Cucsa.058170 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.058170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L18A
Location	scaffold00614 : 407266 .. 413120 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGAAGAAGAAGATATCATTTAAGTAAAAAATATATATATGTTACACAATCACTTACATCATTCCATTTAATCAAACCCCAATCAAAGGATTGATAATACAGAGTTCATTCCATATAAATTCATACAAGTTTACAATTCGCCTAATTGAACATCCTGTTCCTTCAATGGAACATAATCCCCATGATACACTTCCAAATGGTCAGATAATAAGGGCTTGTCAATATTTTGATGATGATATGATTTGCAAACGAAGTAAAGGATTGTTTGAGCAACAAGACCAAAGAGGAACACTTTGAACAGCAACAAGAAACAAAGAATTCCAAGAACAATTCTCAATCCATAGTACTTGGAACTTCCAAGCACAACCAAAGTCTGAAAAACCAACTGACCCCCAAGAAACAACACAGTAAAAGTAAAGAAAACACCACAAGAAAGCACCATCTTCCCCTTAATCAGTTCCTTACCCTTCAACATTGCTTGAATTCCATACACATCCTCCAAAACGGAGACAACACTCGCCAAATGCCACACAACGCTTATATACACAAACCCTACAACATATGAAACCGAAAGCCCAGAAATTACGAGAACCCCAATTCCACCGAATCCAAAAATTGCAGACCAAAGGACAATCAAAACCCCAAAAGCCATATTGTAAATCAAAACAATAACAAAATTCCATAAGAACGTAACCATCAGCCTTCTCCAAACCTTAGGAACAACGCCAATAACCTTGCTGAAGGTGATTTCCTTACCAGTGTAAACACAGGCGACGGTGTAAACGACGGCCGCCGAGGAAAGGAGAGCGAGGATTAGAAAGAAAGTGAAGTAAGCAGCTTTAAAGAGCCAGAAAGAGATCCACTCTGAAGTGATGATATCGGAGAGTTTGGTGTATTTGGATGAATTTTTAGGGATTGAATTGAGGGAATCTTCGTTTTTCAAGATCTTGAAGAAGAGAAGCTCGGTTACCTGGATGTGAGCTAAGAAGACGACGGTAAGTGGCAAGATTAGGGTTAGGGTAATCTTGCTGAAGATCTTCCTCCATGAGAGAACAATATTGAAGGATTCTGTGAAGATGCCGAAGAAGCCCAGAAATTGAAGGTCTTCTTGCTCTCTATCCATCTCTCTTTCTCTCTTGGGAAGAAGAAGAATCGAAATGAATTTTTGTGAAAAATCAATTTTGAATCTAATTTTCCTAAGATGTCAATGGTAAGTTTTGTTTGCTTTCAAACATTACACGTCATCTATTTGCTTATCTACTTTAATCCTATGGTTTTTTTACAAGAAAAAATTCCAAAGATCAATACCTATGATCCCGTTGTTTCAAATCATGAAGTATGATTGAATGTCATTGTTACAACATTACAAACACGTTAACTGTTTGTATTGTTAGAATTTAGAGAGCACGAGCACGAGCACGAGAACTTCACTTCTTCTTTTAGGTTTAGTTTGATAATCATTTAACTTTTAAAATAAAACATTTAAGCTTAGTTTCTTATTTATATGTTCAAATAATTTTTCTAATGTTTTTCTTTTAAATTTAAGGCCAATTTTAGAAAGGGGAAATTGAAAATGATAAAACTGTTAAAAATATTTACAAAATATAACAAAAATTTGAATTCTATCACCAACTCTCTCTGCCTCTAAACTTTTATAAATACTTTAGTTAATAAGTGTGTTCATAATTTAAATTTCTTGATTTTAATAGTTATTTTTAACATTTAAAATAATAGTATAATTATTAAAAAAAATGATGTAAAAGAAAATTGGATTAAAGTAAAGCATATTTCGGGTAGTGAAAAGTTAATATTTTAAGAATAGAATATTAGTTTTAATATGATGATCACTCCATGTTCTCAATTTGATCCATTTCGCCCTCTACGGTTTCGTTTCTAGAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGTAACCTCTTCTTTCTCATTTTTCCTCACTTGTTAATCTGCTCTTACCTTCTACTTTTGCTTCTTTTGCCATTTCTTCGATCTTATGCTTTTCCGTTGACTTGAACTACTGATCCTTGTTGCTATGTCAAATGTCTTAAGTTGTACTCTACTAAAAGGTTGATCTAATCACTTGAATAACCTCGTTTCGTCCGAATTTGAAAATTATGATCTACTGAACTGCCAAACATGGATTAATCGTCATATATTCTGTTATCTGTAATTTCGTTTGGAATTTTACCTTCAGCTTTCTAGTTCCTGCTAGTACTAGTTTTTTTGTTGAGCTTGAGATTAGATCCTGCCTTCTCTTGTTCTGTAAATGTGTTTTATATTGGGGTCTGCTTGGATGTTTATAATTCAAAATTGAAAGAAATGAAAAAATAGAATAGAGTAGGAAGCCACTTCGAACTTATGATCATACTTAACAACGCTCACAATGAAGTATTGTAGTTTATCAGTGTTATTTACTTTGAAGCTTTTTGTTATGGCACTTTGGTAGGATTCTTAGTATATGTTTAGGAGTGATTTTGTAACAGTGAAAAATAACTTGTATCATGTTCAAGATCACTCTAAAACACGCTTTTAATTGTAATACTATGAAATTTTCCTTTAAAAGGTGTAAAATGAAATATTGAATTGATTTTGAGTTATTAAAAGTGTATTTCAATGTGATTTTGGACATGACAAAAGTGATTTTAACCATTTCAAGATCACTACCAAACATGTTCTTACTTAACAAAAGTTTATTCTCTTTTGACTATTGAAATTCTTGATTTTAGCATTCTGAAATGCGTATGCTCTATTTCCCTTTTGCATTTTGTGAAGAATATGGGTGAAAATAAATGCCATGGTTTTATATATTCATATTTAACCCTTTTTCTCTTTAAAATTTGTTGTTGCACTATAAAATTTTGTTTAGTTTCATTTTGTTGGCTGTAAATTTGTGTAAATTCTTCGAAAATATATACTCTCAGATTTGCTTAACGTATATCAGTACAAAGACAAAAGTTGTAGCTCAAATTTCCTTTTATTTATCTATTTTTGAATTCTTTTCCAGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTAAGTAGCCATAATTTTTGGACTTTATCATCATTTACATTACATTAGCATTGCCATCATAAACAAGCCAGGTGATATCATTATTGCCACAATAAGAGGGCGGATAGAGGGGGTGAGTTGGTTATTATAATTAGTAGTCATTATAGCCTTTGAGTTATAATACTTTGTAGGTTATAACAGTTTGTGTTTGAAGTGTAGATTATTTTAGTTTGAGTGTGAAATAGTAAACATTGTAACAAAAAGAGAAAAATTGTATGTTATAATAGTTGAAAATAATAATTATTATAATTGGAGTTCCAAACATGAAGTGTGGTATTATTATAATAGTCTACTCCACACACTTGGAGTTCGTAGCCCAAACACCTCTAAGCATTTTAAAATGTCACTGGTTATCTGGTCAGAAAGTTATCAATTCATCAGATGATGAGAATGCTACATGATATGAAAGCCCTAGGATTTGAAAATTAGGAATCCAATTGGTGAACCCCTAATATCAAATTCTAAAATCCCCAATTCAATTTCACAATAATCCAAGGGAATGAGTTAGATTTGAATCTCTCTTTGATCAAAGACCAAGAGATAAGGAGAACTAGTTCCTCACTCCAAGTTCGAACATCCTACAAGCAAGTTGATCAAATTTACCTGAATGTTATTGGCATGCAAATTGAGTTAAAAATTGCAAAAGAATGGTGATCAGGCTCTATCACCTACCAGAGAATTTTTATTGATAGAAAATCCTAGATCTTCAAAATATGAAAAACTAACGTGCTGTATTTTGTTTCCATACTTTATACCTAACTTACTGCACTAAACAAAACATAAAAAGTCTATTTTACCCCTAACTCAAAGGAAGGAAATAAAACTCAAATAAACATATATGGGTCCAATAATAAAAGCCCAAAAATAAAGTATGTTTTTGCAAAATAAAATAAATTACAAAACTAAATTGGTTCGAACCTATATCCTCAACTGACTCCAATTGTTGCTTTTAGAATCTCCTCAATTGAGTTCACCTCCTTTTGAATGTGAGAATTCAATGCTGACTTTAGTTTCTTATTGGCTCTTAAACATGTAATTTGTCCTTGAGGTGACGCAAGGGACTCCTGATATATATCACTACAGCTTCCATCTTATGAACTAAAACTAATCAGCTTCTAGATTGGAATGATAGAATTGCTACTGTGTTATGCATTCTTTTCTTTATCTTGCTATTTAAAAATTTCCCAGATTTTTGTGTCTACATATGAGTTGACTGATAAAAAAGAATACTAACTGTGTTTTTCAGGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTCATTATTATTTTAAACTTCTTCAGCTTCATGACGATGTTCTTATATCTCCAATATAGTTCTGCAATAGATTTCATCACAAGAACTGATTTTTCTGTTATATTTCTTTGCAACTTGCCAAAAGATATATTTGGTTAAAGCAGGAGGAGAGGCCTTCGGGAGTCGATGATTGTAATTTGTCAAAAACTAGACCTTGTCGTTCTTTTAGTTTTAGTATCTTGGGCAACGTTTGACAGTAAACAAAACTGATTTGTTACTTGTTTTTTTCTATAAAGATTTATTACTTGTTGAAAGGCTTTAACTAAAAAAATTGTTAGAAAATGAGTTAGTATATAAGTTATCCGGAATAAGTTCATTTATATTTTTTTTTCCTTTTATTCTCTTAAAACTGTTTATTTTCTTAACACTAAATGCCAGAAAATGATCCACGTAGGGGTTAGAGGCCTCTCAATTTTATTAGTAAACACTGTAGGATTTAATAATCTTCTTCACTCATTAACCAAGTTAGCCCGGTACCTCGTTGTTTGCCTGGCACTATTGCATTTTAGATTTCTGCGTTTGATGTTTTTATTATGAAAAAAATGCCCAGCTATTTATAAATTTCTTGATCCACCACCGTTGCAAGCTAATATTATTATGTTGCATGTCAGGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTGAAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCCATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACATTGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTAGCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTAAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATATATTTATTTCTGCTTGTTTGGAATAAGCATTTGAACA

mRNA sequence

tgatgaagaagaagaTATCATTTAAGTAAAAAATATATATATGTTACACAATCACTTACATCATTCCATTTAATCAAACCCCAATCAAAGGATTGATAATACAGAGTTCATTCCATATAAATTCATACAAGTTTACAATTCGCCTAATTGAACATCCTGTTCCTTCAATGGAACATAATCCCCATGATACACTTCCAAATGGTCAGATAATAAGGGCTTGTCAATATTTTGATGATGATATGATTTGCAAACGAAGTAAAGGATTGTTTGAGCAACAAGACCAAAGAGGAACACTTTGAACAGCAACAAGAAACAAAGAATTCCAAGAACAATTCTCAATCCATAGTACTTGGAACTTCCAAGCACAACCAAAGTCTGAAAAACCAACTGACCCCCAAGAAACAACACAGTAAAAGTAAAGAAAACACCACAAGAAAGCACCATCTTCCCCTTAATCAGTTCCTTACCCTTCAACATTGCTTGAATTCCATACACATCCTCCAAAACGGAGACAACACTCGCCAAATGCCACACAACGCTTATATACACAAACCCTACAACATATGAAACCGAAAGCCCAGAAATTACGAGAACCCCAATTCCACCGAATCCAAAAATTGCAGACCAAAGGACAATCAAAACCCCAAAAGCCATATTGTAAATCAAAACAATAACAAAATTCCATAAGAACGTAACCATCAGCCTTCTCCAAACCTTAGGAACAACGCCAATAACCTTGCTGAAGGTGATTTCCTTACCAGTGTAAACACAGGCGACGGTGTAAACGACGGCCGCCGAGGAAAGGAGAGCGAGGATTAGAAAGAAAGTGAAGTAAGCAGCTTTAAAGAGCCAGAAAGAGATCCACTCTGAAGTGATGATATCGGAGAGTTTGGTGTATTTGGATGAATTTTTAGGGATTGAATTGAGGGAATCTTCGTTTTTCAAGATCTTGAAGAAGAGAAGCTCGGTTACCTGGATGTGAGCTAAGAAGACGACGGTAAGTGGCAAGATTAGGGTTAGGGTAATCTTGCTGAAGATCTTCCTCCATGAGAGAACAATATTGAAGGATTCTGTGAAGATGCCGAAGAAGCCCAGAAATTGAAGAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTGAAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCCATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACATTGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTAGCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTAAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATATATTTATTTCTGCTTGTTTGGAATAAGCATTTGAACA

Coding sequence (CDS)

ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAA

Protein sequence

MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW*

Homology

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BLAST of Cucsa.058170 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQAV-PGYAI 85
           +YGTFQGVAN+P    P  F  P    T  PG    +        +YA G+  V P Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIA 145
           VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY GA +++   VD+REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

Query: 146 AVIATVAIIFGATREADVW 154
           +V+  +A++ G T + ++W
Sbjct: 140 SVVYLIAVMLGMTGDINIW 158

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BLAST of Cucsa.058170 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-87
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIATVAIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of Cucsa.058170 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.0e-54
Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPS 60
           MSE++K  + GVVV HHH  N P P YGTFQGVANYP    +GF  P   PG  +   P 
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQN-PQPQYGTFQGVANYPQQPVIGFPQPVPPPGATEPSAPP 60

Query: 61  QYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIIC 120
           QY  YAHGYQ VPGYA+ +GRPVRE RLPCCGIG+GWFLFIIGFFL AIPWY G  +I+C
Sbjct: 61  QY--YAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
            R+D REKPGY+AC+IAAV+ATVAII G T+ AD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

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BLAST of Cucsa.058170 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-51
Identity = 98/162 (60.49%), Postives = 121/162 (74.69%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---------VGFSHPTRLPGVPDS 62
           E DK  A+ VV HHHH+ ++  P YGTFQGVANYPP         +GF  P   PGV + 
Sbjct: 4   ENDKKPAI-VVDHHHHQEHN-QPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVAE- 63

Query: 63  DDPSQYQ--HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAG 122
             PS +   +YA GYQ VPGYA+ EGRPVRE RLPCCGIGIGWFLFIIGFFLA +PWYAG
Sbjct: 64  --PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 123

Query: 123 AILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           A++++C R+DYREKPGY+AC++AA++AT+AI+ G T+ AD W
Sbjct: 124 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

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BLAST of Cucsa.058170 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 99/165 (60.00%), Postives = 115/165 (69.70%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPH----YGTFQGVANYPP--------VGFSHPTRLP 60
           M+++DK  A     HHHH    P P+    YGTFQGV+NYPP        +GF  P   P
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPW 120
           GV DS  P     Y  GYQAVPGYA+ EGRPVREPRL CCGIG GW LFI+GFFLA IPW
Sbjct: 61  GVGDSSAPPP--PYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           Y GAI+++C RVDYREKPGYVAC +AAV+AT+AIIFG T+ A+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

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BLAST of Cucsa.058170 vs. TrEMBL
Match: V4U033_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022163mg PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.9e-48
Identity = 97/168 (57.74%), Postives = 113/168 (67.26%), Query Frame = 1


Query: 1   MSEQDKS--AAVGVVVHHHH---ESNSPHPHYGTFQGVANYPP-----VGFSHPTRLPGV 60
           MSE DK+  A VG   HHHH    S  P P YGTFQGVANYPP     +GF  P   PGV
Sbjct: 43  MSEDDKNRAAVVGHQHHHHHPDQRSPPPPPQYGTFQGVANYPPPQPPAIGFPQPVPPPGV 102

Query: 61  PDSDDPSQYQH-----YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAA 120
                   + H     Y  GYQ VPGYA+ EGRPVRE RLPCCG+G+GW LFI+GFFL A
Sbjct: 103 SGQTSSHLHHHHHSPYYPQGYQTVPGYAVAEGRPVRERRLPCCGLGVGWCLFILGFFLGA 162

Query: 121 IPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           IPWY G  +++C R+D REKPGY+AC+IAAV+AT+AII G T+ AD W
Sbjct: 163 IPWYVGLFVLMCARIDIREKPGYIACTIAAVLATIAIILGVTKGADEW 210

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BLAST of Cucsa.058170 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 177.2 bits (448), Expect = 7.9e-45
Identity = 87/160 (54.37%), Postives = 109/160 (68.12%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDD 62
           E+DKS           E  + H  YGTFQGV+NYPP        GF  P+  PGV DS  
Sbjct: 5   EEDKSKGFA------SEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGA 64

Query: 63  PSQYQHYAHGYQAVPGYA-IVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL 122
           P    +YAHGYQ VP +  + EGRPVR+ RLPCCGIG+GWFLFI+GFFL AIPWY G  +
Sbjct: 65  P----YYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFI 124

Query: 123 IICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           ++ G R+DYREKPGY+AC+IAA++AT+A+I G ++ AD W
Sbjct: 125 MMFGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

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BLAST of Cucsa.058170 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 157.5 bits (397), Expect = 6.5e-39
Identity = 71/137 (51.82%), Postives = 88/137 (64.23%), Query Frame = 1


Query: 27  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVE 86
           YGTFQGV  YPP  + HP     + G+P    P    H       Y   +Q V GY + +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPGSPHHDISVHQYIQEHQTVAGYPVSQ 75

Query: 87  GRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAV 146
           GRP R+ RLPCCG+G+GWFLFIIGF L AIPWY G  +++C R+D REKPGYVAC+IAAV
Sbjct: 76  GRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIAAV 135

Query: 147 IATVAIIFGATREADVW 154
           +AT+ I+FG      VW
Sbjct: 136 VATITIVFGVMGGRGVW 152

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BLAST of Cucsa.058170 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-26
Identity = 60/120 (50.00%), Postives = 74/120 (61.67%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQAV-PGYAI 85
           +YGTFQGVAN+P    P  F  P    T  PG    +        +YA G+  V P Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIA 135
           VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY GA +++   VD+REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

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BLAST of Cucsa.058170 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-25
Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 1


Query: 12  VVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPG 71
           VV  H H+   P P    FQGV+NYPP     P      P +  P   Q YA GY     
Sbjct: 12  VVTDHQHQQQPPPP----FQGVSNYPPQ--QQP------PATGYPQPAQPYAQGY----- 71

Query: 72  YAIVEG-RPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVA 131
             +V G RP    R  CCGIGIGW LFI+GFF A +PWY G  L++  R + RE+PGY+A
Sbjct: 72  --VVNGVRPTEHGR--CCGIGIGWVLFILGFFFA-LPWYIGFFLLLFSR-NPRERPGYIA 131

Query: 132 CSIAAVIATVAIIFGATREADVW 154
           C++ AV AT+ +IFG  R + VW
Sbjct: 132 CAVGAVFATIIVIFGTVRGSGVW 131

[Close]

BLAST of Cucsa.058170 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 85  LPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICG--RVDYREKPGYVACSIAAVIATVAI 144
           LPC G GIGWF F++G F+    WY    L +      D RE+ G  A +IAA+I +VA+
Sbjct: 33  LPCFGFGIGWFSFLLG-FVFPFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVAL 92

[Close]

BLAST of Cucsa.058170 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 2.1e-87
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIATVAIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Cucsa.058170 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 7.1e-80
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQ
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIGFFLAAIPWYAGAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIAT+AIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Cucsa.058170 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas])

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPS 60
           MSE++K  + GVVV HHH  N P P YGTFQGVANYP    +GF  P   PG  +   P 
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQN-PQPQYGTFQGVANYPQQPVIGFPQPVPPPGATEPSAPP 60

Query: 61  QYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIIC 120
           QY  YAHGYQ VPGYA+ +GRPVRE RLPCCGIG+GWFLFIIGFFL AIPWY G  +I+C
Sbjct: 61  QY--YAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
            R+D REKPGY+AC+IAAV+ATVAII G T+ AD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

[Close]

BLAST of Cucsa.058170 vs. NCBI nr
Match: gi|747071859|ref|XP_011082821.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Sesamum indicum])

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 95/137 (69.34%), Postives = 109/137 (79.56%), Query Frame = 1


Query: 15  HHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPG 74
           HH+H  + P P YGTFQGVAN+PP   VGF  P   PG+     P Q Q+YAHGYQAVPG
Sbjct: 8   HHYHPEHPPPPAYGTFQGVANHPPPTAVGFPQPVPPPGISGVPPPPQSQYYAHGYQAVPG 67

Query: 75  YAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVAC 134
           YA+ EGRP+RE RLPCCGIGIGWFLFIIGFFLAAIPWY G +L++C R+D REKPGYVAC
Sbjct: 68  YAVAEGRPLRERRLPCCGIGIGWFLFIIGFFLAAIPWYVGVLLLLCSRIDPREKPGYVAC 127

Query: 135 SIAAVIATVAIIFGATR 149
           +IAAV+AT+A IFG TR
Sbjct: 128 TIAAVLATIAAIFGLTR 144

[Close]

BLAST of Cucsa.058170 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis])

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51
Identity = 98/162 (60.49%), Postives = 121/162 (74.69%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---------VGFSHPTRLPGVPDS 62
           E DK  A+ VV HHHH+ ++  P YGTFQGVANYPP         +GF  P   PGV + 
Sbjct: 4   ENDKKPAI-VVDHHHHQEHN-QPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVAE- 63

Query: 63  DDPSQYQ--HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAG 122
             PS +   +YA GYQ VPGYA+ EGRPVRE RLPCCGIGIGWFLFIIGFFLA +PWYAG
Sbjct: 64  --PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 123

Query: 123 AILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           A++++C R+DYREKPGY+AC++AA++AT+AI+ G T+ AD W
Sbjct: 124 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

The following BLAST results are available for this feature:

BLAST of Cucsa.058170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R18AL_ARATH	1.5e-29	46.76	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=...	[more]

BLAST of Cucsa.058170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Y0_CUCSA	1.4e-87	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1	[more]
A0A067LCW3_JATCU	8.0e-54	65.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1	[more]
W9QZI1_9ROSA	2.2e-51	60.49	60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1	[more]
A0A151S283_CAJCA	7.0e-50	60.00	60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1	[more]
V4U033_9ROSI	2.9e-48	57.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022163mg PE=4 SV=1	[more]

BLAST of Cucsa.058170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17080.1	7.9e-45	54.38	Ribosomal protein L18ae family	[more]
AT1G53560.1	6.5e-39	51.82	Ribosomal protein L18ae family	[more]
AT1G29970.2	3.7e-26	50.00	60S ribosomal protein L18A-1	[more]
AT3G14595.1	4.1e-25	45.45	Ribosomal protein L18ae family	[more]
AT1G54217.2	8.5e-07	42.62	Ribosomal protein L18ae family	[more]

BLAST of Cucsa.058170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456534\|ref\|XP_004146004.1\|	2.1e-87	100.00	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]	[more]
gi\|659103035\|ref\|XP_008452440.1\|	7.1e-80	92.16	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
gi\|802546700\|ref\|XP_012086502.1\|	1.1e-53	65.38	PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]	[more]
gi\|747071859\|ref\|XP_011082821.1\|	2.4e-51	69.34	PREDICTED: 60S ribosomal protein L18a-like protein [Sesamum indicum]	[more]
gi\|703085474\|ref\|XP_010092747.1\|	3.1e-51	60.49	60S ribosomal protein L18a-1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.058170.2	Cucsa.058170.2	mRNA
Cucsa.058170.1	Cucsa.058170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 62..153 score: 3.4
None	No IPR available	PANTHER	PTHR10052:SF9	SUBFAMILY NOT NAMED	coord: 62..153 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.058170	Cla023290	Watermelon (97103) v1	cgywmB047
Cucsa.058170	Csa4G621210	Cucumber (Chinese Long) v2	cgycuB042
Cucsa.058170	MELO3C016688	Melon (DHL92) v3.5.1	cgymeB045
Cucsa.058170	CSPI04G22290	Wild cucumber (PI 183967)	cgycpiB043
Cucsa.058170	CmaCh09G006900	Cucurbita maxima (Rimu)	cgycmaB0076
Cucsa.058170	CmoCh09G006800	Cucurbita moschata (Rifu)	cgycmoB0071
Cucsa.058170	Lsi04G019560	Bottle gourd (USVL1VR-Ls)	cgylsiB047
Cucsa.058170	MELO3C016688.2	Melon (DHL92) v3.6.1	cgymedB045
Cucsa.058170	CsaV3_4G032660	Cucumber (Chinese Long) v3	cgycucB045
Cucsa.058170	Cla97C11G223030	Watermelon (97103) v2	cgywmbB046
Cucsa.058170	Bhi09G002929	Wax gourd	cgywgoB048
Cucsa.058170	Carg03090	Silver-seed gourd	carcgyB0705

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.058170	Cucurbita maxima (Rimu)	cgycmaB0078
Cucsa.058170	Cucurbita moschata (Rifu)	cgycmoB0073
Cucsa.058170	Cucumber (Chinese Long) v2	cgycuB043
Cucsa.058170	Watermelon (Charleston Gray)	cgywcgB047
Cucsa.058170	Cucurbita pepo (Zucchini)	cgycpeB0073
Cucsa.058170	Cucurbita pepo (Zucchini)	cgycpeB0074
Cucsa.058170	Silver-seed gourd	carcgyB0363