CSPI07G15110 (gene) Wild cucumber (PI 183967)

NameCSPI07G15110
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLipid transfer protein
LocationChr7 : 13813628 .. 13814562 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAACCACATTCTTCCAAATCCAATTCACGAGAACATAACTTGTGGCTCTTCTTTCTCCTCCTTTCTCTTTCAAGAACTCATATATAAATACACACACACTCATACATGTATATCAAAATCTCCAACCTCTCATATTCACATACAAACACAAACAATAACAAACCAAAGTTTTCTAGCTACACTCACACAATGGAGATGGCTCAAAAGGTGACGGTGATGGTGGTGCTGATACTAGTTGGCTTAGCAGGAATATCGATAGCGATGGAAGTTTGCGGCGTCGACGAGGATGGTCTCACAGCATGCAAGCCGTGGGTAACGAAACCGTGCCCTGCCGAGATGCCACCGGCCGCTTGTTGCAATAAACTCTCCAATGCTGACTTTGATTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATTCTGACCTTGCTCTTGCCTTGCCAGTCAAGTGCAACATTCCTAACACTCCCACTTGCTCTGCTTAAACCTTAAGGAAAATAAATATTTATGAGGTTTGGATTTTTTTTTTTTTGTTTTAGTTCTCATTTGAGCTTAGGATTTTTTTGGTCCTGTTTTGTTAAATATTTGGTTGTTATTTATTTTTTAAATTTAGGTTTATATATGTTAGTATTTGTTTTAATTTGTGTGTTTTTGTTTGTGCAGTGTGTAGGTGAAAGTACAATGGTGGAGAAGACCATAATGTATTGGGTCTCACTTATCTTAATGTTTAATTGTATTTCTTTTTTCTACTTAAAAGGAAAAAAAAATGTAATTTTCTAATTTGAATTTTATTTCCAAATGTAATAGTAATCGGTAATTTATCCACTTAATGCTTCACTATTCTAATTTTATTTTGTCAAATACAATAATTAATATTTTTCTTTTCAATTTAACTTTTTAGAATATATTTATTTA

mRNA sequence

ATGTATATCAAAATCTCCAACCTCTCATATTCACATACAAACACAAACAATAACAAACCAAAGTTTTCTAGCTACACTCACACAATGGAGATGGCTCAAAAGGTGACGGTGATGGTGGTGCTGATACTAGTTGGCTTAGCAGGAATATCGATAGCGATGGAAGTTTGCGGCGTCGACGAGGATGGTCTCACAGCATGCAAGCCGTGGGTAACGAAACCGTGCCCTGCCGAGATGCCACCGGCCGCTTGTTGCAATAAACTCTCCAATGCTGACTTTGATTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATTCTGACCTTGCTCTTGCCTTGCCAGTCAAGTGCAACATTCCTAACACTCCCACTTGCTCTGCTTAA

Coding sequence (CDS)

ATGTATATCAAAATCTCCAACCTCTCATATTCACATACAAACACAAACAATAACAAACCAAAGTTTTCTAGCTACACTCACACAATGGAGATGGCTCAAAAGGTGACGGTGATGGTGGTGCTGATACTAGTTGGCTTAGCAGGAATATCGATAGCGATGGAAGTTTGCGGCGTCGACGAGGATGGTCTCACAGCATGCAAGCCGTGGGTAACGAAACCGTGCCCTGCCGAGATGCCACCGGCCGCTTGTTGCAATAAACTCTCCAATGCTGACTTTGATTGCTTTTGCAAATATAAGAACTCAATGTTGCTATCCTCATTTGGGATTGATTCTGACCTTGCTCTTGCCTTGCCAGTCAAGTGCAACATTCCTAACACTCCCACTTGCTCTGCTTAA
BLAST of CSPI07G15110 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1

Query: 32  AQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNAD 91
           A  V + +++I+  L   S+A+++CG+ +D L  CKP V+K  P   P   CC  L +AD
Sbjct: 6   AAMVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHAD 65

Query: 92  FDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           F C C YKNS  L SFG+D +LA ALP +C + N PTC
Sbjct: 66  FACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of CSPI07G15110 vs. TrEMBL
Match: A0A0A0K4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.4e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88
           MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS
Sbjct: 1   MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 60

Query: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 131
           NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS
Sbjct: 61  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

BLAST of CSPI07G15110 vs. TrEMBL
Match: A9PC76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25240g PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-20
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1

Query: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88
           MEMA++  V+++L++V L   S A+ VC + EDGL ACKP VTKP P E P   CC  +S
Sbjct: 1   MEMAKRQLVVLLLVVVALFEGSRAVSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVS 60

Query: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPN-TPTC 130
            A+F C C YKNS LL   GID DLA+ALP KCN+    P+C
Sbjct: 61  GANFTCLCSYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC 102

BLAST of CSPI07G15110 vs. TrEMBL
Match: A0A022S1I9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 1

Query: 34  KVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFD 93
           KV V+V  ++V LAG   AM++C V EDGLTACKP V +P P E  P  C   +S AD  
Sbjct: 8   KVAVLVAAMVVFLAGAK-AMDLCNVTEDGLTACKPSVVQPNPVEPSPECCDAVVSGADLK 67

Query: 94  CFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           C C YKN  +L S GID DLALALP KCNIPN   C
Sbjct: 68  CLCSYKNLFMLPSLGIDPDLALALPAKCNIPNPTEC 102

BLAST of CSPI07G15110 vs. TrEMBL
Match: A0A022S1B0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 1

Query: 52  AMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSSFGIDS 111
           AM++C V EDGLTACKP V +P P E P   CC+ +S AD  C C YKNS +L S GID 
Sbjct: 2   AMDLCNVTEDGLTACKPSVVQPNPVE-PSPECCDAVSGADLKCLCSYKNSFMLPSLGIDP 61

Query: 112 DLALALPVKCNIPNTPTC 130
           DLALALP KCNIPN   C
Sbjct: 62  DLALALPAKCNIPNPTEC 78

BLAST of CSPI07G15110 vs. TrEMBL
Match: K4AWU1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1

Query: 34  KVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNADFD 93
           KV  MVVL L+ +   +  M +C +D+DGLT+CKP VT+P P E P A+CC  LS AD  
Sbjct: 7   KVLGMVVLGLLLIVEFASGMNICNMDDDGLTSCKPSVTQPNPVE-PSASCCEALSGADLQ 66

Query: 94  CFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           C C Y+NS +L S GID +LALALP KCN+ +   C
Sbjct: 67  CLCSYRNSFVLPSLGIDPELALALPTKCNLTSPSNC 101

BLAST of CSPI07G15110 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-19
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1

Query: 32  AQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNAD 91
           A  V + +++I+  L   S+A+++CG+ +D L  CKP V+K  P   P   CC  L +AD
Sbjct: 6   AAMVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQHAD 65

Query: 92  FDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           F C C YKNS  L SFG+D +LA ALP +C + N PTC
Sbjct: 66  FACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of CSPI07G15110 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query: 32  AQKVTVMVVLILVGLAGI--SIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSN 91
           ++KV +MV+++++    +  S+A+++CG+ +  L  C P V+K  P   P   CCN L +
Sbjct: 3   SKKVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALKH 62

Query: 92  ADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           AD+ C C YKNS  L SFG+D  LA +LP +C++ N PTC
Sbjct: 63  ADYTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

BLAST of CSPI07G15110 vs. NCBI nr
Match: gi|778727191|ref|XP_004150334.2| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1

Query: 1   MYIKISNLSYSHTNTNNNKPKFSSYTHTMEMAQKVTVMVVLILVGLAGISIAMEVCGVDE 60
           MYIKISNLSYSHTNTNNNKPKFSSYTHTMEMAQKVTVMVVLILVGLAGISIAMEVCGVDE
Sbjct: 1   MYIKISNLSYSHTNTNNNKPKFSSYTHTMEMAQKVTVMVVLILVGLAGISIAMEVCGVDE 60

Query: 61  DGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSSFGIDSDLALALPVK 120
           DGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSSFGIDSDLALALPVK
Sbjct: 61  DGLTACKPWVTKPCPAEMPPAACCNKLSNADFDCFCKYKNSMLLSSFGIDSDLALALPVK 120

Query: 121 CNIPNTPTCS 131
           CNIPNTPTCS
Sbjct: 121 CNIPNTPTCS 130

BLAST of CSPI07G15110 vs. NCBI nr
Match: gi|700189457|gb|KGN44690.1| (hypothetical protein Csa_7G372360 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 9.2e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88
           MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS
Sbjct: 1   MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 60

Query: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 131
           NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS
Sbjct: 61  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCS 102

BLAST of CSPI07G15110 vs. NCBI nr
Match: gi|659092795|ref|XP_008447223.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1

Query: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88
           MEMA KV +  V+ILVG+AGISIAME+CGVDE+GLTACKPWVTKPCP EMPPA CCNKLS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTCSA 132
           NADF CFCKYKNSMLLSSFGID DLALALPVKCNI NTPTCS+
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTCSS 103

BLAST of CSPI07G15110 vs. NCBI nr
Match: gi|747067608|ref|XP_011080533.1| (PREDICTED: putative lipid-transfer protein DIR1 [Sesamum indicum])

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-21
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 1

Query: 31  MAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLSNA 90
           M  KV ++VV+I+V L G + AM +C V EDG TACKP VT P P E P   CC  ++ A
Sbjct: 6   MITKVVLLVVVIMVVLDGAN-AMSLCNVTEDGFTACKPSVTPPNP-EAPSPECCEAVAGA 65

Query: 91  DFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 130
           D +C C YKNS +L S GID DLALALP KCN+P+ P C
Sbjct: 66  DLECLCSYKNSFMLPSLGIDPDLALALPAKCNVPSPPEC 102

BLAST of CSPI07G15110 vs. NCBI nr
Match: gi|224065456|ref|XP_002301823.1| (hypothetical protein POPTR_0002s25240g [Populus trichocarpa])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1

Query: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88
           MEMA++  V+++L++V L   S A+ VC + EDGL ACKP VTKP P E P   CC  +S
Sbjct: 1   MEMAKRQLVVLLLVVVALFEGSRAVSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVS 60

Query: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPN-TPTC 130
            A+F C C YKNS LL   GID DLA+ALP KCN+    P+C
Sbjct: 61  GANFTCLCSYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DIRL1_ARATH1.1e-1744.90Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K4Q7_CUCSA6.4e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372360 PE=4 SV=1[more]
A9PC76_POPTR2.2e-2052.94Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25240g PE=2 SV=1[more]
A0A022S1I9_ERYGU1.4e-1956.25Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025642mg PE=4 SV=1[more]
A0A022S1B0_ERYGU4.2e-1961.54Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022331mg... [more]
K4AWU1_SOLLC1.2e-1852.08Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48485.16.4e-1944.90 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G48490.11.0e-1641.00 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
Match NameE-valueIdentityDescription
gi|778727191|ref|XP_004150334.2|1.8e-68100.00PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus][more]
gi|700189457|gb|KGN44690.1|9.2e-52100.00hypothetical protein Csa_7G372360 [Cucumis sativus][more]
gi|659092795|ref|XP_008447223.1|1.4e-4485.44PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
gi|747067608|ref|XP_011080533.1|6.4e-2155.56PREDICTED: putative lipid-transfer protein DIR1 [Sesamum indicum][more]
gi|224065456|ref|XP_002301823.1|3.2e-2052.94hypothetical protein POPTR_0002s25240g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005504 fatty acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G15110.1CSPI07G15110.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 53..129
score: 3.7
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 66..129
score: 3.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 56..130
score: 3.83
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 62..125
score: 8.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 30..129
score: 3.2
NoneNo IPR availablePANTHERPTHR33122:SF9SUBFAMILY NOT NAMEDcoord: 30..129
score: 3.2