CmaCh09G006900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G006900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L18a-1
Location	Cma_Chr09 : 3263075 .. 3265514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTAAATAAGAGAGAAAATGAGCCAGGAAGATAAATCTGCTGCCGTCGGTGTCGTCGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTCAGAACTATGCTCATGGCTATCAAACTGTCACCGGTAACCTCTTCGTCCTCAATTTTTCTCACCTGTTAATCTATTGTTAGTTGTTTCTTTTGTTTCTTGTGCGATTTGATCGATCTTGCTTTTCCGTTGACTTGAACTACTGATCTCGGTTAAATGCCTTGCGTTGAACTCCAGTAAAGTTGATCTTATCACTTGAATAGCTTAGTTCTGTCCGGAATCTAAAAATTATGATCTACTGGAAAATTTTGTGCCAAGCATGGATGAATGATCCGTAGTTGTCATATATTTTGTTATCTGTATTTCAGTTGGAGTTCAACCTTCAGCTTTCTAATTCCTACCAGTACTAGCAGTTTGTTAAGATTAGATCCTGTATTTTCTTGTTCTTTGAGTGTGCTTTGTATTGGTGTCTGCTTGGAAGTTTATAGTTCAGAATTGAATAATAAGTAGAGTAGGAAGCCACTTTTAACTCATGATGATGATTATTAACGATCACAATACTATACTATAGTTTATCAGTGTTATTGAATTTGAAGCTTTTTGTTATGACGAAATCTCGACAAAAAGTGTGGTTGGATTCTTACTTAATAGACACGTGATTCTCTTTTGATTTTTGAAATACTTGATTTTAGCATTCTGAAATTCGCATGCCTTCTTTCCTTTTTGCATCTCGAGAAGAATATAGGTGAAAAGAATGTTGTGGTTTTATACATTTGAGTGACAAGATTTTTGTCATGTGCTTGTTCGTCATTATAGTTGCATTAACACTTTGTCTCTCTCTCTCTCTCTGAGATTTGATTTTGCATTATCATATTTTGTGTAGTTTCGTTGCATTGCTATAATTTTGTGTAACTTTTTCTGGAATATATACCCTTGGATTCGTTTAATCATCATTTCAATGATTGAAGTAGTAGCTCAATTTTTTAAAATTTGTTTTTGAATTCTTTTCCAGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTAAGTTCTCATAATTGTTGGACTTTATCATCATTTACGACAATTACAGTAGCATTATCATCATAAACAAGCCAGATGATATCTTGTGTCCACTATAAGCATTTCAAACTTTCAGTGGTTACATGGTTGGTAAGTTATCAGTTCAGAAGAAGATTAAAGTGCTACAGCTTCCATCTAATGAATGAAAACCAATCAGGTTGTAGTTCGGAATGATAGAATTACTCGTTGTGTCCTGCCTACCCTATATCTTTTGCCCAGAATTTTGTGTTTATTTATGAGTTGACTGATCAAATAGATTACGAACCATGTTCTTCAGGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCTGGATATGTTGCATGCTCAATTGCTGTGAGTAACTTTGATTCTTAGTTTTTTTGGACCTCTTCAGCTTCATGATGATGTTCTTATATCATATCTTCAATATAGTTCTGCAATTCTATTTCCTCATAAGAAGTGATTTTTCTGTTATACTTTTTTGCAACTTGCTTAAAGATGTATTGAGTTGAGTTAGGTTGGGTAAGAGGCCTTCGGTAGTGGGTGATTGTAATTTGTAAATAACTAGAACATTTCATTCTTTTAGTTTTAGTATCTTGAGTTCCGTTTTGACAGTAGTTTTGTTTTTACTTTGTTTCTTTTTCTTTTTCAAACTAAACTGATTTATTACTTGTTATAAAGCATTAACTAGGAGTTTTAAATGTTCTTAAAAACTAAATTACAAAACAACAAAAATTGTTAGTAGCAAAGAAAGATTTCTAAAAATCTTAAGAAAACTTTTTTTTTTTTGTATATTTAATTGGTAAATATTTTTAATATTGCATCACTCATCTAACCAAGTTAGTCTCTAAGTTCAGGCAGGGCATGCTCGGTATCTCAGGGTTTGCGATTCGAATCTTGATAGATGAGCGCCTGGCATTATTTCATTTTAAATTCCTGCATGTATATAACTAATGTTTTTATTGTGCACGTGTGTGAATTTGTTCTTCCTCTAATATAAATTTCTGGATCCGCCATTGTTGAATGCTAATAATTTTACTTTGTATATCAGGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCAACAAAGGGAGCTGATGTCTGGTAA

mRNA sequence

TCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTAAATAAGAGAGAAAATGAGCCAGGAAGATAAATCTGCTGCCGTCGGTGTCGTCGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTCAGAACTATGCTCATGGCTATCAAACTGTCACCGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCTGGATATGTTGCATGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCAACAAAGGGAGCTGATGTCTGGTAA

Coding sequence (CDS)

ATGAGCCAGGAAGATAAATCTGCTGCCGTCGGTGTCGTCGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTCAGAACTATGCTCATGGCTATCAAACTGTCACCGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCTGGATATGTTGCATGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCAACAAAGGGAGCTGATGTCTGGTAA

Protein sequence

MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

Homology

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BLAST of CmaCh09G006900 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-26
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFPQPTRP----PG--VSDFDDRSQPQNYAHGYQTVT-GYAI 85
           +YGTFQGVAN+P    P  F QP  P    PG    +        NYA G+  V   Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIGAILILCGRVHYREKPGYVACSIA 145
           VE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA ++L   V +REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

Query: 146 AVIATVAIIFGATKGADVW 153
           +V+  +A++ G T   ++W
Sbjct: 140 SVVYLIAVMLGMTGDINIW 158

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BLAST of CmaCh09G006900 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-67
Identity = 128/153 (83.66%), Postives = 133/153 (86.93%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQ 60
           MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  NYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           +YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIGF L A  WY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of CmaCh09G006900 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 103/156 (66.03%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---VGFPQPTRPPGVSDFDDRS 60
           MS+E+K  + GVVV HHH  NP  P YGTFQGVANYP    +GFPQP  PPG ++    +
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQNP-QPQYGTFQGVANYPQQPVIGFPQPVPPPGATE--PSA 60

Query: 61  QPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILC 120
            PQ YAHGYQTV GYA+ +GRPVRE RLPCCGIG GWFLFIIGF L A  WY+G  +ILC
Sbjct: 61  PPQYYAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R+  REKPGY+AC+IAAV+ATVAII G TKGAD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

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BLAST of CmaCh09G006900 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 96/162 (59.26%), Postives = 115/162 (70.99%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---------VGFPQPTRPPGVS 60
           MS+E+      VV HHHH+ +   P YGTFQGVANYPP         +GFPQP  PPGV+
Sbjct: 1   MSEENDKKPAIVVDHHHHQEH-NQPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVA 60

Query: 61  DFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIG 120
           +      P  YA GYQTV GYA+ EGRPVRE RLPCCGIG GWFLFIIGF L    WY G
Sbjct: 61  E-PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 120

Query: 121 AILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           A+++LC R+ YREKPGY+AC++AA++AT+AI+ G TKGAD W
Sbjct: 121 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

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BLAST of CmaCh09G006900 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 99/165 (60.00%), Postives = 113/165 (68.48%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPH----YGTFQGVANYPP--------VGFPQPTRPP 60
           M+ EDK  A     HHHH P P  P+    YGTFQGV+NYPP        +GFPQP  PP
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVSDFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-W 120
           GV D    + P  Y  GYQ V GYA+ EGRPVREPRL CCGIG GW LFI+GF L    W
Sbjct: 61  GVGD--SSAPPPPYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           Y+GAI++LC RV YREKPGYVAC +AAV+AT+AIIFG TKGA+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

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BLAST of CmaCh09G006900 vs. TrEMBL
Match: B9SVW7_RICCO (60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47
Identity = 99/172 (57.56%), Postives = 115/172 (66.86%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHH-----------EPNPGHPHYGTFQGVANYPP--------VGF 60
           MS E+K  +  V++ H H           +P P  P YGTFQGVANYPP        +GF
Sbjct: 1   MSDEEKGHSRAVIIDHQHHQYHHQHPQQSQPPPPPPQYGTFQGVANYPPPHPPQHPVIGF 60

Query: 61  PQPTRPPGVSDFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGF 120
           PQP  PPG S+      P  Y HGYQTV GYA+ EGRPVRE RLPCCGIG GWFLFIIGF
Sbjct: 61  PQPVPPPGASE------PPAYPHGYQTVPGYAVAEGRPVRERRLPCCGIGVGWFLFIIGF 120

Query: 121 ILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            L A  WY+G  ++LC R+  REKPGYVAC+IAAV+AT+AI+ GATKGAD W
Sbjct: 121 FLGAIPWYVGLFILLCARIDPREKPGYVACTIAAVLATIAIVLGATKGADDW 166

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BLAST of CmaCh09G006900 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-41
Identity = 87/160 (54.37%), Postives = 106/160 (66.25%), Query Frame = 1


Query: 3   QEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDFDD 62
           +EDKS           E    H  YGTFQGV+NYPP        GFPQP+ PPGV D   
Sbjct: 5   EEDKSKGFA------SEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYD--- 64

Query: 63  RSQPQNYAHGYQTVTGYA-IVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIGAIL 122
            S    YAHGYQTV  +  + EGRPVR+ RLPCCGIG GWFLFI+GF L A  WY+G  +
Sbjct: 65  -SGAPYYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFI 124

Query: 123 ILCGR-VHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           ++ GR + YREKPGY+AC+IAA++AT+A+I G +KGAD W
Sbjct: 125 MMFGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

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BLAST of CmaCh09G006900 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-37
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 1


Query: 27  YGTFQGVANYPP------------VGFPQPTRPPGVSDFDDRSQPQNYAHGYQTVTGYAI 86
           YGTFQGV  YPP            +G PQP+ PPG S   D S  Q Y   +QTV GY +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPG-SPHHDISVHQ-YIQEHQTVAGYPV 75

Query: 87  VEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRVHYREKPGYVACSIA 146
            +GRP R+ RLPCCG+G GWFLFIIGF+L A  WY+G  +++C R+  REKPGYVAC+IA
Sbjct: 76  SQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIA 135

Query: 147 AVIATVAIIFGATKGADVW 153
           AV+AT+ I+FG   G  VW
Sbjct: 136 AVVATITIVFGVMGGRGVW 152

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BLAST of CmaCh09G006900 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-24
Identity = 66/156 (42.31%), Postives = 85/156 (54.49%), Query Frame = 1


Query: 4   EDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP------VGFPQPTRPPGVSDFDDRS 63
           +DK+ +V  V  H H+  P  P    FQGV+NYPP       G+PQP +P          
Sbjct: 6   DDKNRSV--VTDHQHQQQPPPP----FQGVSNYPPQQQPPATGYPQPAQP---------- 65

Query: 64  QPQNYAHGYQTVTGYAIVEG-RPVREPRLPCCGIGYGWFLFIIGFILPATWYIGAILILC 123
               YA GY       +V G RP    R  CCGIG GW LFI+GF     WYIG  L+L 
Sbjct: 66  ----YAQGY-------VVNGVRPTEHGR--CCGIGIGWVLFILGFFFALPWYIGFFLLLF 125

Query: 124 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R + RE+PGY+AC++ AV AT+ +IFG  +G+ VW
Sbjct: 126 SR-NPRERPGYIACAVGAVFATIIVIFGTVRGSGVW 131

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BLAST of CmaCh09G006900 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 107.5 bits (267), Expect = 7.6e-24
Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFPQPTRP----PG--VSDFDDRSQPQNYAHGYQTVT-GYAI 85
           +YGTFQGVAN+P    P  F QP  P    PG    +        NYA G+  V   Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRVHYREKPGYVACSIA 134
           VE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA ++L   V +REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

[Close]

BLAST of CmaCh09G006900 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-09
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 85  LPCCGIGYGWFLFIIGFILPATWYIGAILILCGRVHY--REKPGYVACSIAAVIATVAII 143
           LPC G G GWF F++GF+ P  WY+   L L    H   RE+ G  A +IAA+I +VA++
Sbjct: 33  LPCFGFGIGWFSFLLGFVFPFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVALV 92

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BLAST of CmaCh09G006900 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 2.5e-69
Identity = 131/153 (85.62%), Postives = 135/153 (88.24%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQ 60
           MSQEDKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPV FPQPTRPPG+SD DD SQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  NYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           +YAHGYQ V GYAIVEGRPVREP LPCCGIG GWFLFIIGF L A  WY GAILILCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIAT+AIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

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BLAST of CmaCh09G006900 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.3e-67
Identity = 128/153 (83.66%), Postives = 133/153 (86.93%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQ 60
           MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  NYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120
           +YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIGF L A  WY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of CmaCh09G006900 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas])

HSP 1 Score: 208.8 bits (530), Expect = 6.9e-51
Identity = 103/156 (66.03%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---VGFPQPTRPPGVSDFDDRS 60
           MS+E+K  + GVVV HHH  NP  P YGTFQGVANYP    +GFPQP  PPG ++    +
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQNP-QPQYGTFQGVANYPQQPVIGFPQPVPPPGATE--PSA 60

Query: 61  QPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILC 120
            PQ YAHGYQTV GYA+ +GRPVRE RLPCCGIG GWFLFIIGF L A  WY+G  +ILC
Sbjct: 61  PPQYYAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
            R+  REKPGY+AC+IAAV+ATVAII G TKGAD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

[Close]

BLAST of CmaCh09G006900 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis])

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48
Identity = 96/162 (59.26%), Postives = 115/162 (70.99%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP---------VGFPQPTRPPGVS 60
           MS+E+      VV HHHH+ +   P YGTFQGVANYPP         +GFPQP  PPGV+
Sbjct: 1   MSEENDKKPAIVVDHHHHQEH-NQPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVA 60

Query: 61  DFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-WYIG 120
           +      P  YA GYQTV GYA+ EGRPVRE RLPCCGIG GWFLFIIGF L    WY G
Sbjct: 61  E-PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 120

Query: 121 AILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           A+++LC R+ YREKPGY+AC++AA++AT+AI+ G TKGAD W
Sbjct: 121 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

[Close]

BLAST of CmaCh09G006900 vs. NCBI nr
Match: gi|1012337642|gb|KYP48912.1| (60S ribosomal protein L18a-1 [Cajanus cajan])

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-47
Identity = 99/165 (60.00%), Postives = 113/165 (68.48%), Query Frame = 1


Query: 1   MSQEDKSAAVGVVVHHHHEPNPGHPH----YGTFQGVANYPP--------VGFPQPTRPP 60
           M+ EDK  A     HHHH P P  P+    YGTFQGV+NYPP        +GFPQP  PP
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVSDFDDRSQPQNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPAT-W 120
           GV D    + P  Y  GYQ V GYA+ EGRPVREPRL CCGIG GW LFI+GF L    W
Sbjct: 61  GVGD--SSAPPPPYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW 153
           Y+GAI++LC RV YREKPGYVAC +AAV+AT+AIIFG TKGA+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

The following BLAST results are available for this feature:

BLAST of CmaCh09G006900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R18AL_ARATH	2.0e-26	46.04	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=...	[more]

BLAST of CmaCh09G006900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Y0_CUCSA	1.6e-67	83.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1	[more]
A0A067LCW3_JATCU	4.8e-51	66.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1	[more]
W9QZI1_9ROSA	1.7e-48	59.26	60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1	[more]
A0A151S283_CAJCA	1.4e-47	60.00	60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1	[more]
B9SVW7_RICCO	4.2e-47	57.56	60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 ...	[more]

BLAST of CmaCh09G006900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17080.1	5.2e-41	54.38	Ribosomal protein L18ae family	[more]
AT1G53560.1	7.8e-37	53.96	Ribosomal protein L18ae family	[more]
AT3G14595.1	2.0e-24	42.31	Ribosomal protein L18ae family	[more]
AT1G29970.2	7.6e-24	49.17	60S ribosomal protein L18A-1	[more]
AT1G54217.2	6.9e-09	45.00	Ribosomal protein L18ae family	[more]

BLAST of CmaCh09G006900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103035\|ref\|XP_008452440.1\|	2.5e-69	85.62	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
gi\|449456534\|ref\|XP_004146004.1\|	2.3e-67	83.66	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]	[more]
gi\|802546700\|ref\|XP_012086502.1\|	6.9e-51	66.03	PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]	[more]
gi\|703085474\|ref\|XP_010092747.1\|	2.4e-48	59.26	60S ribosomal protein L18a-1 [Morus notabilis]	[more]
gi\|1012337642\|gb\|KYP48912.1\|	2.1e-47	60.00	60S ribosomal protein L18a-1 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G006900.1	CmaCh09G006900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 62..152 score: 3.9
None	No IPR available	PANTHER	PTHR10052:SF9	SUBFAMILY NOT NAMED	coord: 62..152 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G006900	Cucsa.058170	Cucumber (Gy14) v1	cgycmaB0076
CmaCh09G006900	Cla023290	Watermelon (97103) v1	cmawmB038
CmaCh09G006900	Csa4G621210	Cucumber (Chinese Long) v2	cmacuB025
CmaCh09G006900	MELO3C016688	Melon (DHL92) v3.5.1	cmameB045
CmaCh09G006900	CSPI04G22290	Wild cucumber (PI 183967)	cmacpiB024
CmaCh09G006900	CmoCh09G006800	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G006900	Lsi04G019560	Bottle gourd (USVL1VR-Ls)	cmalsiB025
CmaCh09G006900	CsaV3_4G032660	Cucumber (Chinese Long) v3	cmacucB0032
CmaCh09G006900	Cla97C11G223030	Watermelon (97103) v2	cmawmbB021
CmaCh09G006900	Bhi09G002929	Wax gourd	cmawgoB0028
CmaCh09G006900	CsGy4G020800	Cucumber (Gy14) v2	cgybcmaB470
CmaCh09G006900	Carg03090	Silver-seed gourd	carcmaB0889

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G006900	Cucurbita maxima (Rimu)	cmacmaB054
CmaCh09G006900	Cucurbita maxima (Rimu)	cmacmaB045
CmaCh09G006900	Cucurbita moschata (Rifu)	cmacmoB051
CmaCh09G006900	Cucurbita moschata (Rifu)	cmacmoB041
CmaCh09G006900	Watermelon (Charleston Gray)	cmawcgB016
CmaCh09G006900	Cucurbita pepo (Zucchini)	cmacpeB055
CmaCh09G006900	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G006900	Silver-seed gourd	carcmaB0432