CSPI04G22290 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G22290
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L18A
Location	Chr4 : 20643498 .. 20647675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCGGGTAGTGAAAAGTTAATATTTTAAGAATAGAATATTAGTTTTAATATGATGATCACTCCATGTTCTCAATTTGATCCATTTCGCCCTCTACGGTTTCGTTTCTAGAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGTAACCTCTTCTTTCTCATTTTTCCTCACTTGTTAATCTGCTCTTACCTTTTACTTTTGCTTCTTTTGCCATTTCTTCGATCTTATGCTTTTCCGTTGACTTGAACTACTGATCCTTGTTTCTATGTCAAATGTCTTAAGTTGTACTCTACTAAAAGGTTGATCTAATCACTTGAATAACCTCGTTTCGTCCGAATTTGAAAATTATGATCTACTGAACTGCCAAACATGGATTAATCATCTTTTAATCGTCATATATTCTGTTATCTGTAATTTCGTTTGGAATTTTACCTTCAGCTTTCTAGTTCCTGCTAGTACTAGTTTTTTTGTTGAGCTTGAGATTAGATCCTGCCTTCTCTTGTTCTGTAAATCTGTTTTATATTGGGGTCTGCTTGGAAGTTTATAATTCAAAATTGAAAGAAATGAAAAAATAGAATAGAGTAGGAAGCCACTTCGAACTTATGATCATACTTAACAACGCTCACAATGAAGTATTGTAGTTTATCAGTGTTATTTACTTTGAAGCTTTTTGTTATGGCACTTTGGTAGGATTCTTAGTATATGTTTAGGAGTGATTTTGTAACAGTGAAAAATAACTTGTATCATGTTCAAGATCACTCTAAAACACGCTTTTAATTGTAATACTATGAAATTTTCCTTTAAAAGGTGTAAAATGAAATATTGAATTGATTTTGAGTTATTAAAAGTGTATTTCAATGTGATTTTGGACATGACAAAAGTGATTTTAACCATTTCAAGATCACTACCAAACATGTTCTTACTTAACAAAAGTTTATTCTCTTTTGACTATTGAAATTCTTGATTTTAGCATTCTGAAATGCGTATGCTCTATTTCCCTTTTGCATTTTGAGAAGAATATGGGTGAAAATAAATGCCATGGTTTTATATATTCATATTTAATCCTTTTTCTCTTTAAAATTTGTTGTTGCACTATAAAATTTTGTTTAGTTTCATTTTGTTGGCTGTAAATTTGTGTAAATTCTTCGAAAATATATACTCTCAGATTTGCTTAACGTATATCAGTACAAAGACAAAAGTTGTAGCTCAAATTTCCTTTTATTTATCTATTTTTGAATTCTTTTCCAGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTAAGTAGCCATAATTTTTGGACTTTATCATCATTTACATTACATTAGCATTGCCATCATAAACAAGCCAGGTGATATCATTATTGCCACAATAAGAGGGCAGATAGAGGGGGTGATTTGGTTATTATAATTAGTAGTCATTATAGCCTTTGAGTTATAATACTTTGTAGGTTATAACCGTTTGTGTTTGAAGTGTAGATTATTTTAGTTTGAGTGTGAAATAGTAAACATTCTAACAAAAAGAGAAAAATTGTATGTTATAATAGTTGAAAATAATAATTATTATAATTGGAGTTCCAAACATGAAGTGTGGTATTATTATAATAGTCTACTCCACACACTTGGAGTTCGTAGCCCAAACACCTCTAAGCATTTTAAAATGTCACTGGTTATCTGGTCAGAAAGTTATCAATTCATAAGATGATGAGAATGCTACATGATATGAAAGCCCTAGGATTTGAAAATTAGGAATCCAATTGGTGAACCCCTAATATCAAATTCTAAAATCCCCAATTCAATTTCACAATAATCCAAGGGAATGAGTTAGATTTGAATCTCTCTTTGATCAAAGACCAAGAGATAAGGAGAACTAGTTCCTCACTCCAAGTTCGAACATCCTACAAGCAAGTTGATCAAACTTACCTGAATGTTCTTGGCATGCAAATTGAGTCAAAAATTGCAAAAGAATGGTGATCAGGCTCTATCACCTACCAGAGAATTTTTATTGATAGAAAATCCTAGATCTTCAAAATATGAAAAACTAACGTGCTGTATTTTGTTTCCATACTTTATACCCAACTTACTGCACTAAACAAAACATAAAAAGTCTATTTTACCCCTAACTCAAAGGAAGGAAATAAAACTCAAATAAACATATATGGGTCCAATAATAAAAGCCCAAGAATAAAGTATGTTTTTGCAAAATAAAATAAATTACAAAACTAAATTGGTTCGAACCTATATCCTCAACTGACTCCAATTGTTGCTTTTAGAATCTCCTCAATTGAGTTCACCTCCTTTTGAATGTGAGAATTCAATGCTGACTTTAGTTTCTTATTGGCTCTTAAACATGTAATTTGTCCTTGAGGTGACGCAAGGGACTCCTGATATATATCACTACAGCTTCCATCTTATGAACTAAAACTAATCAGCTTCTAGATTGGAATGATAGAATTGCTACTGTGTTATGCATTCTTTTCTTTATCTTGCTATTTAAAAATTTCCCAGATTTTTGTGTCTACATATGAGTTGACTGATAAAAAAGAATACTAACTGTGTTTTTCAGGTTTATTATTGGTTTCTTCTTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTCATTATTATTTTAAACTTCTTCAGCTTCATGACGATGTTCTTATATCTCCAATATAGTTCTGCAATAGATTTCATCACAAGAACTGATTTTTCTGTTATATTTCTTTGCAACTTGCCAAAAGATATATTTGGTTAAAGCAGGAGGAGAGGCCTTCGGGAGTCGATGATTGTAATTTGTCAAAAACTAGACCTTGTCGTTCTTTTAGTTTTAGTATCTTGGGCAACGTTTGACAGTAAACAAAACTGATTTGTTACTTGTTTTTTTCTATAAAGATTTATTACTTGTTGAAAGGCTTTAACTAAAAGAAATTGTTAGAAAATGAGTTAGTATATAAGTTATCCGGAATAAGTTCATTTATATTTTTTTTTCCCTTTTATTCTCTTAAAACTGTTTATTTTCTTAACACTAAATGCCAGAAAATGATCCACGTAGGGGTTAGAGGCCTCTCAATTTTATTAGTAAACACTGTAGGATTTAATAATCTTCTTCACTCATTAACCAAGTTAGCCCGGTACCTCGTTGTTTGCCTGGCACTATTGCATTTTAGATTTCTGCGTTTGATGTTTTTATTATGAAAAAAATGCCCAGCTATTTATAAATTTCTTGATCCACCACCGTTGCAAGCTAATATTATTATGTTGCATGTCAGGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTGAAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCAATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACATTGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTAGCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTCAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATATATTTATTTCTGCTTGTTCGGAATAAGCATTTGAACATCAAAACAGAAAACTGTTGCACCAATCAGATTTCATGTTCCTCTAGCGAGGTTGCTCAGCCTGATGGATGGTCTTCAAAGGTGAAGACATTTTCACAC

mRNA sequence

ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCTTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAA

Coding sequence (CDS)

ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCTTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAA

Homology

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BLAST of CSPI04G22290 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 66/139 (47.48%), Postives = 88/139 (63.31%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQAV-PGYAI 85
           +YGTFQGVAN+P    P  F  P    T  PG    +        +YA G+  V P Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRVDYREKPGYVACSIA 145
           VE RP+ E  LPCCG+G+GWFLFI+GF F  IPWY GA +++   VD+REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

Query: 146 AVIATVAIIFGATREADVW 154
           +V+  +A++ G T + ++W
Sbjct: 140 SVVYLIAVMLGMTGDINIW 158

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BLAST of CSPI04G22290 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-85
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFF AAIPWYAGAILIICGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIATVAIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of CSPI04G22290 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-52
Identity = 101/156 (64.74%), Postives = 116/156 (74.36%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPS 60
           MSE++K  + GVVV HHH  N P P YGTFQGVANYP    +GF  P   PG  +   P 
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQN-PQPQYGTFQGVANYPQQPVIGFPQPVPPPGATEPSAPP 60

Query: 61  QYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIIC 120
           QY  YAHGYQ VPGYA+ +GRPVRE RLPCCGIG+GWFLFIIGFF  AIPWY G  +I+C
Sbjct: 61  QY--YAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
            R+D REKPGY+AC+IAAV+ATVAII G T+ AD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

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BLAST of CSPI04G22290 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-49
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---------VGFSHPTRLPGVPDS 62
           E DK  A+ VV HHHH+ ++  P YGTFQGVANYPP         +GF  P   PGV + 
Sbjct: 4   ENDKKPAI-VVDHHHHQEHN-QPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVAE- 63

Query: 63  DDPSQYQ--HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAG 122
             PS +   +YA GYQ VPGYA+ EGRPVRE RLPCCGIGIGWFLFIIGFF A +PWYAG
Sbjct: 64  --PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 123

Query: 123 AILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           A++++C R+DYREKPGY+AC++AA++AT+AI+ G T+ AD W
Sbjct: 124 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

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BLAST of CSPI04G22290 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.5e-48
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPH----YGTFQGVANYPP--------VGFSHPTRLP 60
           M+++DK  A     HHHH    P P+    YGTFQGV+NYPP        +GF  P   P
Sbjct: 1   MTDEDKPKAFSADHHHHHPPPPPQPYPAAQYGTFQGVSNYPPPPPQQHPAIGFPQPVPPP 60

Query: 61  GVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPW 120
           GV DS  P     Y  GYQAVPGYA+ EGRPVREPRL CCGIG GW LFI+GFF A IPW
Sbjct: 61  GVGDSSAPPP--PYYSGYQAVPGYAVAEGRPVREPRLGCCGIGCGWCLFILGFFLAGIPW 120

Query: 121 YAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           Y GAI+++C RVDYREKPGYVAC +AAV+AT+AIIFG T+ A+ W
Sbjct: 121 YVGAIIMLCSRVDYREKPGYVACIVAAVLATIAIIFGVTKGAEDW 163

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BLAST of CSPI04G22290 vs. TrEMBL
Match: V4U033_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022163mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-46
Identity = 96/168 (57.14%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 1   MSEQDKS--AAVGVVVHHHH---ESNSPHPHYGTFQGVANYPP-----VGFSHPTRLPGV 60
           MSE DK+  A VG   HHHH    S  P P YGTFQGVANYPP     +GF  P   PGV
Sbjct: 43  MSEDDKNRAAVVGHQHHHHHPDQRSPPPPPQYGTFQGVANYPPPQPPAIGFPQPVPPPGV 102

Query: 61  PDSDDPSQYQH-----YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAA 120
                   + H     Y  GYQ VPGYA+ EGRPVRE RLPCCG+G+GW LFI+GFF  A
Sbjct: 103 SGQTSSHLHHHHHSPYYPQGYQTVPGYAVAEGRPVRERRLPCCGLGVGWCLFILGFFLGA 162

Query: 121 IPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           IPWY G  +++C R+D REKPGY+AC+IAAV+AT+AII G T+ AD W
Sbjct: 163 IPWYVGLFVLMCARIDIREKPGYIACTIAAVLATIAIILGVTKGADEW 210

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BLAST of CSPI04G22290 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-43
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDD 62
           E+DKS           E  + H  YGTFQGV+NYPP        GF  P+  PGV DS  
Sbjct: 5   EEDKSKGFA------SEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGA 64

Query: 63  PSQYQHYAHGYQAVPGYA-IVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL 122
           P    +YAHGYQ VP +  + EGRPVR+ RLPCCGIG+GWFLFI+GFF  AIPWY G  +
Sbjct: 65  P----YYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFI 124

Query: 123 IICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           ++ G R+DYREKPGY+AC+IAA++AT+A+I G ++ AD W
Sbjct: 125 MMFGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

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BLAST of CSPI04G22290 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 154.1 bits (388), Expect = 7.2e-38
Identity = 70/137 (51.09%), Postives = 87/137 (63.50%), Query Frame = 1


Query: 27  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVE 86
           YGTFQGV  YPP  + HP     + G+P    P    H       Y   +Q V GY + +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPGSPHHDISVHQYIQEHQTVAGYPVSQ 75

Query: 87  GRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAV 146
           GRP R+ RLPCCG+G+GWFLFIIGF   AIPWY G  +++C R+D REKPGYVAC+IAAV
Sbjct: 76  GRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIAAV 135

Query: 147 IATVAIIFGATREADVW 154
           +AT+ I+FG      VW
Sbjct: 136 VATITIVFGVMGGRGVW 152

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BLAST of CSPI04G22290 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-26
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 26  HYGTFQGVANYP----PVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQAV-PGYAI 85
           +YGTFQGVAN+P    P  F  P    T  PG    +        +YA G+  V P Y +
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVVPDYTV 79

Query: 86  VEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRVDYREKPGYVACSIA 135
           VE RP+ E  LPCCG+G+GWFLFI+GF F  IPWY GA +++   VD+REK GYVACSIA
Sbjct: 80  VEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

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BLAST of CSPI04G22290 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-24
Identity = 66/143 (46.15%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 12  VVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPG 71
           VV  H H+   P P    FQGV+NYPP     P      P +  P   Q YA GY     
Sbjct: 12  VVTDHQHQQQPPPP----FQGVSNYPPQ--QQP------PATGYPQPAQPYAQGY----- 71

Query: 72  YAIVEG-RPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRVDYREKPGYVA 131
             +V G RP    R  CCGIGIGW LFI+GFFFA +PWY G  L++  R + RE+PGY+A
Sbjct: 72  --VVNGVRPTEHGR--CCGIGIGWVLFILGFFFA-LPWYIGFFLLLFSR-NPRERPGYIA 131

Query: 132 CSIAAVIATVAIIFGATREADVW 154
           C++ AV AT+ +IFG  R + VW
Sbjct: 132 CAVGAVFATIIVIFGTVRGSGVW 131

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BLAST of CSPI04G22290 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 85  LPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICG--RVDYREKPGYVACSIAAVIATVAI 144
           LPC G GIGWF F++GF F    WY    L +      D RE+ G  A +IAA+I +VA+
Sbjct: 33  LPCFGFGIGWFSFLLGFVF-PFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVAL 92

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BLAST of CSPI04G22290 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.9e-85
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFF AAIPWYAGAILIICGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIATVAIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

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BLAST of CSPI04G22290 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 6.7e-78
Identity = 140/153 (91.50%), Postives = 145/153 (94.77%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60
           MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQ
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRV 120
           HYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIGFF AAIPWYAGAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           DYREKPGYVACSIAAVIAT+AIIFGATREADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of CSPI04G22290 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas])

HSP 1 Score: 211.8 bits (538), Expect = 8.2e-52
Identity = 101/156 (64.74%), Postives = 116/156 (74.36%), Query Frame = 1


Query: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPS 60
           MSE++K  + GVVV HHH  N P P YGTFQGVANYP    +GF  P   PG  +   P 
Sbjct: 1   MSEEEKGQSRGVVVDHHHHQN-PQPQYGTFQGVANYPQQPVIGFPQPVPPPGATEPSAPP 60

Query: 61  QYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIIC 120
           QY  YAHGYQ VPGYA+ +GRPVRE RLPCCGIG+GWFLFIIGFF  AIPWY G  +I+C
Sbjct: 61  QY--YAHGYQTVPGYAVADGRPVREHRLPCCGIGLGWFLFIIGFFLGAIPWYVGLFIILC 120

Query: 121 GRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
            R+D REKPGY+AC+IAAV+ATVAII G T+ AD W
Sbjct: 121 ARIDPREKPGYIACTIAAVLATVAIILGVTKGADDW 153

[Close]

BLAST of CSPI04G22290 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis])

HSP 1 Score: 203.4 bits (516), Expect = 2.9e-49
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 1


Query: 3   EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP---------VGFSHPTRLPGVPDS 62
           E DK  A+ VV HHHH+ ++  P YGTFQGVANYPP         +GF  P   PGV + 
Sbjct: 4   ENDKKPAI-VVDHHHHQEHN-QPQYGTFQGVANYPPPRPPHHQPAIGFPQPVPPPGVAE- 63

Query: 63  DDPSQYQ--HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAG 122
             PS +   +YA GYQ VPGYA+ EGRPVRE RLPCCGIGIGWFLFIIGFF A +PWYAG
Sbjct: 64  --PSAHHPDYYARGYQTVPGYAVAEGRPVRERRLPCCGIGIGWFLFIIGFFLAGVPWYAG 123

Query: 123 AILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW 154
           A++++C R+DYREKPGY+AC++AA++AT+AI+ G T+ AD W
Sbjct: 124 ALILLCSRIDYREKPGYIACTVAAILATIAIVLGVTKGADDW 160

[Close]

BLAST of CSPI04G22290 vs. NCBI nr
Match: gi|747071859|ref|XP_011082821.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Sesamum indicum])

HSP 1 Score: 203.0 bits (515), Expect = 3.8e-49
Identity = 94/137 (68.61%), Postives = 108/137 (78.83%), Query Frame = 1


Query: 15  HHHHESNSPHPHYGTFQGVANYPP---VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPG 74
           HH+H  + P P YGTFQGVAN+PP   VGF  P   PG+     P Q Q+YAHGYQAVPG
Sbjct: 8   HHYHPEHPPPPAYGTFQGVANHPPPTAVGFPQPVPPPGISGVPPPPQSQYYAHGYQAVPG 67

Query: 75  YAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILIICGRVDYREKPGYVAC 134
           YA+ EGRP+RE RLPCCGIGIGWFLFIIGFF AAIPWY G +L++C R+D REKPGYVAC
Sbjct: 68  YAVAEGRPLRERRLPCCGIGIGWFLFIIGFFLAAIPWYVGVLLLLCSRIDPREKPGYVAC 127

Query: 135 SIAAVIATVAIIFGATR 149
           +IAAV+AT+A IFG TR
Sbjct: 128 TIAAVLATIAAIFGLTR 144

The following BLAST results are available for this feature:

BLAST of CSPI04G22290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R18AL_ARATH	1.5e-29	47.48	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=...	[more]

BLAST of CSPI04G22290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Y0_CUCSA	1.3e-85	99.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1	[more]
A0A067LCW3_JATCU	5.7e-52	64.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1	[more]
W9QZI1_9ROSA	2.0e-49	59.88	60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1	[more]
A0A151S283_CAJCA	6.5e-48	59.39	60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1	[more]
V4U033_9ROSI	2.7e-46	57.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022163mg PE=4 SV=1	[more]

BLAST of CSPI04G22290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17080.1	3.3e-43	53.75	Ribosomal protein L18ae family	[more]
AT1G53560.1	7.2e-38	51.09	Ribosomal protein L18ae family	[more]
AT1G29970.2	3.7e-26	50.83	60S ribosomal protein L18A-1	[more]
AT3G14595.1	2.6e-24	46.15	Ribosomal protein L18ae family	[more]
AT1G54217.2	1.9e-06	44.26	Ribosomal protein L18ae family	[more]

BLAST of CSPI04G22290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456534\|ref\|XP_004146004.1\|	1.9e-85	99.35	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]	[more]
gi\|659103035\|ref\|XP_008452440.1\|	6.7e-78	91.50	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
gi\|802546700\|ref\|XP_012086502.1\|	8.2e-52	64.74	PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]	[more]
gi\|703085474\|ref\|XP_010092747.1\|	2.9e-49	59.88	60S ribosomal protein L18a-1 [Morus notabilis]	[more]
gi\|747071859\|ref\|XP_011082821.1\|	3.8e-49	68.61	PREDICTED: 60S ribosomal protein L18a-like protein [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22290.1	CSPI04G22290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 62..153 score: 2.6
None	No IPR available	PANTHER	PTHR10052:SF9	SUBFAMILY NOT NAMED	coord: 62..153 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G22290	Cla023290	Watermelon (97103) v1	cpiwmB356
CSPI04G22290	Csa4G621210	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G22290	MELO3C016688	Melon (DHL92) v3.5.1	cpimeB303
CSPI04G22290	Lsi04G019560	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G22290	MELO3C016688.2	Melon (DHL92) v3.6.1	cpimedB297
CSPI04G22290	CsaV3_4G032660	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G22290	Cla97C11G223030	Watermelon (97103) v2	cpiwmbB286
CSPI04G22290	Bhi09G002929	Wax gourd	cpiwgoB421
CSPI04G22290	Cucsa.058170	Cucumber (Gy14) v1	cgycpiB043
CSPI04G22290	CmaCh09G006900	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G22290	CmoCh09G006800	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G22290	CsGy4G020800	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G22290	Carg03090	Silver-seed gourd	carcpiB0667

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G22290	Cucurbita pepo (Zucchini)	cpecpiB567
CSPI04G22290	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G22290	Bottle gourd (USVL1VR-Ls)	cpilsiB290
CSPI04G22290	Silver-seed gourd	carcpiB0345
CSPI04G22290	Cucumber (Chinese Long) v3	cpicucB217
CSPI04G22290	Cucurbita maxima (Rimu)	cmacpiB477
CSPI04G22290	Cucurbita moschata (Rifu)	cmocpiB466
CSPI04G22290	Watermelon (Charleston Gray)	cpiwcgB289