CmoCh17G012840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lipid transfer protein
Location	Cmo_Chr17 : 10085945 .. 10086220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCACCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCGCTTGGGATTGATCTTGATCTTGCTCTTGGTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

mRNA sequence

ATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCACCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCGCTTGGGATTGATCTTGATCTTGCTCTTGGTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Coding sequence (CDS)

ATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGCGGTGGACGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAAGCCATGGGTGATGAAACCGTGCCCAACCGAGCTACCGCCCACCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCGCTTGGGATTGATCTTGATCTTGCTCTTGGTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Homology

[Close]

BLAST of CmoCh17G012840 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-15
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           +V++  L + ++A+D+CG+++D L  CKP V K  PT  P   CC  L  AD  C C YK
Sbjct: 14  IVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLCGYK 73

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +S  L S G+D +LA  LP +C L N P+C
Sbjct: 74  NSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmoCh17G012840 vs. TrEMBL
Match: A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.6e-30
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           ++++V LA +++A++VCGV++DGL ACKPWV KPCP E+PP ACC+ LS AD  CFCKYK
Sbjct: 12  VLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYK 71

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSCS 92
           +SMLLSS GID DLAL LP KC++PNTP+CS
Sbjct: 72  NSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of CmoCh17G012840 vs. TrEMBL
Match: A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 13 AVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYKHSMLLSSLGIDL 72
          A+D+C V +DGL ACKP V++P P E P   CCD +S ADL C C YK+S +L SLGID 
Sbjct: 2  AMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDP 61

Query: 73 DLALGLPAKCSLPNTPSC 91
          DLAL LPAKC++PN   C
Sbjct: 62 DLALALPAKCNIPNPTEC 78

[Close]

BLAST of CmoCh17G012840 vs. TrEMBL
Match: B9SMN5_RICCO (Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1626730 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-17
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           +V++V++ E + ++ +C +N DGL ACKP V KP P E P  ACC  L+ A+L C C Y+
Sbjct: 13  VVLMVTMFEGSRSLTLCDMNDDGLLACKPSVTKPDPVEPPSPACCQALTGANLTCLCSYR 72

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +S++L SLGID DLALGLP+KC+L     C
Sbjct: 73  NSLMLPSLGIDPDLALGLPSKCNLTPPADC 102

[Close]

BLAST of CmoCh17G012840 vs. TrEMBL
Match: A0A078F1G2_BRANA (BnaC02g38640D protein OS=Brassica napus GN=BnaC02g38640D PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-17
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           +V++ +LAE ++A+D+CG+ +  L  CKP V K  PT+ P T CCD L  AD  C C Y+
Sbjct: 15  VVVMATLAERSVAIDLCGMTQSELNECKPAVSKENPTK-PSTLCCDYLKHADFSCLCGYR 74

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +S  L S GID  LALGLP+KC +PN P+C
Sbjct: 75  NSPWLGSFGIDPALALGLPSKCDMPNAPAC 103

[Close]

BLAST of CmoCh17G012840 vs. TrEMBL
Match: A0A022S1I9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-16
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 3   MVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDG-LSKADLGCFCKYKH 62
           MVV LA  A A+D+C V +DGL ACKP V++P P E P   CCD  +S ADL C C YK+
Sbjct: 16  MVVFLAG-AKAMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVVSGADLKCLCSYKN 75

Query: 63  SMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
             +L SLGID DLAL LPAKC++PN   C
Sbjct: 76  LFMLPSLGIDPDLALALPAKCNIPNPTEC 102

[Close]

BLAST of CmoCh17G012840 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           +V++  L + ++A+D+CG+++D L  CKP V K  PT  P   CC  L  AD  C C YK
Sbjct: 14  IVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHADFACLCGYK 73

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +S  L S G+D +LA  LP +C L N P+C
Sbjct: 74  NSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmoCh17G012840 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           MVM   + E ++A+D+CG+ +  L  C P V K  PT  P   CC+ L  AD  C C YK
Sbjct: 13  MVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALKHADYTCLCGYK 72

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +S  L S G+D  LA  LP +C L N P+C
Sbjct: 73  NSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

[Close]

BLAST of CmoCh17G012840 vs. NCBI nr
Match: gi|700189457|gb|KGN44690.1| (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           ++++V LA +++A++VCGV++DGL ACKPWV KPCP E+PP ACC+ LS AD  CFCKYK
Sbjct: 12  VLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYK 71

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSCS 92
           +SMLLSS GID DLAL LP KC++PNTP+CS
Sbjct: 72  NSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of CmoCh17G012840 vs. NCBI nr
Match: gi|778727191|ref|XP_004150334.2| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           ++++V LA +++A++VCGV++DGL ACKPWV KPCP E+PP ACC+ LS AD  CFCKYK
Sbjct: 40  VLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYK 99

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSCS 92
           +SMLLSS GID DLAL LP KC++PNTP+CS
Sbjct: 100 NSMLLSSFGIDSDLALALPVKCNIPNTPTCS 130

[Close]

BLAST of CmoCh17G012840 vs. NCBI nr
Match: gi|659092795|ref|XP_008447223.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-28
Identity = 57/91 (62.64%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1   MVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYK 60
           +V++V +A +++A+++CGV+++GL ACKPWV KPCPTE+PP  CC+ LS AD  CFCKYK
Sbjct: 12  VVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSCFCKYK 71

Query: 61  HSMLLSSLGIDLDLALGLPAKCSLPNTPSCS 92
           +SMLLSS GID DLAL LP KC++ NTP+CS
Sbjct: 72  NSMLLSSFGIDPDLALALPVKCNITNTPTCS 102

[Close]

BLAST of CmoCh17G012840 vs. NCBI nr
Match: gi|848851631|ref|XP_012836760.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata])

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 1


Query: 3  MVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYKHS 62
          MVV L   A A+D+C V +DGL ACKP V++P P E P   CCD +S ADL C C YK+S
Sbjct: 1  MVVFLGG-AKAMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNS 60

Query: 63 MLLSSLGIDLDLALGLPAKCSLPNTPSC 91
           +L SLGID DLAL LPAKC++PN   C
Sbjct: 61 FMLPSLGIDPDLALALPAKCNIPNPTEC 86

[Close]

BLAST of CmoCh17G012840 vs. NCBI nr
Match: gi|604347964|gb|EYU46119.1| (hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-18
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 13 AVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSKADLGCFCKYKHSMLLSSLGIDL 72
          A+D+C V +DGL ACKP V++P P E P   CCD +S ADL C C YK+S +L SLGID 
Sbjct: 2  AMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDP 61

Query: 73 DLALGLPAKCSLPNTPSC 91
          DLAL LPAKC++PN   C
Sbjct: 62 DLALALPAKCNIPNPTEC 78

The following BLAST results are available for this feature:

BLAST of CmoCh17G012840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIRL1_ARATH	2.1e-15	43.33	Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1	[more]

BLAST of CmoCh17G012840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q7_CUCSA	3.6e-30	65.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1	[more]
A0A022S1B0_ERYGU	3.2e-18	58.97	Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg...	[more]
B9SMN5_RICCO	3.5e-17	50.00	Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1626730 PE=4 SV=1	[more]
A0A078F1G2_BRANA	6.0e-17	50.00	BnaC02g38640D protein OS=Brassica napus GN=BnaC02g38640D PE=4 SV=1	[more]
A0A022S1I9_ERYGU	1.0e-16	57.30	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1	[more]

BLAST of CmoCh17G012840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48485.1	1.2e-16	43.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G48490.1	1.1e-14	43.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmoCh17G012840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189457\|gb\|KGN44690.1\|	5.2e-30	65.93	hypothetical protein Csa_7G372360 [Cucumis sativus]	[more]
gi\|778727191\|ref\|XP_004150334.2\|	5.2e-30	65.93	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus]	[more]
gi\|659092795\|ref\|XP_008447223.1\|	1.7e-28	62.64	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]
gi\|848851631\|ref\|XP_012836760.1\|	3.5e-18	57.95	PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata]	[more]
gi\|604347964\|gb\|EYU46119.1\|	4.6e-18	58.97	hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005504	fatty acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012840.1	CmoCh17G012840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 5..90 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 27..90 score: 6.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 17..90 score: 4.11
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 23..85 score: 1.
None	No IPR available	PANTHER	PTHR33122	FAMILY NOT NAMED	coord: 1..90 score: 5.7
None	No IPR available	PANTHER	PTHR33122:SF9	SUBFAMILY NOT NAMED	coord: 1..90 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012840	Cucsa.388050	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012840	CmaCh17G013140	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012840	Cla014868	Watermelon (97103) v1	cmowmB325
CmoCh17G012840	Csa7G372360	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012840	MELO3C012724	Melon (DHL92) v3.5.1	cmomeB321
CmoCh17G012840	ClCG09G008160	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012840	CSPI07G15110	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012840	Lsi02G021670	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012840	Cp4.1LG12g10570	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012840	MELO3C012724.2	Melon (DHL92) v3.6.1	cmomedB368
CmoCh17G012840	CsaV3_7G026880	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012840	Cla97C09G170830	Watermelon (97103) v2	cmowmbB373
CmoCh17G012840	Bhi09G001016	Wax gourd	cmowgoB0492
CmoCh17G012840	CsGy7G013600	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012840	Carg05089	Silver-seed gourd	carcmoB0112
CmoCh17G012840	Carg11494	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G012840	CmoCh08G002630	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012840	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012840	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012840	Melon (DHL92) v3.6.1	cmomedB363