CmoCh08G002630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lipid transfer protein
Location	Cmo_Chr08 : 1625832 .. 1626146 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAACCACGGCGACGACGATGGTGATGGCAATGACGATGGTGATGCTAGTGAGTTTATCGGGGGCATTGGCGGAAATGGACGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCATGCCCTACCGAGCTGCCACCGGCCGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCACTCGTGCTGCCCTCGCTCGGGATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCGTGCTGA

mRNA sequence

ATGGCTCAAACCACGGCGACGACGATGGTGATGGCAATGACGATGGTGATGCTAGTGAGTTTATCGGGGGCATTGGCGGAAATGGACGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCATGCCCTACCGAGCTGCCACCGGCCGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCACTCGTGCTGCCCTCGCTCGGGATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCGTGCTGA

Coding sequence (CDS)

ATGGCTCAAACCACGGCGACGACGATGGTGATGGCAATGACGATGGTGATGCTAGTGAGTTTATCGGGGGCATTGGCGGAAATGGACGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCATGCCCTACCGAGCTGCCACCGGCCGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCACTCGTGCTGCCCTCGCTCGGGATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCGTGCTGA

Homology

[Close]

BLAST of CmoCh08G002630 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 1   MAQTTATTMVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCD 60
           MA   A  ++MAM ++M + +  ++A +D+CG+SQD L  CKP V+K  PT  P   CC 
Sbjct: 1   MASKKAAMVMMAMIVIMAMLVDTSVA-IDLCGMSQDELNECKPAVSKENPTS-PSQPCCT 60

Query: 61  GLSKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            L  ADF C C YK+S  L S G+DP+LA ALP +C L N+P+C
Sbjct: 61  ALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmoCh08G002630 vs. TrEMBL
Match: A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 10  VMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 69
           V  M +++LV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ LS ADF C
Sbjct: 7   VTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDC 66

Query: 70  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           FC YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 67  FCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 101

[Close]

BLAST of CmoCh08G002630 vs. TrEMBL
Match: A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 28  MDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHSLVLPSLGIDPD 87
           MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S +LPSLGIDPD
Sbjct: 3   MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDPD 62

Query: 88  LALALPAKCSLPNSPSC 105
           LALALPAKC++PN   C
Sbjct: 63  LALALPAKCNIPNPTEC 78

[Close]

BLAST of CmoCh08G002630 vs. TrEMBL
Match: A0A022S1I9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 8   TMVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDG-LSKAD 67
           T V  +   M+V L+GA A MD+C V++DGLTACKP V +P P E P   CCD  +S AD
Sbjct: 7   TKVAVLVAAMVVFLAGAKA-MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVVSGAD 66

Query: 68  FGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
             C C+YK+  +LPSLGIDPDLALALPAKC++PN   C
Sbjct: 67  LKCLCSYKNLFMLPSLGIDPDLALALPAKCNIPNPTEC 102

[Close]

BLAST of CmoCh08G002630 vs. TrEMBL
Match: A0A164Z5V2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-19
Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 9   MVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFG 68
           ++  + +VM+V++   +  +D+C +S+DGL ACKP VT P P + P A CC  LS AD  
Sbjct: 4   LIKVVWLVMVVAMVVKMEAIDLCNMSEDGLMACKPAVTAPEPAD-PTAECCQALSGADLS 63

Query: 69  CFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           C C+Y++S VLPSLGIDPDLALALP+KC+L    +C
Sbjct: 64  CLCSYRNSFVLPSLGIDPDLALALPSKCNLTPPANC 98

[Close]

BLAST of CmoCh08G002630 vs. TrEMBL
Match: A0A059AVL1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00727 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-19
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 9   MVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFG 68
           +V+    V+ V+L+G    + +C +S D LTACKP VTKP P E P   CC+GLS AD  
Sbjct: 8   LVLVAVAVVAVALAGGSEAITLCKMSDDQLTACKPAVTKPDPAE-PTKECCEGLSGADLS 67

Query: 69  CFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           C C+YK+S +LP+LGIDPDLA+ LPAKC L    +C
Sbjct: 68  CLCSYKNSAILPALGIDPDLAMGLPAKCGLTPPANC 102

[Close]

BLAST of CmoCh08G002630 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 6.6e-19
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 1   MAQTTATTMVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCD 60
           MA   A  ++MAM ++M + +  ++A +D+CG+SQD L  CKP V+K  PT  P   CC 
Sbjct: 1   MASKKAAMVMMAMIVIMAMLVDTSVA-IDLCGMSQDELNECKPAVSKENPTS-PSQPCCT 60

Query: 61  GLSKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            L  ADF C C YK+S  L S G+DP+LA ALP +C L N+P+C
Sbjct: 61  ALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmoCh08G002630 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.8e-15
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 4   TTATTMVMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLS 63
           T+    +M + MVM   +      +D+CG++Q  L  C P V+K  PT  P   CC+ L 
Sbjct: 2   TSKKVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALK 61

Query: 64  KADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            AD+ C C YK+S  L S G+DP LA +LP +C L N+P+C
Sbjct: 62  HADYTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

[Close]

BLAST of CmoCh08G002630 vs. NCBI nr
Match: gi|700189457|gb|KGN44690.1| (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 10  VMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 69
           V  M +++LV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ LS ADF C
Sbjct: 7   VTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDC 66

Query: 70  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           FC YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 67  FCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 101

[Close]

BLAST of CmoCh08G002630 vs. NCBI nr
Match: gi|778727191|ref|XP_004150334.2| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 10  VMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 69
           V  M +++LV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ LS ADF C
Sbjct: 35  VTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDC 94

Query: 70  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           FC YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 95  FCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 129

[Close]

BLAST of CmoCh08G002630 vs. NCBI nr
Match: gi|659092795|ref|XP_008447223.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 10  VMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 69
           V    +V+LV ++G    M++CGV ++GLTACKPWVTKPCPTE+PPA CC+ LS ADF C
Sbjct: 7   VKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSC 66

Query: 70  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           FC YK+S++L S GIDPDLALALP KC++ N+P+C
Sbjct: 67  FCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

[Close]

BLAST of CmoCh08G002630 vs. NCBI nr
Match: gi|848851631|ref|XP_012836760.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 17  MLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHS 76
           M+V L GA A MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S
Sbjct: 1   MVVFLGGAKA-MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNS 60

Query: 77  LVLPSLGIDPDLALALPAKCSLPNSPSC 105
            +LPSLGIDPDLALALPAKC++PN   C
Sbjct: 61  FMLPSLGIDPDLALALPAKCNIPNPTEC 86

[Close]

BLAST of CmoCh08G002630 vs. NCBI nr
Match: gi|604347964|gb|EYU46119.1| (hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata])

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 28  MDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHSLVLPSLGIDPD 87
           MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S +LPSLGIDPD
Sbjct: 3   MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDPD 62

Query: 88  LALALPAKCSLPNSPSC 105
           LALALPAKC++PN   C
Sbjct: 63  LALALPAKCNIPNPTEC 78

The following BLAST results are available for this feature:

BLAST of CmoCh08G002630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIRL1_ARATH	1.2e-17	47.12	Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1	[more]

BLAST of CmoCh08G002630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q7_CUCSA	8.4e-31	65.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1	[more]
A0A022S1B0_ERYGU	6.0e-21	63.64	Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg...	[more]
A0A022S1I9_ERYGU	1.1e-19	57.14	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1	[more]
A0A164Z5V2_DAUCA	9.6e-19	51.04	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1	[more]
A0A059AVL1_EUCGR	9.6e-19	52.08	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00727 PE=4 SV=1	[more]

BLAST of CmoCh08G002630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48485.1	6.6e-19	47.12	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G48490.1	9.8e-15	40.59	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmoCh08G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189457\|gb\|KGN44690.1\|	1.2e-30	65.26	hypothetical protein Csa_7G372360 [Cucumis sativus]	[more]
gi\|778727191\|ref\|XP_004150334.2\|	1.2e-30	65.26	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus]	[more]
gi\|659092795\|ref\|XP_008447223.1\|	2.3e-29	62.11	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]
gi\|848851631\|ref\|XP_012836760.1\|	1.3e-21	62.50	PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata]	[more]
gi\|604347964\|gb\|EYU46119.1\|	8.6e-21	63.64	hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005504	fatty acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002630.1	CmoCh08G002630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 11..104 score: 1.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 41..104 score: 4.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..103 score: 1.38
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 31..101 score: 2.
None	No IPR available	PANTHER	PTHR33122	FAMILY NOT NAMED	coord: 2..102 score: 1.1
None	No IPR available	PANTHER	PTHR33122:SF5	SUBFAMILY NOT NAMED	coord: 2..102 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G002630	Cucsa.388050	Cucumber (Gy14) v1	cgycmoB1078
CmoCh08G002630	CmaCh17G013140	Cucurbita maxima (Rimu)	cmacmoB366
CmoCh08G002630	Cla014868	Watermelon (97103) v1	cmowmB843
CmoCh08G002630	Csa7G372360	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G002630	MELO3C012724	Melon (DHL92) v3.5.1	cmomeB817
CmoCh08G002630	ClCG09G008160	Watermelon (Charleston Gray)	cmowcgB785
CmoCh08G002630	CSPI07G15110	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G002630	Lsi02G021670	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G002630	Cp4.1LG12g10570	Cucurbita pepo (Zucchini)	cmocpeB834
CmoCh08G002630	Cp4.1LG13g07080	Cucurbita pepo (Zucchini)	cmocpeB847
CmoCh08G002630	MELO3C012724.2	Melon (DHL92) v3.6.1	cmomedB922
CmoCh08G002630	CsaV3_7G026880	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G002630	Cla97C09G170830	Watermelon (97103) v2	cmowmbB916
CmoCh08G002630	Bhi09G001016	Wax gourd	cmowgoB1128
CmoCh08G002630	CsGy7G013600	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G002630	Carg05089	Silver-seed gourd	carcmoB0119
CmoCh08G002630	Carg11494	Silver-seed gourd	carcmoB0022

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G002630	CmoCh17G012840	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G002630	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G002630	Melon (DHL92) v3.5.1	cmomeB812
CmoCh08G002630	Melon (DHL92) v3.6.1	cmomedB915