CmoCh09G006800.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCGCGTTCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTGAAGACGAGAGAAAATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGTAACCGCTTCGTCCTCAATTTTTCTCACCTGTTAATCTAGTGTTAGTTGTTTCTTTTGTTTCTTGTGCGATTTGATCGATCTTGCTTTTCCGTTGACTTGAACTACTGATCTCGGTTAAATGCCTTGCGTTGAACTCCAGTAAAGTTGATCTTATCACTTGAATAGCTTAGTTCTGTCCGGAATCTAAAAATTATGATCTACTGGAAAATTTTGTTCCAAGCATGGATGAATGATCCGTAATTGTCATATATTTTGTTTTCTGTATTTCAGTTGGAGTTCCTACCTGTACTAGCAGTTTGTTAAGATTAGATCCTGTATTTTCTTGTTCTGTGAGTGTGCTTTTTATTGGTGTCTGCTTGAAAGTTTATAGTTCAGAATTGAATAATAAGTAGAGTAGGAAGCCACTTTTTAACTCATGATGATTATTATTAACGATCACAATACTATATTATAGTTTATCAGTGTTATTGAATTTGAAGCTTTTTGTATGACGAAATCTCGACAGAAAGTGTGGTTGGATTCTTACTTAATAGACACGTTATTCTCTTTTGATTTTTGAAATACTTGATTTTAGCATTCTGAAATTCGCATGCCTTCTTTCCTTTTTGCATCTCGAGAAGAATATAGGTGAAAAGAATGTTGTGATTTTATACATTTGAGTGACAAGATTTTTGTTATGTACTTGTTCATCATTATAGTTGTATTAACTCTTTGTCTCTCTCTCTGAGATTTGATTTTGCACTATCATATTTTGTTTAGTTTCGTTTGCATCGCTATAATTTTGTGTAACTTCTTCTGGAATATATACCCTTGGATTCGTTTAATATACATCATTTCAAAGACTGAAGTATTAGCTCAATTTTTTAAAATTTATTTTTGAATTCTTTTCCAGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTAAGTTCTCATAATTGTTGGACTTTATCATCATTTACGACAATTACAGTAGCATTATCATCATAAACAAGCCAGATGATATCTTGTGTCCACTATAAGCATTTCAAACTTTCAGTAGTTACATGGTCGGTAATTTATCAGTTCAGAAGAAGATTAAAGTGCTACAGCTTCCATCTAATGAATGAAAACCAATCAGGTTGTAGTTCGGAATGATAGAATTGCTCGTTGTGTCCTGCCTACTCTTTATATCTTTTGCCTAGAATTTTGTGTTTATTTATGAGTTGACTGATCAAATTGATTACGAACCATGTTCTTCAGGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTATTCATAGTTTTTCTGGACCTCTTCAGCTTCATGATGATGTTCTTATTGTTAGTTGAATGACTCTAATACCATGTTAGATGAACACGACTCTCCACAGTAGTATGATATTGTCGACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACCACCAATGGAAACAGTATTCCTTGATTATAAACCCATGATTATAACCTAAATTAGCGGATGTGAGACTTTCATCCAACACCTCCCCTCGAACAAAGTACGCCTCCCCTTAATCGAGCCTTGACTCCTTTTTCTTTTGGAGTCTTCGTCATTTTTTACTATGCCTTCGAGGAGCCTCGACTCTTTTTTCTTTTAGAATCCTTTGTTCGACATCTATTGACATGACTAAGTTTAGGGCATGGCTTTGATACCATGTTAGATGAATGGCTTTGATACCATGTTAGATGAATGGCTCTGATACCATGTTTGATGAATGGCTCTGATACCATGTTTGATGAACACGACTCCCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAAGTCTCACACCAATGGAGAGAGTATTCCTTGATTATAAACCCATGATCATTCCCTAAATTAGTCGATTAGCCGATGTGGGACTTTCATCCAACACTTATCTCATATCTTCTATATAGTTCTGCAATTCTATTTCCTCATAAGAAGTGATTTTTGTGTTATACTTTTTTGCAACTTGCTTAAAGATGTATTGAGTTGAGTTAGGTTGGGTAAGAGGCCTTCGGTAGTGGGTGATTCTAATTTGTGAATAACTAGAACTTTTCATTCTTTAGTTTTAGTAAGTTTTGTTTTTACTTTGTTTCTTTTTCTTTTTCAAATTAAACTGATTTATTACTTGTTATAAAGCATTAACTAGGAGTTTTAAATGTTCTTAAAAACTAAATTACAAAACAACAAAAATTGTTAGTAGCAAAGAAAGATCTCTAAAAATCTTCTTAACTTTTTTTTTTTGTATATTTAATTAGTAAATATTTTTAATATTGCATCACTCATCTAACCAAGTTAGTCTCTAAGTTCAGGCAGGGCATGCTCGGTATCTCAGGGTTTGCGATTCGAACCTTGATAGATGAGCGCCTGGCATTATTTCAATTTAAATTCCTGCATGTATATAACTAATGTTTTTATTGTGCACGTGTGTGAATTTGTTCTTCCTCTAATATAAATTTCTGGATCCGCCATTGTTGAATGCTAATAATTTTACGTTGTATATCAGGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAACCAATACTAAACTAAAAATATTGTATAGTTTGCAAACATGTATGAACAACAAAATCCATGATCTTTGACCTTCACATCTTCAAGATAGTTCCATTGAAATCTGAATTTGTGAGAGCCTATATATACTGCTTAGCGGTTGTTTCCCATGTCGTGCCTAAGAAGTGTAGAATTCTGCAAAATCACGTTATTTGATTTTTCTATGATATGTCCAAAGGTGTGTTATGACTATTCATCTGAAACTCCTCTGTCGGAATGTACCTATCCTTCTGTAAATATATTTCTTCTTTGTTGTTTGGATATGCATTTGAGCTTCAAAACAGAACTCTGTTCCTCGCTGATCAGATTGTGTTGCTCAGCCTGATGATCTTCTAAGGTAAAAGACTTCGTTGCTCACACCTCTATGCAGGCAAGGTAGAAAGATCTATTTATTGATGTGCAT CCGCGTTCCGAATTCTGATCCATTTCGCCTCGGGTTTTGTTTCTGAAGACGAGAGAAAATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAACCAATACTAAACTAAAAATATTGTATAGTTTGCAAACATGTATGAACAACAAAATCCATGATCTTTGACCTTCACATCTTCAAGATAGTTCCATTGAAATCTGAATTTGTGAGAGCCTATATATACTGCTTAGCGGTTGTTTCCCATGTCGTGCCTAAGAAGTGTAGAATTCTGCAAAATCACGTTATTTGATTTTTCTATGATATGTCCAAAGGTGTGTTATGACTATTCATCTGAAACTCCTCTGTCGGAATGTACCTATCCTTCTGTAAATATATTTCTTCTTTGTTGTTTGGATATGCATTTGAGCTTCAAAACAGAACTCTGTTCCTCGCTGATCAGATTGTGTTGCTCAGCCTGATGATCTTCTAAGGTAAAAGACTTCGTTGCTCACACCTCTATGCAGGCAAGGTAGAAAGATCTATTTATTGATGTGCAT ATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTTGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGACGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCTACAAAGGGAGCTGATGTCTGGTAA
BLAST of CmoCh09G006800.1 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2) HSP 1 Score: 118.2 bits (295), Expect = 7.6e-26 Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 9.6e-68 Identity = 127/153 (83.01%), Postives = 133/153 (86.93%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51 Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 3.4e-49 Identity = 97/162 (59.88%), Postives = 117/162 (72.22%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47 Identity = 100/165 (60.61%), Postives = 113/165 (68.48%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TrEMBL
Match: B9SVW7_RICCO (60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47 Identity = 100/172 (58.14%), Postives = 115/172 (66.86%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family) HSP 1 Score: 166.0 bits (419), Expect = 1.8e-41 Identity = 88/160 (55.00%), Postives = 107/160 (66.88%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family) HSP 1 Score: 150.6 bits (379), Expect = 7.8e-37 Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family) HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24 Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1) HSP 1 Score: 105.5 bits (262), Expect = 2.9e-23 Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family) HSP 1 Score: 57.8 bits (138), Expect = 6.9e-09 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]) HSP 1 Score: 270.8 bits (691), Expect = 1.5e-69 Identity = 130/153 (84.97%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]) HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67 Identity = 127/153 (83.01%), Postives = 133/153 (86.93%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]) HSP 1 Score: 209.5 bits (532), Expect = 4.0e-51 Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis]) HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49 Identity = 97/162 (59.88%), Postives = 117/162 (72.22%), Query Frame = 1
BLAST of CmoCh09G006800.1 vs. NCBI nr
Match: gi|1012337642|gb|KYP48912.1| (60S ribosomal protein L18a-1 [Cajanus cajan]) HSP 1 Score: 197.2 bits (500), Expect = 2.1e-47 Identity = 100/165 (60.61%), Postives = 113/165 (68.48%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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