MELO3C012724.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C012724.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLipid transfer protein
Locationchr01 : 23540900 .. 23541909 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTTCTAATCTCCCATCATATTCACATACAAACACAAACAATAACAAACCAAACTTTTCTACCTACTCACAATGGAGATGGCTTTAAAGGTGAAGATAACGGCGGTGGTGATATTGGTTGGCATAGCAGGAATATCCATAGCGATGGAAATGTGCGGCGTAGACGAGGAGGGTCTCACGGCATGTAAGCCGTGGGTAACGAAACCATGCCCGACCGAGATGCCACCGGCCACTTGTTGCAATAAGCTCTCCAATGCCGACTTTAGTTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATCCTGACCTTGCTCTTGCTTTGCCAGTTAAATGCAACATTACTAACACTCCAACTTGCTCTAGTTAAAGCTTGAGCAAAATAAATATTTATGAGGTTTGGATTTTGTTTATTTTAATTCTCCTAATTCTATTATGTATAATTATTTGAGTTTAGTTTTTTTTCTTTGAAAATTTTCAATCTCATTTTTTAACGGAAAGTTGAAGTTGTAGGATATTCTTTATGTTCCGTTTTGTTATATATATATACATTTTCTTGTTTACGTTTTTAGAAGAATAAAAGAATTTTGAAAATGAAAGTTAAAAATTGTTTTTTTTATTTTATTTTATTTTATTTTATTTTATTTTCTTTTATGAAAAATGGACTAAAACTTAAAATGTTTATATATATAAATATGTTTGTATTTGTTTGATTGTGTGTGTTGTTTGTGCAGTGTGTAAGTGGAAGTGGAAGTGGAAGTGGAATGGGAGAAGACCATCATATATTGGGCCTCACTTATCTTATGTTTAATTCTATTTCATTTCTTTTTCTACTTTTAAAAGAAAATGTAATTTTCTAATTTTCTAATTTTCTAATTTTCTAATTTTCTTTAATTTTTTATTTTTCCATCATTACATTTACTTTACGATGATGAATTGTAATGGTAATCGGTACTTTATCCACTTCATGCTTCACTATTCTAATTTTACTTTC

mRNA sequence

AAAATTTCTAATCTCCCATCATATTCACATACAAACACAAACAATAACAAACCAAACTTTTCTACCTACTCACAATGGAGATGGCTTTAAAGGTGAAGATAACGGCGGTGGTGATATTGGTTGGCATAGCAGGAATATCCATAGCGATGGAAATGTGCGGCGTAGACGAGGAGGGTCTCACGGCATGTAAGCCGTGGGTAACGAAACCATGCCCGACCGAGATGCCACCGGCCACTTGTTGCAATAAGCTCTCCAATGCCGACTTTAGTTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATCCTGACCTTGCTCTTGCTTTGCCAGTTAAATGCAACATTACTAACACTCCAACTTGCTCTAGTTAAAGCTTGAGCAAAATAAATATTTATGAGTGTGTAAGTGGAAGTGGAAGTGGAAGTGGAATGGGAGAAGACCATCATATATTGGGCCTCACTTATCTTATGTTTAATTCTATTTCATTTCTTTTTCTACTTTTAAAAGAAAATGTAATTTTCTAATTTTCTAATTTTCTAATTTTCTAATTTTCTTTAATTTTTTATTTTTCCATCATTACATTTACTTTACGATGATGAATTGTAATGGTAATCGGTACTTTATCCACTTCATGCTTCACTATTCTAATTTTACTTTC

Coding sequence (CDS)

ATGGAGATGGCTTTAAAGGTGAAGATAACGGCGGTGGTGATATTGGTTGGCATAGCAGGAATATCCATAGCGATGGAAATGTGCGGCGTAGACGAGGAGGGTCTCACGGCATGTAAGCCGTGGGTAACGAAACCATGCCCGACCGAGATGCCACCGGCCACTTGTTGCAATAAGCTCTCCAATGCCGACTTTAGTTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATCCTGACCTTGCTCTTGCTTTGCCAGTTAAATGCAACATTACTAACACTCCAACTTGCTCTAGTTAA

Protein sequence

MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS
BLAST of MELO3C012724.2 vs. NCBI nr
Match: XP_008447223.1 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60
           MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 104
           NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 103

BLAST of MELO3C012724.2 vs. NCBI nr
Match: KGN44690.1 (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 8.2e-44
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0

Query: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60
           MEMA KV +  V+ILVG+AGISIAME+CGVDE+GLTACKPWVTKPCP EMPPA CCNKLS
Sbjct: 1   MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 60

Query: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 104
           NADF CFCKYKNSMLLSSFGID DLALALPVKCNI NTPTCS+
Sbjct: 61  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCST 103

BLAST of MELO3C012724.2 vs. NCBI nr
Match: XP_004150334.2 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 6.1e-39
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 19  AGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYKNSMLLSS 78
           AGISIAME+CGVDE+GLTACKPWVTKPCP EMPPA CCNKLSNADF CFCKYKNSMLLSS
Sbjct: 47  AGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSS 106

Query: 79  FGIDPDLALALPVKCNITNTPTCSS 104
           FGID DLALALPVKCNI NTPTCS+
Sbjct: 107 FGIDSDLALALPVKCNIPNTPTCST 131

BLAST of MELO3C012724.2 vs. NCBI nr
Match: XP_022156089.1 (putative lipid-transfer protein DIR1 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0

Query: 1   MEMALKVK--ITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNK 60
           MEM   V     AV +LV +AGIS A+ +CGVDE+GLTACKPWVTKPCPT+ PP  CCN 
Sbjct: 1   MEMTRTVAALAVAVAVLVSLAGISGAVNVCGVDEDGLTACKPWVTKPCPTDPPPVACCNG 60

Query: 61  LSNADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 102
           LS ADF CFC YKNS++L S GI+P+LALALP KC + + P C
Sbjct: 61  LSKADFGCFCNYKNSLVLPSLGIEPNLALALPAKCGLPSAPPC 103

BLAST of MELO3C012724.2 vs. NCBI nr
Match: XP_022991757.1 (putative lipid-transfer protein DIR1 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 7.4e-29
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 8   KITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCF 67
           K+  +V++V +A +++A+++CGV+++ L ACKPWV KPCPTE+PPA CC+ LS AD  CF
Sbjct: 7   KVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCF 66

Query: 68  CKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCS 103
           CKYK+SMLLSS GID DLALALP KC++ NTP+CS
Sbjct: 67  CKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 101

BLAST of MELO3C012724.2 vs. TAIR10
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 22  SIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYKNSMLLSSFGI 81
           S+A+++CG+ ++ L  CKP V+K  PT  P   CC  L +ADF+C C YKNS  L SFG+
Sbjct: 24  SVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLCGYKNSPWLGSFGV 83

Query: 82  DPDLALALPVKCNITNTPTC 102
           DP+LA ALP +C + N PTC
Sbjct: 84  DPELASALPKQCGLANAPTC 102

BLAST of MELO3C012724.2 vs. TAIR10
Match: AT5G48490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 8   KITAVVILVGIAGI----SIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNAD 67
           K+  +VI++ +A +    S+A+++CG+ +  L  C P V+K  PT  P   CCN L +AD
Sbjct: 5   KVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALKHAD 64

Query: 68  FSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 102
           ++C C YKNS  L SFG+DP LA +LP +C++TN PTC
Sbjct: 65  YTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

BLAST of MELO3C012724.2 vs. Swiss-Prot
Match: sp|Q8W453|DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 22  SIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYKNSMLLSSFGI 81
           S+A+++CG+ ++ L  CKP V+K  PT  P   CC  L +ADF+C C YKNS  L SFG+
Sbjct: 24  SVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLCGYKNSPWLGSFGV 83

Query: 82  DPDLALALPVKCNITNTPTC 102
           DP+LA ALP +C + N PTC
Sbjct: 84  DPELASALPKQCGLANAPTC 102

BLAST of MELO3C012724.2 vs. TrEMBL
Match: tr|A0A1S3BHS9|A0A1S3BHS9_CUCME (putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60
           MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 104
           NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 103

BLAST of MELO3C012724.2 vs. TrEMBL
Match: tr|A0A0A0K4Q7|A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.4e-44
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0

Query: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60
           MEMA KV +  V+ILVG+AGISIAME+CGVDE+GLTACKPWVTKPCP EMPPA CCNKLS
Sbjct: 1   MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 60

Query: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 104
           NADF CFCKYKNSMLLSSFGID DLALALPVKCNI NTPTCS+
Sbjct: 61  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCST 103

BLAST of MELO3C012724.2 vs. TrEMBL
Match: tr|A0A1J6I7A4|A0A1J6I7A4_NICAT (Putative lipid-transfer protein dir1 OS=Nicotiana attenuata OX=49451 GN=DIR1_9 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 9   ITAVV-ILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCF 68
           +TAV+ IL+ IA +   + +C + E+GLTACKP VTKP P E P A+CC  LS AD  C 
Sbjct: 12  VTAVLGILLVIAELRNGLSLCNMKEDGLTACKPSVTKPNPVE-PSASCCEALSGADLQCL 71

Query: 69  CKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 102
           C Y+NS+LL S GIDP+LALALP KCN+T+   C
Sbjct: 72  CSYRNSLLLPSLGIDPELALALPPKCNLTSPANC 104

BLAST of MELO3C012724.2 vs. TrEMBL
Match: tr|A9PC76|A9PC76_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G251000v3 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0

Query: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60
           MEMA +  +  ++++V +   S A+ +C + E+GL ACKP VTKP P E P   CC  +S
Sbjct: 1   MEMAKRQLVVLLLVVVALFEGSRAVSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVS 60

Query: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNI-TNTPTC 102
            A+F+C C YKNS LL   GIDPDLA+ALP KCN+ T  P+C
Sbjct: 61  GANFTCLCSYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC 102

BLAST of MELO3C012724.2 vs. TrEMBL
Match: tr|F5BR62|F5BR62_TOBAC (Defective in induced resistance 1 protein OS=Nicotiana tabacum OX=4097 GN=DIR1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 14  ILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYKNS 73
           IL+ IA ++  + +C + ++GLTACKP VTKP P E P A+CC  LS AD  C C Y+NS
Sbjct: 18  ILLLIAELTNGLSLCNMGDDGLTACKPSVTKPNPVE-PSASCCEALSGADLQCLCSYRNS 77

Query: 74  MLLSSFGIDPDLALALPVKCNITNTPTC 102
           +LL S GIDP+LALALP KCN+T+   C
Sbjct: 78  LLLPSLGIDPELALALPPKCNLTSPANC 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008447223.11.8e-51100.00PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
KGN44690.18.2e-4485.44hypothetical protein Csa_7G372360 [Cucumis sativus][more]
XP_004150334.26.1e-3990.59PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus][more]
XP_022156089.12.6e-2963.11putative lipid-transfer protein DIR1 [Momordica charantia][more]
XP_022991757.17.4e-2962.11putative lipid-transfer protein DIR1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G48485.11.3e-1951.25Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G48490.11.9e-1844.90Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
Match NameE-valueIdentityDescription
sp|Q8W453|DIRL1_ARATH2.4e-1851.25Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BHS9|A0A1S3BHS9_CUCME1.2e-51100.00putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=... [more]
tr|A0A0A0K4Q7|A0A0A0K4Q7_CUCSA5.4e-4485.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV=1[more]
tr|A0A1J6I7A4|A0A1J6I7A4_NICAT2.7e-1956.38Putative lipid-transfer protein dir1 OS=Nicotiana attenuata OX=49451 GN=DIR1_9 P... [more]
tr|A9PC76|A9PC76_POPTR4.6e-1950.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G251000v3 PE=... [more]
tr|F5BR62|F5BR62_TOBAC6.0e-1955.68Defective in induced resistance 1 protein OS=Nicotiana tabacum OX=4097 GN=DIR1 P... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005504fatty acid binding
Vocabulary: Biological Process
TermDefinition
GO:0009627systemic acquired resistance
Vocabulary: INTERPRO
TermDefinition
IPR036312Bifun_inhib/LTP/seed_sf
IPR039265DIR1-like
IPR016140Bifunc_inhib/LTP/seed_store
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005504 fatty acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012724.2.1MELO3C012724.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 38..101
e-value: 2.1E-4
score: 30.6
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 11..101
e-value: 7.0E-11
score: 42.0
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 24..101
e-value: 1.9E-18
score: 68.0
NoneNo IPR availablePANTHERPTHR33122:SF26LIPID-TRANSFER PROTEIN DIR1-RELATEDcoord: 5..102
NoneNo IPR availableCDDcd04660nsLTP_likecoord: 28..100
e-value: 9.86777E-14
score: 60.4606
IPR039265Putative lipid-transfer protein DIR1-likePANTHERPTHR33122FAMILY NOT NAMEDcoord: 5..102
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILYSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 28..102