Carg11494 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11494
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Lipid-transfer protein
Location	Cucurbita_argyrosperma_scaffold_083 : 234876 .. 235181 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATAACTGCTCTAAAGGTGGTCGTGATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGTGGTGGGCGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAGGCCATGGGTGATGAAACCATGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

mRNA sequence

ATGGCCATAACTGCTCTAAAGGTGGTCGTGATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGTGGTGGGCGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAGGCCATGGGTGATGAAACCATGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Coding sequence (CDS)

ATGGCCATAACTGCTCTAAAGGTGGTCGTGATGGTGATGGTGGTGAGCTTAGCGGAGATGGCGATGGTGGTGGGCGTGTGTGGTGTCAACAAGGACGGTCTCAAAGCGTGCAGGCCATGGGTGATGAAACCATGCCCAACCGAGCTACCGCCCGCCGCCTGTTGCGACGGGCTCTCGAAGGCGGACTTGGGTTGCTTTTGCAAGTATAAACACTCCATGTTGCTGTCCTCACTTGGGATTGATCTTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAGCCTTCCCAACACTCCCTCTTGCTCTTAA

Protein sequence

MAITALKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS

Homology

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BLAST of Carg11494 vs. NCBI nr
Match: XP_022953887.1 (putative lipid-transfer protein DIR1 [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 4.3e-45
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MAITALKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSK 60
           MAITA KVVVMVMVVSLAEMAM V VCGVNKDGLKAC+PWVMKPCPTELPP ACCDGLSK
Sbjct: 1   MAITAPKVVVMVMVVSLAEMAMAVDVCGVNKDGLKACKPWVMKPCPTELPPTACCDGLSK 60

Query: 61  ADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           ADLGCFCKYKHSMLLSSLGIDLDLAL LPAKCSLPNTPSCS
Sbjct: 61  ADLGCFCKYKHSMLLSSLGIDLDLALGLPAKCSLPNTPSCS 101

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BLAST of Carg11494 vs. NCBI nr
Match: XP_022991757.1 (putative lipid-transfer protein DIR1 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MAITALKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSK 60
           MAI A KV V+VMVVSLAEMAM V VCGVNKD LKAC+PWVMKPCPTELPPAACCDGLSK
Sbjct: 1   MAIIASKVAVIVMVVSLAEMAMAVDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSK 60

Query: 61  ADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           ADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS
Sbjct: 61  ADLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 101

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BLAST of Carg11494 vs. NCBI nr
Match: KGN44690.1 (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 5.6e-29
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 8   VVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           V+V++++V LA +++ + VCGV++DGL AC+PWV KPCP E+PPAACC+ LS AD  CFC
Sbjct: 9   VMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFC 68

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           KYK+SMLLSS GID DLALALP KC++PNTP+CS
Sbjct: 69  KYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of Carg11494 vs. NCBI nr
Match: XP_004150334.2 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 4.7e-28
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 18  AEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSS 77
           A +++ + VCGV++DGL AC+PWV KPCP E+PPAACC+ LS AD  CFCKYK+SMLLSS
Sbjct: 47  AGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSS 106

Query: 78  LGIDLDLALALPAKCSLPNTPSCS 102
            GID DLALALP KC++PNTP+CS
Sbjct: 107 FGIDSDLALALPVKCNIPNTPTCS 130

[Close]

BLAST of Carg11494 vs. NCBI nr
Match: XP_008447223.1 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 58/96 (60.42%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 6   LKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGC 65
           +K+  +V++V +A +++ + +CGV+++GL AC+PWV KPCPTE+PPA CC+ LS AD  C
Sbjct: 7   VKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSC 66

Query: 66  FCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           FCKYK+SMLLSS GID DLALALP KC++ NTP+CS
Sbjct: 67  FCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCS 102

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BLAST of Carg11494 vs. TrEMBL
Match: tr|A0A0A0K4Q7|A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-29
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 8   VVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           V+V++++V LA +++ + VCGV++DGL AC+PWV KPCP E+PPAACC+ LS AD  CFC
Sbjct: 9   VMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFC 68

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           KYK+SMLLSS GID DLALALP KC++PNTP+CS
Sbjct: 69  KYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

[Close]

BLAST of Carg11494 vs. TrEMBL
Match: tr|A0A1S3BHS9|A0A1S3BHS9_CUCME (putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 58/96 (60.42%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 6   LKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGC 65
           +K+  +V++V +A +++ + +CGV+++GL AC+PWV KPCPTE+PPA CC+ LS AD  C
Sbjct: 7   VKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLSNADFSC 66

Query: 66  FCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSCS 102
           FCKYK+SMLLSS GID DLALALP KC++ NTP+CS
Sbjct: 67  FCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCS 102

[Close]

BLAST of Carg11494 vs. TrEMBL
Match: tr|A0A022S1B0|A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 26  VCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFCKYKHSMLLSSLGIDLDLA 85
           +C V +DGL AC+P V++P P E P   CCD +S ADL C C YK+S +L SLGID DLA
Sbjct: 5   LCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDPDLA 64

Query: 86  LALPAKCSLPNTPSC 101
           LALPAKC++PN   C
Sbjct: 65  LALPAKCNIPNPTEC 78

[Close]

BLAST of Carg11494 vs. TrEMBL
Match: tr|A9PC76|A9PC76_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G251000v3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 8   VVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGCFC 67
           VV++++VV+L E +  V VC +++DGL AC+P V KP P E P   CC  +S A+  C C
Sbjct: 9   VVLLLVVVALFEGSRAVSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVSGANFTCLC 68

Query: 68  KYKHSMLLSSLGIDLDLALALPAKCSLPN-TPSC 101
            YK+S LL  LGID DLA+ALP+KC+L    PSC
Sbjct: 69  SYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC 102

[Close]

BLAST of Carg11494 vs. TrEMBL
Match: tr|A0A164Z5V2|A0A164Z5V2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018625 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 6   LKVVVMVMVVSLAEMAMVVGVCGVNKDGLKACRPWVMKPCPTELPPAACCDGLSKADLGC 65
           +KVV +VMVV++      + +C +++DGL AC+P V  P P + P A CC  LS ADL C
Sbjct: 5   IKVVWLVMVVAMVVKMEAIDLCNMSEDGLMACKPAVTAPEPAD-PTAECCQALSGADLSC 64

Query: 66  FCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 101
            C Y++S +L SLGID DLALALP+KC+L    +C
Sbjct: 65  LCSYRNSFVLPSLGIDPDLALALPSKCNLTPPANC 98

The following BLAST results are available for this feature:

BLAST of Carg11494 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953887.1	4.3e-45	94.06	putative lipid-transfer protein DIR1 [Cucurbita moschata]	[more]
XP_022991757.1	1.0e-43	92.08	putative lipid-transfer protein DIR1 [Cucurbita maxima]	[more]
KGN44690.1	5.6e-29	65.96	hypothetical protein Csa_7G372360 [Cucumis sativus]	[more]
XP_004150334.2	4.7e-28	69.05	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus]	[more]
XP_008447223.1	2.3e-27	60.42	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]

BLAST of Carg11494 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11494 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11494 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4Q7\|A0A0A0K4Q7_CUCSA	3.7e-29	65.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV=1	[more]
tr\|A0A1S3BHS9\|A0A1S3BHS9_CUCME	1.6e-27	60.42	putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=...	[more]
tr\|A0A022S1B0\|A0A022S1B0_ERYGU	1.6e-16	58.67	Uncharacterized protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a...	[more]
tr\|A9PC76\|A9PC76_POPTR	2.3e-15	51.06	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G251000v3 PE=...	[more]
tr\|A0A164Z5V2\|A0A164Z5V2_DAUCA	5.2e-15	49.47	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018625 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005504	fatty acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0009627	systemic acquired resistance

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR039265	DIR1-like
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005504	fatty acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11494-RA	Carg11494-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..100 e-value: 2.1E-5 score: 34.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 11..100 e-value: 2.1E-9 score: 37.3
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 23..100 e-value: 5.2E-17 score: 63.4
None	No IPR available	PANTHER	PTHR33122:SF26	LIPID-TRANSFER PROTEIN DIR1-RELATED	coord: 4..101
None	No IPR available	CDD	cd04660	nsLTP_like	coord: 27..99 e-value: 3.08618E-15 score: 64.3126
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	FAMILY NOT NAMED	coord: 4..101
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 27..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11494	Cla014868	Watermelon (97103) v1	carwmB0014
Carg11494	Csa7G372360	Cucumber (Chinese Long) v2	carcuB0013
Carg11494	MELO3C012724	Melon (DHL92) v3.5.1	carmeB0014
Carg11494	ClCG09G008160	Watermelon (Charleston Gray)	carwcgB0012
Carg11494	CSPI07G15110	Wild cucumber (PI 183967)	carcpiB0013
Carg11494	Cucsa.388050	Cucumber (Gy14) v1	carcgyB0013
Carg11494	CmaCh17G013140	Cucurbita maxima (Rimu)	carcmaB0020
Carg11494	CmoCh17G012840	Cucurbita moschata (Rifu)	carcmoB0021
Carg11494	CmoCh08G002630	Cucurbita moschata (Rifu)	carcmoB0022
Carg11494	Lsi02G021670	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11494	Cp4.1LG13g07080	Cucurbita pepo (Zucchini)	carcpeB0019
Carg11494	Cp4.1LG12g10570	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11494	CsGy7G013600	Cucumber (Gy14) v2	carcgybB0012
Carg11494	MELO3C012724.2	Melon (DHL92) v3.6.1	carmedB0015
Carg11494	CsaV3_7G026880	Cucumber (Chinese Long) v3	carcucB0013
Carg11494	Cla97C09G170830	Watermelon (97103) v2	carwmbB0012
Carg11494	Bhi09G001016	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11494	Carg05089	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11494	Cucurbita maxima (Rimu)	carcmaB0021
Carg11494	Melon (DHL92) v3.5.1	carmeB0013
Carg11494	Melon (DHL92) v3.6.1	carmedB0014