Cp4.1LG13g07080 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG13g07080
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLipid binding protein, putative
LocationCp4.1LG13 : 8813997 .. 8814311 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAACCACGGCGATGACGATGGCGATGGCGATGACGATGGTGATACTAGTGAGTTTATCGGGAGCATTGGCGGAAATGGATGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCGTGCCCTACCGAGCTGCCACCGGCTGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCGCTCGTGCTGCCCTCGCTCGGCATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCTTGCTAA

mRNA sequence

ATGGCTCAAACCACGGCGATGACGATGGCGATGGCGATGACGATGGTGATACTAGTGAGTTTATCGGGAGCATTGGCGGAAATGGATGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCGTGCCCTACCGAGCTGCCACCGGCTGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCGCTCGTGCTGCCCTCGCTCGGCATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCTTGCTAA

Coding sequence (CDS)

ATGGCTCAAACCACGGCGATGACGATGGCGATGGCGATGACGATGGTGATACTAGTGAGTTTATCGGGAGCATTGGCGGAAATGGATGTGTGCGGTGTGAGCCAGGACGGTCTCACGGCGTGCAAGCCGTGGGTGACGAAGCCGTGCCCTACCGAGCTGCCACCGGCTGCTTGTTGCGACGGTCTCTCCAAGGCTGACTTCGGTTGCTTTTGCAACTATAAGCACTCGCTCGTGCTGCCCTCGCTCGGCATTGACCCCGATCTTGCCCTTGCCTTGCCAGCCAAGTGCAGCCTCCCCAACAGCCCCTCTTGCTAA

Protein sequence

MAQTTAMTMAMAMTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC
BLAST of Cp4.1LG13g07080 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-17
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 1   MAQTTAMTMAMAMTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCD 60
           MA   A  + MAM +VI+  L      +D+CG+SQD L  CKP V+K  PT  P   CC 
Sbjct: 1   MASKKAAMVMMAM-IVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCT 60

Query: 61  GLSKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            L  ADF C C YK+S  L S G+DP+LA ALP +C L N+P+C
Sbjct: 61  ALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of Cp4.1LG13g07080 vs. TrEMBL
Match: A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.8e-31
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 13  MTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCN 72
           M ++ILV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ LS ADF CFC 
Sbjct: 10  MVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCK 69

Query: 73  YKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 70  YKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 101

BLAST of Cp4.1LG13g07080 vs. TrEMBL
Match: A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 28  MDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHSLVLPSLGIDPD 87
           MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S +LPSLGIDPD
Sbjct: 3   MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDPD 62

Query: 88  LALALPAKCSLPNSPSC 105
           LALALPAKC++PN   C
Sbjct: 63  LALALPAKCNIPNPTEC 78

BLAST of Cp4.1LG13g07080 vs. TrEMBL
Match: A0A022S1I9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1

Query: 7   MTMAMAMTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDG-LSKA 66
           MT    +   ++V L+GA A MD+C V++DGLTACKP V +P P E P   CCD  +S A
Sbjct: 6   MTKVAVLVAAMVVFLAGAKA-MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVVSGA 65

Query: 67  DFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           D  C C+YK+  +LPSLGIDPDLALALPAKC++PN   C
Sbjct: 66  DLKCLCSYKNLFMLPSLGIDPDLALALPAKCNIPNPTEC 102

BLAST of Cp4.1LG13g07080 vs. TrEMBL
Match: A0A164Z5V2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-19
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1

Query: 15  MVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYK 74
           +V++V++   +  +D+C +S+DGL ACKP VT P P + P A CC  LS AD  C C+Y+
Sbjct: 10  LVMVVAMVVKMEAIDLCNMSEDGLMACKPAVTAPEPAD-PTAECCQALSGADLSCLCSYR 69

Query: 75  HSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           +S VLPSLGIDPDLALALP+KC+L    +C
Sbjct: 70  NSFVLPSLGIDPDLALALPSKCNLTPPANC 98

BLAST of Cp4.1LG13g07080 vs. TrEMBL
Match: F5BR62_TOBAC (Defective in induced resistance 1 protein OS=Nicotiana tabacum GN=DIR1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-19
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1

Query: 17  ILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHS 76
           IL+ ++     + +C +  DGLTACKP VTKP P E P A+CC+ LS AD  C C+Y++S
Sbjct: 18  ILLLIAELTNGLSLCNMGDDGLTACKPSVTKPNPVE-PSASCCEALSGADLQCLCSYRNS 77

Query: 77  LVLPSLGIDPDLALALPAKCSLPNSPSC 105
           L+LPSLGIDP+LALALP KC+L +  +C
Sbjct: 78  LLLPSLGIDPELALALPPKCNLTSPANC 104

BLAST of Cp4.1LG13g07080 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 1   MAQTTAMTMAMAMTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCD 60
           MA   A  + MAM +VI+  L      +D+CG+SQD L  CKP V+K  PT  P   CC 
Sbjct: 1   MASKKAAMVMMAM-IVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCT 60

Query: 61  GLSKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            L  ADF C C YK+S  L S G+DP+LA ALP +C L N+P+C
Sbjct: 61  ALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of Cp4.1LG13g07080 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.8e-15
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1

Query: 7   MTMAMAMTMVILVSLSGALAE----MDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGL 66
           MT      MVI++ ++  + E    +D+CG++Q  L  C P V+K  PT  P   CC+ L
Sbjct: 1   MTSKKVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNAL 60

Query: 67  SKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
             AD+ C C YK+S  L S G+DP LA +LP +C L N+P+C
Sbjct: 61  KHADYTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

BLAST of Cp4.1LG13g07080 vs. NCBI nr
Match: gi|700189457|gb|KGN44690.1| (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-31
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 13  MTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCN 72
           M ++ILV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ LS ADF CFC 
Sbjct: 10  MVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCK 69

Query: 73  YKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 70  YKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 101

BLAST of Cp4.1LG13g07080 vs. NCBI nr
Match: gi|778727191|ref|XP_004150334.2| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-31
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1

Query: 8   TMAMA-----MTMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGL 67
           TM MA     M ++ILV L+G    M+VCGV +DGLTACKPWVTKPCP E+PPAACC+ L
Sbjct: 28  TMEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKL 87

Query: 68  SKADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
           S ADF CFC YK+S++L S GID DLALALP KC++PN+P+C
Sbjct: 88  SNADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 129

BLAST of Cp4.1LG13g07080 vs. NCBI nr
Match: gi|659092795|ref|XP_008447223.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 1

Query: 7   MTMAMAM---TMVILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLS 66
           M MA+ +    +VILV ++G    M++CGV ++GLTACKPWVTKPCPTE+PPA CC+ LS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 67  KADFGCFCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 105
            ADF CFC YK+S++L S GIDPDLALALP KC++ N+P+C
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

BLAST of Cp4.1LG13g07080 vs. NCBI nr
Match: gi|848851631|ref|XP_012836760.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata])

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-21
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1

Query: 17  ILVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHS 76
           ++V L GA A MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S
Sbjct: 1   MVVFLGGAKA-MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNS 60

Query: 77  LVLPSLGIDPDLALALPAKCSLPNSPSC 105
            +LPSLGIDPDLALALPAKC++PN   C
Sbjct: 61  FMLPSLGIDPDLALALPAKCNIPNPTEC 86

BLAST of Cp4.1LG13g07080 vs. NCBI nr
Match: gi|604347964|gb|EYU46119.1| (hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata])

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 28  MDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGCFCNYKHSLVLPSLGIDPD 87
           MD+C V++DGLTACKP V +P P E P   CCD +S AD  C C+YK+S +LPSLGIDPD
Sbjct: 3   MDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDPD 62

Query: 88  LALALPAKCSLPNSPSC 105
           LALALPAKC++PN   C
Sbjct: 63  LALALPAKCNIPNPTEC 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DIRL1_ARATH3.4e-1748.08Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K4Q7_CUCSA3.8e-3167.39Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1[more]
A0A022S1B0_ERYGU6.0e-2163.64Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg... [more]
A0A022S1I9_ERYGU2.5e-1955.56Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1[more]
A0A164Z5V2_DAUCA9.6e-1953.33Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018625 PE=4 SV=1[more]
F5BR62_TOBAC9.6e-1954.55Defective in induced resistance 1 protein OS=Nicotiana tabacum GN=DIR1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48485.11.9e-1848.08 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G48490.19.8e-1541.18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
Match NameE-valueIdentityDescription
gi|700189457|gb|KGN44690.1|5.4e-3167.39hypothetical protein Csa_7G372360 [Cucumis sativus][more]
gi|778727191|ref|XP_004150334.2|9.2e-3164.71PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus][more]
gi|659092795|ref|XP_008447223.1|2.3e-2961.39PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
gi|848851631|ref|XP_012836760.1|3.0e-2161.36PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata][more]
gi|604347964|gb|EYU46119.1|8.6e-2163.64hypothetical protein MIMGU_mgv1a022331mg, partial [Erythranthe guttata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005504 fatty acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g07080.1Cp4.1LG13g07080.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 12..104
score: 3.2
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 41..104
score: 4.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 31..103
score: 1.38
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 31..101
score: 2.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 1..102
score: 5.8
NoneNo IPR availablePANTHERPTHR33122:SF5SUBFAMILY NOT NAMEDcoord: 1..102
score: 5.8

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g07080Cp4.1LG12g10570Cucurbita pepo (Zucchini)cpecpeB153
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g07080Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG13g07080Cucurbita pepo (Zucchini)cpecpeB202
Cp4.1LG13g07080Cucurbita pepo (Zucchini)cpecpeB204
Cp4.1LG13g07080Cucurbita pepo (Zucchini)cpecpeB216
Cp4.1LG13g07080Cucumber (Gy14) v1cgycpeB0360
Cp4.1LG13g07080Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g07080Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g07080Cucurbita maxima (Rimu)cmacpeB708
Cp4.1LG13g07080Cucurbita maxima (Rimu)cmacpeB911
Cp4.1LG13g07080Cucurbita moschata (Rifu)cmocpeB227
Cp4.1LG13g07080Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g07080Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g07080Cucurbita moschata (Rifu)cmocpeB660
Cp4.1LG13g07080Wild cucumber (PI 183967)cpecpiB194
Cp4.1LG13g07080Wild cucumber (PI 183967)cpecpiB199
Cp4.1LG13g07080Cucumber (Chinese Long) v2cpecuB198
Cp4.1LG13g07080Bottle gourd (USVL1VR-Ls)cpelsiB143
Cp4.1LG13g07080Bottle gourd (USVL1VR-Ls)cpelsiB152
Cp4.1LG13g07080Watermelon (Charleston Gray)cpewcgB159
Cp4.1LG13g07080Watermelon (97103) v1cpewmB196
Cp4.1LG13g07080Melon (DHL92) v3.5.1cpemeB167
Cp4.1LG13g07080Cucumber (Gy14) v2cgybcpeB311
Cp4.1LG13g07080Cucumber (Gy14) v2cgybcpeB614
Cp4.1LG13g07080Cucumber (Gy14) v2cgybcpeB741
Cp4.1LG13g07080Melon (DHL92) v3.6.1cpemedB199
Cp4.1LG13g07080Melon (DHL92) v3.6.1cpemedB207
Cp4.1LG13g07080Silver-seed gourdcarcpeB0031
Cp4.1LG13g07080Silver-seed gourdcarcpeB0129
Cp4.1LG13g07080Silver-seed gourdcarcpeB0222
Cp4.1LG13g07080Silver-seed gourdcarcpeB0366
Cp4.1LG13g07080Silver-seed gourdcarcpeB0935
Cp4.1LG13g07080Silver-seed gourdcarcpeB1384
Cp4.1LG13g07080Cucumber (Chinese Long) v3cpecucB0197
Cp4.1LG13g07080Cucumber (Chinese Long) v3cpecucB0230
Cp4.1LG13g07080Cucumber (Chinese Long) v3cpecucB0238
Cp4.1LG13g07080Wax gourdcpewgoB0247