAATATACATCATTTCAAAGACTGAAGTATTAGCTCAATTTTTTAAAATTTATTTTTGAATTCTTTTCCAGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTAAGTTCTCATAATTGTTGGACTTTATCATCATTTACGACAATTACAGTAGCATTATCATCATAAACAAGCCAGATGATATCTTGTGTCCACTATAAGCATTTCAAACTTTCAGTAGTTACATGGTCGGTAATTTATCAGTTCAGAAGAAGATTAAAGTGCTACAGCTTCCATCTAATGAATGAAAACCAATCAGGTTGTAGTTCGGAATGATAGAATTGCTCGTTGTGTCCTGCCTACTCTTTATATCTTTTGCCTAGAATTTTGTGTTTATTTATGAGTTGACTGATCAAATTGATTACGAACCATGTTCTTCAGGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTATTCATAGTTTTTCTGGACCTCTTCAGCTTCATGATGATGTTCTTATTGTTAGTTGAATGACTCTAATACCATGTTAGATGAACACGACTCTCCACAGTAGTATGATATTGTCGACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACCACCAATGGAAACAGTATTCCTTGATTATAAACCCATGATTATAACCTAAATTAGCGGATGTGAGACTTTCATCCAACACCTCCCCTCGAACAAAGTACGCCTCCCCTTAATCGAGCCTTGACTCCTTTTTCTTTTGGAGTCTTCGTCATTTTTTACTATGCCTTCGAGGAGCCTCGACTCTTTTTTCTTTTAGAATCCTTTGTTCGACATCTATTGACATGACTAAGTTTAGGGCATGGCTTTGATACCATGTTAGATGAATGGCTTTGATACCATGTTAGATGAATGGCTCTGATACCATGTTTGATGAATGGCTCTGATACCATGTTTGATGAACACGACTCCCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAAGTCTCACACCAATGGAGAGAGTATTCCTTGATTATAAACCCATGATCATTCCCTAAATTAGTCGATTAGCCGATGTGGGACTTTCATCCAACACTTATCTCATATCTTCTATATAGTTCTGCAATTCTATTTCCTCATAAGAAGTGATTTTTGTGTTATACTTTTTTGCAACTTGCTTAAAGATGTATTGAGTTGAGTTAGGTTGGGTAAGAGGCCTTCGGTAGTGGGTGATTCTAATTTGTGAATAACTAGAACTTTTCATTCTTTAGTTTTAGTAAGTTTTGTTTTTACTTTGTTTCTTTTTCTTTTTCAAATTAAACTGATTTATTACTTGTTATAAAGCATTAACTAGGAGTTTTAAATGTTCTTAAAAACTAAATTACAAAACAACAAAAATTGTTAGTAGCAAAGAAAGATCTCTAAAAATCTTCTTAACTTTTTTTTTTTGTATATTTAATTAGTAAATATTTTTAATATTGCATCACTCATCTAACCAAGTTAGTCTCTAAGTTCAGGCAGGGCATGCTCGGTATCTCAGGGTTTGCGATTCGAACCTTGATAGATGAGCGCCTGGCATTATTTCAATTTAAATTCCTGCATGTATATAACTAATGTTTTTATTGTGCACGTGTGTGAATTTGTTCTTCCTCTAATATAAATTTCTGGATCCGCCATTGTTGAATGCTAATAATTTTACGTTGTATATCAGGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAACCAATACTAAACTAAAAATATTGTATAGTTTGCAAACATGTATGAACAACAAAATCCATGATCTTTGACCTTCACATCTTCAAGATAGTTCCATTGAAATCTGAATTTGTGAGAGCCTATATATACTGCTTAGCGGTTGTTTCCCATGTCGTGCCTAAGAAGTGTAGAATTCTGCAAAATCACGTTATTTGATTTTTCTATGATATGTCCAAAGGTGTGTTATGACTATTCATCTGAAACTCCTCTGTCGGAATGTACCTATCCTTCTGTAAATATATTTCTTCTTTGTTGTTTGGATATGCATTTGAGCTTCAAAACAGAACTCTGTTCCTCGCTGATCAGATTGTGTTGCTCAGCCTGATGATCTTCTAAGGTAAAAGACTTCGTTGCTCACACCTCTATGCAGGCAAGGTAGAAAGATCTATTTATTGATGTGCAT

mRNA sequence

CCGCGTTCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTGAAGACGAGAGAAAATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAACCAATACTAAACTAAAAATATTGTATAGTTTGCAAACATGTATGAACAACAAAATCCATGATCTTTGACCTTCACATCTTCAAGATAGTTCCATTGAAATCTGAATTTGTGAGAGCCTATATATACTGCTTAGCGGTTGTTTCCCATGTCGTGCCTAAGAAGTGTAGAATTCTGCAAAATCACGTTATTTGATTTTTCTATGATATGTCCAAAGGTGTGTTATGACTATTCATCTGAAACTCCTCTGTCGGAATGTACCTATCCTTCTGTAAATATATTTCTTCTTTGTTGTTTGGATATGCATTTGAGCTTCAAAACAGAACTCTGTTCCTCGCTGATCAGATTGTGTTGCTCAGCCTGATGATCTTCTAAGGTAAAAGACTTCGTTGCTCACACCTCTATGCAGGCAAGGTAGAAAGATCTATTTATTGATGTGCAT

Coding sequence (CDS)

ATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAA

Homology

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BLAST of CmoCh09G006800 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-26
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAV 85
           +YGTFQGVAN+P    P  F QP  P    PG    +        +YA G+  V   Y V
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIGAILILCGRVHYREKPGYVACSIA 145
           VE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA ++L   V +REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

Query: 146 AVIATVAIIFGATKGADVW 153
           +V+  +A++ G T   ++W
Sbjct: 140 SVVYLIAVMLGMTGDINIW 158

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BLAST of CmoCh09G006800 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 9.6e-68
Identity = 127/153 (83.01%), Postives = 133/153 (86.93%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPE 60
           MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIGF L A  WY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of CmoCh09G006800 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---VGFPQPTRPPGVSDFDDRS 60
           MS+E+K  + GVVV HHH  NP  P YGTFQGVANYP    +GFPQP  PPG ++    +
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQNP-QPQYGTFQGVANYPQQPVIGFPQPVPPPGATE--PSA 60

Query: 61  QPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILC 120
            P++YAHGYQTV GYAV +GRPVRE RLPCCGIG GWFLFIIGF L A  WY+G  +ILC
Sbjct: 61  PPQYYAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R+  REKPGY+AC+IAAV+ATVAII G TKGAD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

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BLAST of CmoCh09G006800 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.4e-49
Identity = 97/162 (59.88%), Postives = 117/162 (72.22%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---------VGFPQPTRPPGVS 60
           MS+E+      VV HHHH+ +   P YGTFQGVANYPP         +GFPQP  PPGV+
Sbjct: 1   MSEENDKKPAIVVDHHHHQEH-NQPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVA 60

Query: 61  DFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIG 120
           +      P++YA GYQTV GYAV EGRPVRE RLPCCGIG GWFLFIIGF L    WY G
Sbjct: 61  E-PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 120

Query: 121 AILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           A+++LC R+ YREKPGY+AC++AA++AT+AI+ G TKGAD W
Sbjct: 121 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

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BLAST of CmoCh09G006800 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 100/165 (60.61%), Postives = 113/165 (68.48%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPH----YGTFQGVANYPP--------VGFPQPTRPP 60
           M+ EDK  A     HHHH P P  P+    YGTFQGV+NYPP        +GFPQP  PP
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-W 120
           GV D    + P  Y  GYQ V GYAV EGRPVREPRL CCGIG GW LFI+GF L    W
Sbjct: 61  GVGD--SSAPPPPYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           Y+GAI++LC RV YREKPGYVAC +AAV+AT+AIIFG TKGA+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

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BLAST of CmoCh09G006800 vs. TrEMBL
Match: B9SVW7_RICCO (60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47
Identity = 100/172 (58.14%), Postives = 115/172 (66.86%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHH-----------EPNPGHPHYGTFQGVANYPP--------VGF 60
           MS E+K  +  V++ H H           +P P  P YGTFQGVANYPP        +GF
Sbjct: 1   MSDEEKGHSRAVIIDHQHHQYHHQHPQQSQPPPPPPQYGTFQGVANYPPPHPPQHPVIGF 60

Query: 61  PQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGF 120
           PQP  PPG S+      P  Y HGYQTV GYAV EGRPVRE RLPCCGIG GWFLFIIGF
Sbjct: 61  PQPVPPPGASE------PPAYPHGYQTVPGYAVAEGRPVRERRLPCCGIGVGWFLFIIGF 120

Query: 121 ILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            L A  WY+G  ++LC R+  REKPGYVAC+IAAV+AT+AI+ GATKGAD W
Sbjct: 121 FLGAIPWYVGLFILLCARIDPREKPGYVACTIAAVLATIAIVLGATKGADDW 166

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BLAST of CmoCh09G006800 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-41
Identity = 88/160 (55.00%), Postives = 107/160 (66.88%), Query Frame = 1


Query: 3   QEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDFDD 62
           +EDKS           E    H  YGTFQGV+NYPP        GFPQP+ PPGV D   
Sbjct: 5   EEDKSKGFA------SEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYD--- 64

Query: 63  RSQPEHYAHGYQTVTGYA-VVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL 122
            S   +YAHGYQTV  +  V EGRPVR+ RLPCCGIG GWFLFI+GF L A  WY+G  +
Sbjct: 65  -SGAPYYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFI 124

Query: 123 ILCG-RVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           ++ G R+ YREKPGY+AC+IAA++AT+A+I G +KGAD W
Sbjct: 125 MMFGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

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BLAST of CmoCh09G006800 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-37
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 1


Query: 27  YGTFQGVANYPP------------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAV 86
           YGTFQGV  YPP            +G PQP+ PPG    D       Y   +QTV GY V
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPGSPHHD--ISVHQYIQEHQTVAGYPV 75

Query: 87  VEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRVHYREKPGYVACSIA 146
            +GRP R+ RLPCCG+G GWFLFIIGF+L A  WY+G  +++C R+  REKPGYVAC+IA
Sbjct: 76  SQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIA 135

Query: 147 AVIATVAIIFGATKGADVW 153
           AV+AT+ I+FG   G  VW
Sbjct: 136 AVVATITIVFGVMGGRGVW 152

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BLAST of CmoCh09G006800 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 1


Query: 4   EDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP------VGFPQPTRPPGVSDFDDRS 63
           +DK+ +V  V  H H+  P  P    FQGV+NYPP       G+PQP +P          
Sbjct: 6   DDKNRSV--VTDHQHQQQPPPP----FQGVSNYPPQQQPPATGYPQPAQP---------- 65

Query: 64  QPEHYAHGYQTVTGYAVVEG-RPVREPRLPCCGIGYGWFLFIIGFILPATWYIGAILILC 123
               YA GY       VV G RP    R  CCGIG GW LFI+GF     WYIG  L+L 
Sbjct: 66  ----YAQGY-------VVNGVRPTEHGR--CCGIGIGWVLFILGFFFALPWYIGFFLLLF 125

Query: 124 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R + RE+PGY+AC++ AV AT+ +IFG  +G+ VW
Sbjct: 126 SR-NPRERPGYIACAVGAVFATIIVIFGTVRGSGVW 131

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BLAST of CmoCh09G006800 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-23
Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAV 85
           +YGTFQGVAN+P    P  F QP  P    PG    +        +YA G+  V   Y V
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRVHYREKPGYVACSIA 134
           VE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA ++L   V +REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

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BLAST of CmoCh09G006800 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-09
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 85  LPCCGIGYGWFLFIIGFILPATWYIGAILILCGRVHY--REKPGYVACSIAAVIATVAII 143
           LPC G G GWF F++GF+ P  WY+   L L    H   RE+ G  A +IAA+I +VA++
Sbjct: 33  LPCFGFGIGWFSFLLGFVFPFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVALV 92

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BLAST of CmoCh09G006800 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-69
Identity = 130/153 (84.97%), Postives = 135/153 (88.24%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPE 60
           MSQEDKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPV FPQPTRPPG+SD DD SQ +
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  HYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           HYAHGYQ V GYA+VEGRPVREP LPCCGIG GWFLFIIGF L A  WY GAILILCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIAT+AIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

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BLAST of CmoCh09G006800 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 127/153 (83.01%), Postives = 133/153 (86.93%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPE 60
           MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIGF L A  WY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of CmoCh09G006800 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas])

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-51
Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---VGFPQPTRPPGVSDFDDRS 60
           MS+E+K  + GVVV HHH  NP  P YGTFQGVANYP    +GFPQP  PPG ++    +
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQNP-QPQYGTFQGVANYPQQPVIGFPQPVPPPGATE--PSA 60

Query: 61  QPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILC 120
            P++YAHGYQTV GYAV +GRPVRE RLPCCGIG GWFLFIIGF L A  WY+G  +ILC
Sbjct: 61  PPQYYAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R+  REKPGY+AC+IAAV+ATVAII G TKGAD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

[Close]

BLAST of CmoCh09G006800 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis])

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 97/162 (59.88%), Postives = 117/162 (72.22%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---------VGFPQPTRPPGVS 60
           MS+E+      VV HHHH+ +   P YGTFQGVANYPP         +GFPQP  PPGV+
Sbjct: 1   MSEENDKKPAIVVDHHHHQEH-NQPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVA 60

Query: 61  DFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIG 120
           +      P++YA GYQTV GYAV EGRPVRE RLPCCGIG GWFLFIIGF L    WY G
Sbjct: 61  E-PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 120

Query: 121 AILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           A+++LC R+ YREKPGY+AC++AA++AT+AI+ G TKGAD W
Sbjct: 121 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

[Close]

BLAST of CmoCh09G006800 vs. NCBI nr
Match: gi|1012337642|gb|KYP48912.1| (60S ribosomal protein L18a-1 [Cajanus cajan])

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-47
Identity = 100/165 (60.61%), Postives = 113/165 (68.48%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPH----YGTFQGVANYPP--------VGFPQPTRPP 60
           M+ EDK  A     HHHH P P  P+    YGTFQGV+NYPP        +GFPQP  PP
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-W 120
           GV D    + P  Y  GYQ V GYAV EGRPVREPRL CCGIG GW LFI+GF L    W
Sbjct: 61  GVGD--SSAPPPPYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           Y+GAI++LC RV YREKPGYVAC +AAV+AT+AIIFG TKGA+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

The following BLAST results are available for this feature:

BLAST of CmoCh09G006800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R18AL_ARATH	7.6e-26	46.04	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=...	[more]

BLAST of CmoCh09G006800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Y0_CUCSA	9.6e-68	83.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1	[more]
A0A067LCW3_JATCU	2.8e-51	66.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1	[more]
W9QZI1_9ROSA	3.4e-49	59.88	60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1	[more]
A0A151S283_CAJCA	1.4e-47	60.61	60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1	[more]
B9SVW7_RICCO	4.2e-47	58.14	60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 ...	[more]

BLAST of CmoCh09G006800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17080.1	1.8e-41	55.00	Ribosomal protein L18ae family	[more]
AT1G53560.1	7.8e-37	52.52	Ribosomal protein L18ae family	[more]
AT3G14595.1	1.5e-24	42.95	Ribosomal protein L18ae family	[more]
AT1G29970.2	2.9e-23	49.17	60S ribosomal protein L18A-1	[more]
AT1G54217.2	6.9e-09	45.00	Ribosomal protein L18ae family	[more]

BLAST of CmoCh09G006800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103035\|ref\|XP_008452440.1\|	1.5e-69	84.97	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
gi\|449456534\|ref\|XP_004146004.1\|	1.4e-67	83.01	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]	[more]
gi\|802546700\|ref\|XP_012086502.1\|	4.0e-51	66.03	PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]	[more]
gi\|703085474\|ref\|XP_010092747.1\|	4.9e-49	59.88	60S ribosomal protein L18a-1 [Morus notabilis]	[more]
gi\|1012337642\|gb\|KYP48912.1\|	2.1e-47	60.61	60S ribosomal protein L18a-1 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G006800.1	CmoCh09G006800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 62..152 score: 3.1
None	No IPR available	PANTHER	PTHR10052:SF9	SUBFAMILY NOT NAMED	coord: 62..152 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G006800	Cucsa.058170	Cucumber (Gy14) v1	cgycmoB0071
CmoCh09G006800	CmaCh09G006900	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G006800	Cla023290	Watermelon (97103) v1	cmowmB030
CmoCh09G006800	Csa4G621210	Cucumber (Chinese Long) v2	cmocuB016
CmoCh09G006800	MELO3C016688	Melon (DHL92) v3.5.1	cmomeB034
CmoCh09G006800	CSPI04G22290	Wild cucumber (PI 183967)	cmocpiB015
CmoCh09G006800	Lsi04G019560	Bottle gourd (USVL1VR-Ls)	cmolsiB013
CmoCh09G006800	MELO3C016688.2	Melon (DHL92) v3.6.1	cmomedB035
CmoCh09G006800	CsaV3_4G032660	Cucumber (Chinese Long) v3	cmocucB0019
CmoCh09G006800	Cla97C11G223030	Watermelon (97103) v2	cmowmbB009
CmoCh09G006800	Bhi09G002929	Wax gourd	cmowgoB0022
CmoCh09G006800	CsGy4G020800	Cucumber (Gy14) v2	cgybcmoB437
CmoCh09G006800	Carg03090	Silver-seed gourd	carcmoB0865

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G006800	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh09G006800	Cucurbita maxima (Rimu)	cmacmoB432
CmoCh09G006800	Watermelon (Charleston Gray)	cmowcgB009
CmoCh09G006800	Cucurbita pepo (Zucchini)	cmocpeB030
CmoCh09G006800	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G006800	Silver-seed gourd	carcmoB0426