CmaCh17G013140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G013140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Lipid transfer protein
Location	Cma_Chr17 : 8858539 .. 8858844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATAATTGCTTCAAAGGTGGCAGTGATAGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGATCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

mRNA sequence

ATGGCCATAATTGCTTCAAAGGTGGCAGTGATAGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGATCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Coding sequence (CDS)

ATGGCCATAATTGCTTCAAAGGTGGCAGTGATAGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGATCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Protein sequence

MAIIASKVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS

Homology

[Close]

BLAST of CmaCh17G013140 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-16
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 8   VAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           +A+IV++  L + ++A+D+CG+++D+L  CKP V K  PT  P   CC  L  AD  C C
Sbjct: 11  MAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLC 70

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
            YK+S  L S G+D +LA ALP +C L N P+C
Sbjct: 71  GYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmaCh17G013140 vs. TrEMBL
Match: A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-30
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 8   VAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           V V++++V LA +++A++VCGV++D L ACKPWV KPCP E+PPAACC+ LS AD  CFC
Sbjct: 9   VMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFC 68

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           KYK+SMLLSS GID DLALALP KC++PNTP+CS
Sbjct: 69  KYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of CmaCh17G013140 vs. TrEMBL
Match: A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 23  AVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSSLGIDL 82
           A+D+C V +D L ACKP V++P P E P   CCD +S ADL C C YK+S +L SLGID 
Sbjct: 2   AMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDP 61

Query: 83  DLALALPAKCSLPNTPSC 101
           DLALALPAKC++PN   C
Sbjct: 62  DLALALPAKCNIPNPTEC 78

[Close]

BLAST of CmaCh17G013140 vs. TrEMBL
Match: A0A022S1I9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 6   SKVAVIV--MVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDG-LSKAD 65
           +KVAV+V  MVV LA  A A+D+C V +D L ACKP V++P P E P   CCD  +S AD
Sbjct: 7   TKVAVLVAAMVVFLAG-AKAMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVVSGAD 66

Query: 66  LGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
           L C C YK+  +L SLGID DLALALPAKC++PN   C
Sbjct: 67  LKCLCSYKNLFMLPSLGIDPDLALALPAKCNIPNPTEC 102

[Close]

BLAST of CmaCh17G013140 vs. TrEMBL
Match: A0A078F1G2_BRANA (BnaC02g38640D protein OS=Brassica napus GN=BnaC02g38640D PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 10  VIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFCKY 69
           V+V++ +LAE ++A+D+CG+ + +L  CKP V K  PT+ P   CCD L  AD  C C Y
Sbjct: 14  VVVVMATLAERSVAIDLCGMTQSELNECKPAVSKENPTK-PSTLCCDYLKHADFSCLCGY 73

Query: 70  KHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
           ++S  L S GID  LAL LP+KC +PN P+C
Sbjct: 74  RNSPWLGSFGIDPALALGLPSKCDMPNAPAC 103

[Close]

BLAST of CmaCh17G013140 vs. TrEMBL
Match: A0A164Z5V2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.4e-16
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 7   KVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCF 66
           KV  +VMVV++     A+D+C +++D L ACKP V  P P + P A CC  LS ADL C 
Sbjct: 6   KVVWLVMVVAMVVKMEAIDLCNMSEDGLMACKPAVTAPEPAD-PTAECCQALSGADLSCL 65

Query: 67  CKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
           C Y++S +L SLGID DLALALP+KC+L    +C
Sbjct: 66  CSYRNSFVLPSLGIDPDLALALPSKCNLTPPANC 98

[Close]

BLAST of CmaCh17G013140 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-17
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 8   VAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           +A+IV++  L + ++A+D+CG+++D+L  CKP V K  PT  P   CC  L  AD  C C
Sbjct: 11  MAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLC 70

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
            YK+S  L S G+D +LA ALP +C L N P+C
Sbjct: 71  GYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmaCh17G013140 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-14
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 4   IASKVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADL 63
           +A  V V+VM   + E ++A+D+CG+ + +L  C P V K  PT  P   CC+ L  AD 
Sbjct: 6   VAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALKHADY 65

Query: 64  GCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
            C C YK+S  L S G+D  LA +LP +C L N P+C
Sbjct: 66  TCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

[Close]

BLAST of CmaCh17G013140 vs. NCBI nr
Match: gi|700189457|gb|KGN44690.1| (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.8e-30
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 8   VAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           V V++++V LA +++A++VCGV++D L ACKPWV KPCP E+PPAACC+ LS AD  CFC
Sbjct: 9   VMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFC 68

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           KYK+SMLLSS GID DLALALP KC++PNTP+CS
Sbjct: 69  KYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of CmaCh17G013140 vs. NCBI nr
Match: gi|778727191|ref|XP_004150334.2| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.8e-30
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 8   VAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           V V++++V LA +++A++VCGV++D L ACKPWV KPCP E+PPAACC+ LS AD  CFC
Sbjct: 37  VMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFC 96

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           KYK+SMLLSS GID DLALALP KC++PNTP+CS
Sbjct: 97  KYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 130

[Close]

BLAST of CmaCh17G013140 vs. NCBI nr
Match: gi|659092795|ref|XP_008447223.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 7   KVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCF 66
           K+  +V++V +A +++A+++CGV+++ L ACKPWV KPCPTE+PPA CC+ LS AD  CF
Sbjct: 8   KITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCF 67

Query: 67  CKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           CKYK+SMLLSS GID DLALALP KC++ NTP+CS
Sbjct: 68  CKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCS 102

[Close]

BLAST of CmaCh17G013140 vs. NCBI nr
Match: gi|604347964|gb|EYU46119.1| (hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 23  AVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSSLGIDL 82
           A+D+C V +D L ACKP V++P P E P   CCD +S ADL C C YK+S +L SLGID 
Sbjct: 2   AMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDP 61

Query: 83  DLALALPAKCSLPNTPSC 101
           DLALALPAKC++PN   C
Sbjct: 62  DLALALPAKCNIPNPTEC 78

[Close]

BLAST of CmaCh17G013140 vs. NCBI nr
Match: gi|848851631|ref|XP_012836760.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata])

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 1


Query: 13  MVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHS 72
           MVV L   A A+D+C V +D L ACKP V++P P E P   CCD +S ADL C C YK+S
Sbjct: 1   MVVFLGG-AKAMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNS 60

Query: 73  MLLSSLGIDLDLALALPAKCSLPNTPSC 101
            +L SLGID DLALALPAKC++PN   C
Sbjct: 61  FMLPSLGIDPDLALALPAKCNIPNPTEC 86

The following BLAST results are available for this feature:

BLAST of CmaCh17G013140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIRL1_ARATH	3.6e-16	45.16	Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1	[more]

BLAST of CmaCh17G013140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q7_CUCSA	4.0e-30	67.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1	[more]
A0A022S1B0_ERYGU	1.8e-17	58.97	Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg...	[more]
A0A022S1I9_ERYGU	2.5e-16	57.14	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1	[more]
A0A078F1G2_BRANA	5.7e-16	48.35	BnaC02g38640D protein OS=Brassica napus GN=BnaC02g38640D PE=4 SV=1	[more]
A0A164Z5V2_DAUCA	7.4e-16	51.06	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1	[more]

BLAST of CmaCh17G013140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48485.1	2.1e-17	45.16	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G48490.1	1.2e-14	42.27	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmaCh17G013140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189457\|gb\|KGN44690.1\|	5.8e-30	67.02	hypothetical protein Csa_7G372360 [Cucumis sativus]	[more]
gi\|778727191\|ref\|XP_004150334.2\|	5.8e-30	67.02	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus]	[more]
gi\|659092795\|ref\|XP_008447223.1\|	1.1e-28	62.11	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]
gi\|604347964\|gb\|EYU46119.1\|	2.5e-17	58.97	hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata]	[more]
gi\|848851631\|ref\|XP_012836760.1\|	3.3e-17	57.95	PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005504	fatty acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G013140.1	CmaCh17G013140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 12..100 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..100 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 27..100 score: 5.39
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 32..96 score: 8.
None	No IPR available	PANTHER	PTHR33122	FAMILY NOT NAMED	coord: 1..100 score: 3.0
None	No IPR available	PANTHER	PTHR33122:SF9	SUBFAMILY NOT NAMED	coord: 1..100 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G013140	Cucsa.388050	Cucumber (Gy14) v1	cgycmaB1077
CmaCh17G013140	Cla014868	Watermelon (97103) v1	cmawmB331
CmaCh17G013140	Csa7G372360	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G013140	MELO3C012724	Melon (DHL92) v3.5.1	cmameB328
CmaCh17G013140	ClCG09G008160	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G013140	CSPI07G15110	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G013140	CmoCh08G002630	Cucurbita moschata (Rifu)	cmacmoB366
CmaCh17G013140	CmoCh17G012840	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G013140	Lsi02G021670	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G013140	Cp4.1LG12g10570	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G013140	MELO3C012724.2	Melon (DHL92) v3.6.1	cmamedB382
CmaCh17G013140	CsaV3_7G026880	Cucumber (Chinese Long) v3	cmacucB0457
CmaCh17G013140	Cla97C09G170830	Watermelon (97103) v2	cmawmbB390
CmaCh17G013140	Bhi09G001016	Wax gourd	cmawgoB0493
CmaCh17G013140	CsGy7G013600	Cucumber (Gy14) v2	cgybcmaB920
CmaCh17G013140	Carg05089	Silver-seed gourd	carcmaB0104
CmaCh17G013140	Carg11494	Silver-seed gourd	carcmaB0020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G013140	Melon (DHL92) v3.6.1	cmamedB374
CmaCh17G013140	Melon (DHL92) v3.6.1	cmamedB377
CmaCh17G013140	Cucurbita maxima (Rimu)	cmacmaB374
CmaCh17G013140	Melon (DHL92) v3.5.1	cmameB325