CmoCh04G031570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Structural constituent of ribosome isoform 2
Location	Cmo_Chr04 : 21843236 .. 21851305 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGATCAAAATAACCCTTTTTAAGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTGTTCTTTTTTTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTATAATTTCTTTACTGGCAGCCTATTCAATTCCCTGTTTATTCCGGAAGATATCTTATTTCCATTTTTAAGTTTATGATTTATCTGTTGTGGACCACGAATTTCTTGCACATGTACTTGGTTTTTATGTGAAAAAATTCTGGAACTAACAAATTTACAAAGGCAAAACAAGTTGCTTTGATTATTCTTAAAAATTTTGGCTACTTTCTCTCTTGTTGTTCACTTCTATTGGGATAAGTTATGTGAAAATCTAGTTTCAGACAAATCGATTGGTATAGGAATGGAATCAAAATAAACCGGAAACCTGAAACCTGAAACACTAGTGCAAAAGTTGGGGAAGGAGAATTATTTGTGAGGAAGTTATCTGTTGTGGAATTGCTGCCAGTTATGTATTCAAGCCAATGGACAATACGAACTCGACTATATTGTAACTTTCATAAAACTTGCTCTTCAGGATATGGTTTGAGAATTTGAAAGAATACTGCCGGCAGTCATCTTTAGGTGAATAGTCGTGCTGTTATTATGGCTGGAAAAGATAGAAATGACTATTACATTGTATACAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTATTTAAATTGATGACAACCTTTCAGATTTAGAATAAATACACTTGAGCCGTTTTGAACCCATGACCACTTGTTAAACCTGGGAGAAGTTCCCTAAGTTGAAATCCACGGACACATCTTGGTTATATTAGCAACTTACTGACTTGAGCAACATTCAGGAAGTTTTGCATTGAACGAAGTACAACATCTGTCTTTTTGAAGAATTGGAATAGAAAAGCCCCCTTTGGTGGCAATGTTGTTATGGATGCGTGTAACTACCCAAATCCACCGCTAGCATGTTAGATAAAACCTTTGTTTTTTCCTTATTTAGATTCACACGTTTACATTTAATTTCCCTTTGACCATTTGACAAACACGTCGAATGGATTAGCGAATTCTTAGACGTCAATTTTATAGGAAATGACACAGATTCAGTTGGCCACTCTCCACCCATTTAGGATAGGTTGTATTTAAATAGGAAATCTGTTTACAAGATTTAATATCCGGATTTTGAAGAGCAGTCAAACTTTCAGTCCTTCTCTCTCTCTTATCTTTCTTCCAACAACCTCCTGTCGACAATATCCTCTCGGTGTTTTCCCGGGCCGATTATCGAAATCCAACAAGTGGTATCAGAGCCAAGTTGAAGCGATCGGTAGTATACCATCACAGAAGAGCCAACCTATCAACATTCAAGTTGAATAGCTCAAGTGGTCAGAGTGTCGACCTAACAACACACAAGGTCTCAGGTTCGAGTAGAAGAAAATGCAAAGGGCGAAAATAAGCACATCGTGGGGTCCATCCCGAGCAAACTCGCTCACTCCTCCATGCCGCCGTCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGACGTCGTGATGACGGGCGTCGAGGTGTCATTGAGCGAGTGATCACGGAGACAACGACTGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTCAACCTACAGGCGCATGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGTTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAAGGAATTAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATTGAGCAGCTGCGGAAGGAGCTCTCGGAGATCTCCTTTAAGGACGTCGAGGTGTCATTGAGCGAGTGATCACGGAGACAACGACTGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTCAACCTACAGGCGCATGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGTTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAAGGAATTAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATTGAGCAGCTGCGGAAGGAGCTCTCGGAGATCTGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGAAGCACGGGGCTCGCCAACAGCATCACCACACTCGGTGGCAGCATCAACGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCATGTGGCTCAATCCGAGGAGGATGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACGTGGCGTCGAACCCGAGGAAGAACTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTGCTCCGGTGAGCGTCGAACAAATGCACCTGGGGAGCCAATTCGACTAAAGGAGGAGCGAGTGCTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCGGGGTCAAGTCTGCGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTAAAATTCGGCGATGGCTCCGTCGTCGAGATCGAAGGGCACGGCACCATCCTATTCGTCGACAAGGGAGGCAATCATCACAAGCTGACCGGCGTCTACTTCATCCCGAGACTCAAGGCTAATATTGTGAGCCTGGGTCAACTCGATAAGGCCGGCTGCCACATTTCCATCAAACGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGAAAAACTGCCTTTACATCCTAAAGCTAGAGATAGAAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCAAAGAAGAGGCGGCCGAACAAGACGTGGAGTCTGGAGGACATGCCGCCAGGGACACCGAGCAACCGGTCAACCTCTCGGCCAGGTACCAGAAGATGGAAAACCTATTAGGGAGAGGTGAACCACCTGGACTGGCGGTGCGCCAACTCGAAGAAGAGGCGGCCGAACAAGACGTGGAGTCTGGAGGACATGCCGCCAGGGACACTGAGCCATAGGGCTCAAAACGGAGTTCAAACGAAACGAAATAAGGCAGATATAACACAGGTTTTAGGAGGAGATTGTTAGATAAAACAATTGTTAGATAAAACCTTTGTTTTTTCCTTATTTAGATTCACACGTTTACATTTAATTTCCCTTTGACCATTTGACAAACACGTCGAATGGATTAGCGAATTCTTAGACGTCAATTTTCTAGGAAGTGGCACAGGAAATCTGTTTACAAGATTTAATATCCGGATTTTGAAGAGCAGTCAAACTTTCAGTCCTTCTCTCTCTCTTATTTTACGCATTTTATCTTTCTTCCAACAACCTCCTGTCGACAATATCATCTCGGTGTTTTCCCGAAATCCAACATAGCAGATATTGTCCTCTTTGAGCCTTCCCTTTTGGGCTTCCCCTCAAGGCTTTCATGACAGTTATTTTCCTTGGTCTATATCATATTATTGGTTCGAAAGTTTGTTGCTATCTGGAAAGCTTGGGTACAGGTCCAACACTTGCGCTGTAGCCTGTGATTATGAGGCTTACTAGCAGCTAAATGGATAATAGAATGTAGAGCAACCAAACCATTTGGAGTAGAAGCAATAACAAATAGCCGAGGATAGCAAGGCTTTAAAGAAGGTTAGATAACCAAAGATCTTTCCACAAAAAACCAAAAAAAAAAAAAAAAAAATCCTTCTTCGATTCCCCAACTTGAAATGAGCATGGCTTTCTAGTCGAGACCAGTTCTTAGAGATATTTAGCCAAGGGACTGTGTAAACTCAAACCATTTCTTCTACCTGAATGCCAACCATTAATGTCAGACCCATGAATACTAGCAATAACCTGTTGCCAACAAGAAGAAGGTTCATTTATAAAACACCAACCTCATTATGCTATCAAAGCCAAATTCCTGTTTTCAATGCTCCTATTTCAAGACCACCATCATTCTGAGCTTTTGTAACAATGCTCCGTCGAACCAAATGAGTTACTTTACCTCCTTCCTTTCCTTCTCAAAGAAAAATTGAAGAAGTCTTTTGAACTCCACTCTAACCAAAGACCATAAGAACTAAAGACATAATAAGGCCTTCCCTAGATAGAGTAAAGCGCTTCCATCTATCAATAATCAGAATCTATTATACCATAGGATAAGAGTTCCTGCTTTTCGTAATGATTGGAAGAAGGAATGACAACTCCTTTAATCAAAGCAGTTCCTGAATCACAAGAGCAGTTAATGTTTGACTACAAGGTATGGAAGAGAACGTCTTTGGATCTTCACTTGTATCCAAACAGAGTTTAAGAGAAGAGGAGCCCAAGAGTCGCAAACAACCTTCTTCAACATCTGGATTGATTAAAGAAACTTCTGGAAAAATTATAAAAGAAGCAACCATTTCTTTTTTCCGAGAATAATGAAGAGGGGGAGATTCCTTTGATCTCCTTAAATCAATTTAGTACCATGAGGGCTGAGAATCTCTGTACTGGAAGGATTCGAATGCGAAACATTCTTGGCAATAGGCGAGACCTCTTGAACTGGAACGGAAGCATTAACTACAGGGGGAACTGTAGGAAAACCGGCCTCAAGAGACGTCTTCATTAATGGCGTTGGCTGAACTGAAACGTTATCAAGGGAATTTCGTTCGTCTCATTAAAGGGCTGTAATAAAGATTGAATGCCTTACAAGAGTCTTCTCCGGGCAACGAGGCAACTTCTTTTGGAGCGAGTAACGCCTCTTATGGAACGAGGCAACTTATTTTGCTAAAATCTGTCTGCACCACCTCCTATTTTTTCTAATCCAAAAAGATTTGAGTCGTAAGTAAAGTCTTACAAGAATCCGTAAAAACGACGCTGACCTTCCAATTCATCTTTACATCATTCTTATAACTATTAATAGAAGTAACTTTTCCAATATCCAATTTCTTTAGGGAAGCTGAATTTGGTGAGCACTCCTGCTGACACTTCAGAGAATCTTTTACTGTTTTAAGAGAGTCGAGTAACTTCTAAATTTTGTTTTCTTTTGATAAACGACCAGTATGTTTACACTTGTAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTAAAAATCTGGAAGAATGAAACAGAAAAAGAGAACGACTTAAGGTAAGGCCTCTTATATAGGCGCAGAGGATGAGACTGTAAAAGCTAACATCTTCCTATTTAACTCGTTTGAAATATTCGAAGCTGTTGCTCTTACTAAAAACTCCCTTGCATGCTATGCCAGATATGATTCTATTGGCAGACTTATCTCATGATTTCGAGAGCTAACTTCTGAAGTTTCTTTACTATATTGTGAAAGGAAGATTGTTAGGACATGGGTAAGCATAGAACGTTCTTCTAGATATGGCAGTAGAGTCATAATGTCAATAATCACAGAAGAGGAGGGGTGGGGTGGTGGATTGGATATCTGCTTTTCTTCTCCATCTTACTATTTCAAATTTGTTCCGTTTTTATTCCTAAGCTTTCAAAAGATCTCTCTTTAGATGTTTTATTTTGGCATCAACTTTACATATTTATTTTAGTTCCTCTCACGCAATATCTACCACTCAAAAGTGTGAATAGATATGAAAATATTATTATTACTCAACGAAAGAATACAGATTTAAGAATAAGAAAAAGAATTGGTATCGAATGTTCAATCTTCATTCATATTCACAAAAAAAGAATTGGGGTCGAATGTTCAATCTTCATTCATATTCACAACTTAGGATACAAGATACTAAATAATGTATACAAATAACATATAAACTAATTCAAACTAAAATAAGTGACATCCTCAACTTTAAAAATTGACTATTTAATTCTTACCTTGTTTGATCATTTGAGCATATATTTGCACTGTATAACTTGAAATTAAGTACAAGGACTAAATTTATGAAATAAGTCTTAGGAACAAAATGATTATATTTAAAGAGTAACGTGATTCATGTAGACAAGGGAAGTTGTAGGACAAAATGATTATTTTTAAAAGTGTAGGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTATGTAAGCTTGGCTAGCTGGCTGCATATGCTTTGTTAATTTCGTTTTGAATTTGATTTATGTTGGTATCATGGTTTGTTCTGTGTATATATGCGCGCAGGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGATTAGATACGAACTACCATACAAGTACAACACACTTCCAATCGCTTCCATTTCCTTCCAAAATCAAATTGAATATCGAATGGTACTTTTCTTTCCAGCGACACACAAATTATTCAGTCATCC

mRNA sequence

AATTGGATCAAAATAACCCTTTTTAAGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTGTTCTTTTTTTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGATTAGATACGAACTACCATACAAGTACAACACACTTCCAATCGCTTCCATTTCCTTCCAAAATCAAATTGAATATCGAATGGTACTTTTCTTTCCAGCGACACACAAATTATTCAGTCATCC

Coding sequence (CDS)

ATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGA

Homology

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BLAST of CmoCh04G031570 vs. Swiss-Prot
Match: NDHT_ARATH (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana GN=ndhT PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-69
Identity = 137/217 (63.13%), Postives = 169/217 (77.88%), Query Frame = 1


Query: 320 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALG 379
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 380 PS-LTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 439
                +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 440 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGR 499
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 500 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

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BLAST of CmoCh04G031570 vs. Swiss-Prot
Match: DNAJ_HYDTT (Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-10
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +YQ LGV  +A  EEIK AYRRL+KEYHPD ++   + AS+KF ++ + Y +LS+EE RK
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 65

Query: 453 FYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTP 490
            YD  L   +     D +   ++D  E   Q  + +P
Sbjct: 66  EYDRILKSGDEKSYRDFMEY-IQDFLESIWQGMRRSP 99

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BLAST of CmoCh04G031570 vs. Swiss-Prot
Match: DNAJ_SYNP6 (Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +YQ LGV  +AD +EIK AYRRL+++YHPD    P   A DKF ++ + YEVLS  E+R 
Sbjct: 5   YYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEP--GAEDKFKEINRAYEVLSEPETRA 64

Query: 453 FYD 456
            YD
Sbjct: 65  RYD 65

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BLAST of CmoCh04G031570 vs. Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +Y+ LGV   A  +EIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 65

Query: 453 FYD 456
            YD
Sbjct: 66  RYD 66

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BLAST of CmoCh04G031570 vs. Swiss-Prot
Match: DNAJ_GEOSE (Chaperone protein DnaJ OS=Geobacillus stearothermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +Y+ LGV   A  EEIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 453 FYD 456
            YD
Sbjct: 66  HYD 66

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BLAST of CmoCh04G031570 vs. TrEMBL
Match: A0A0A0LT25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 7.2e-102
Identity = 198/242 (81.82%), Postives = 212/242 (87.60%), Query Frame = 1


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 356
           MASP  PNSL  ++TFHS A TFRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNN--NNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYR 416
                   R +KE N+ NN  NN LGPSL DLLNNSSDSHYQFLGV AEA++EEIKSAYR
Sbjct: 61  --------RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYR 120

Query: 417 RLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 476
           RLSKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+K
Sbjct: 121 RLSKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMK 180

Query: 477 LEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEP 536
           LEDPYEQELQNW STPDMVDRL GRN++LSDQA+TALTLDI IILFAI CIVYVLLFKEP
Sbjct: 181 LEDPYEQELQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 234

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BLAST of CmoCh04G031570 vs. TrEMBL
Match: A0A061EBG7_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.6e-79
Identity = 157/224 (70.09%), Postives = 185/224 (82.59%), Query Frame = 1


Query: 316 ARTFRT----WPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNN 375
           ART RT      V ASQ P+ RQR PPGVDTRIHW N++EGWIGG + SQ + ++K    
Sbjct: 77  ARTRRTNCGSLGVLASQGPSGRQRAPPGVDTRIHWDNEDEGWIGGSSKSQ-QTEEKLGAE 136

Query: 376 NNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAA 435
               N LG    DLLN+SSDSHYQFLGV AEADLEE+K+AYRRLSKEYHPDTTSLPLKAA
Sbjct: 137 EQQKNLLGEKFADLLNDSSDSHYQFLGVSAEADLEEVKAAYRRLSKEYHPDTTSLPLKAA 196

Query: 436 SDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDM 495
           S+KFMKL++VY VLS+EESR+FYDWTLAQE ASR+A+KLRI+LEDPY+Q+L+N+K  PDM
Sbjct: 197 SEKFMKLREVYNVLSSEESRRFYDWTLAQEAASRKAEKLRIRLEDPYQQDLRNYKPKPDM 256

Query: 496 VDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           VDRL GRNM+LSDQA TALT D+ +I+FAI CI+YVL+FKEPYY
Sbjct: 257 VDRLGGRNMELSDQAMTALTFDVFVIIFAICCIIYVLVFKEPYY 299

[Close]

BLAST of CmoCh04G031570 vs. TrEMBL
Match: A0A0F7H024_9ROSI (Chaperone DnaJ-domain superfamily protein (Fragment) OS=Melianthus villosus GN=NDHT PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.0e-77
Identity = 150/221 (67.87%), Postives = 185/221 (83.71%), Query Frame = 1


Query: 317 RTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTP--SQSRRDQKEQNNNNN 376
           R +R     +S+ P  RQR PPGVDTRIHW+N++EGWIGG +   SQS+ + +E+  N  
Sbjct: 15  RVYRLRIFASSEQPYKRQRAPPGVDTRIHWENEDEGWIGGNSSQTSQSKLNAEEEEKN-- 74

Query: 377 NNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDK 436
              LG    +LLN+SSDSHYQFLGV A+ADLEEIK+AYR+LSKEYHPDTTSLPLKAASDK
Sbjct: 75  --LLGEKFAELLNDSSDSHYQFLGVEAQADLEEIKTAYRKLSKEYHPDTTSLPLKAASDK 134

Query: 437 FMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDR 496
           FMKL+++Y+VLSN+ESR+FYDWTLAQE ASRQA+K+R+KLEDPY+QEL  ++S PD+VDR
Sbjct: 135 FMKLREIYDVLSNDESRRFYDWTLAQEAASRQAEKMRMKLEDPYQQELDKYESVPDLVDR 194

Query: 497 LAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           L G+N+ LSDQA+TALT+DI II+FAI CIVYVL+FKEPYY
Sbjct: 195 LGGKNLKLSDQASTALTIDIAIIIFAICCIVYVLIFKEPYY 231

[Close]

BLAST of CmoCh04G031570 vs. TrEMBL
Match: A0A059DAD9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00085 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 150/213 (70.42%), Postives = 176/213 (82.63%), Query Frame = 1


Query: 324 VYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQN-NNNNNNALGPSL 383
           V A+Q P  R RPPPGVDTRIHW+N++EGWIGG   S+S    K+        N LG   
Sbjct: 51  VSATQGPQER-RPPPGVDTRIHWENEDEGWIGGGDGSRSEEGGKQLGAEEEQRNLLGEKF 110

Query: 384 TDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVY 443
            DLLN S+DSHYQFLG+ A ADLEEIK+AYRRLSKEYHPDTTSLPLK ASDKF+KL++VY
Sbjct: 111 ADLLNESADSHYQFLGISANADLEEIKAAYRRLSKEYHPDTTSLPLKTASDKFLKLREVY 170

Query: 444 EVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDL 503
           +VLS+EESR+FYDWTLAQE ASRQA+K+R++LEDPYEQELQN+K  PDMVDRL+GRNMDL
Sbjct: 171 DVLSDEESRRFYDWTLAQEAASRQAEKMRMRLEDPYEQELQNYKPVPDMVDRLSGRNMDL 230

Query: 504 SDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           SDQA +ALT D+ II+FAI CI+YV+ FKEPYY
Sbjct: 231 SDQAMSALTFDVFIIIFAICCIIYVIYFKEPYY 262

[Close]

BLAST of CmoCh04G031570 vs. TrEMBL
Match: A0A103XGU1_CYNCS (DnaJ domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_007539 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 142/212 (66.98%), Postives = 178/212 (83.96%), Query Frame = 1


Query: 324 VYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALGPSLT 383
           +YA++    RQR PPGVDTRIHW+N++EGW+GG     + R + E+     NN LG   +
Sbjct: 44  IYAAEGGGERQRAPPGVDTRIHWENEDEGWVGGSGSGNTTR-KVEEEEEQTNNLLGEKFS 103

Query: 384 DLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYE 443
           +LLNNS+DSHYQFLGV AEADLEEIK+AYRRLSKEYHPDTTSLPLKAAS+ FMKL++VY+
Sbjct: 104 ELLNNSTDSHYQFLGVPAEADLEEIKAAYRRLSKEYHPDTTSLPLKAASEMFMKLREVYD 163

Query: 444 VLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDLS 503
           VLSN E R+FYDWTLAQE ASR+A+K+R++LEDPY ++++NW+S PDMVDRL GRNM+LS
Sbjct: 164 VLSNSEKRRFYDWTLAQEAASREAEKMRVRLEDPYMKDIENWESVPDMVDRLGGRNMELS 223

Query: 504 DQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           DQA +ALT DI II+F+I CI+YV++FKEPYY
Sbjct: 224 DQAKSALTFDIFIIIFSICCIIYVVVFKEPYY 254

[Close]

BLAST of CmoCh04G031570 vs. TAIR10
Match: AT4G09350.1 (AT4G09350.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 265.4 bits (677), Expect = 7.7e-71
Identity = 137/217 (63.13%), Postives = 169/217 (77.88%), Query Frame = 1


Query: 320 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALG 379
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 380 PS-LTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 439
                +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 440 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGR 499
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 500 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of CmoCh04G031570 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 219.9 bits (559), Expect = 3.7e-57
Identity = 106/127 (83.46%), Postives = 120/127 (94.49%), Query Frame = 1


Query: 102 FIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISV 161
           F+Q+AWTRRSRGEAAKRPN+KSWKQRTDMYMRPFLLNVFFS+KF+HAKVMHR TSKVISV
Sbjct: 58  FVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISV 117

Query: 162 ATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDA 221
           ATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ERIEGKLGIVID 
Sbjct: 118 ATTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDT 177

Query: 222 IKENGIM 229
           IKE+GI+
Sbjct: 178 IKEHGII 184

[Close]

BLAST of CmoCh04G031570 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 116 AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLP 175
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 176 SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of CmoCh04G031570 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-17
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 117 KRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSL 176
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 177 TDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+ A+ +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of CmoCh04G031570 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 131 YMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 190
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 191 ERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: gi|659066817|ref|XP_008462782.1| (PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo])

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 197/240 (82.08%), Postives = 212/240 (88.33%), Query Frame = 1


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 356
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 416
           G      ++ +    NN +NN LGPSL DLLNNSSDSHYQFLGVGAEA++EEIKSAYRRL
Sbjct: 61  G------KKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRL 120

Query: 417 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 476
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 180

Query: 477 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           DPYEQELQNW+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: gi|449439697|ref|XP_004137622.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 198/242 (81.82%), Postives = 212/242 (87.60%), Query Frame = 1


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 356
           MASP  PNSL  ++TFHS A TFRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNN--NNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYR 416
                   R +KE N+ NN  NN LGPSL DLLNNSSDSHYQFLGV AEA++EEIKSAYR
Sbjct: 61  --------RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYR 120

Query: 417 RLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIK 476
           RLSKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+K
Sbjct: 121 RLSKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMK 180

Query: 477 LEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEP 536
           LEDPYEQELQNW STPDMVDRL GRN++LSDQA+TALTLDI IILFAI CIVYVLLFKEP
Sbjct: 181 LEDPYEQELQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 234

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: gi|720093395|ref|XP_010246036.1| (PREDICTED: uncharacterized protein LOC104589413 [Nelumbo nucifera])

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 159/246 (64.63%), Postives = 193/246 (78.46%), Query Frame = 1


Query: 297 MASPSIPNSLFL--------NRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQN 356
           MAS + P +L L        NR+  +  R+ R   V+AS+ P+ R+R PPGVDTRIHW N
Sbjct: 1   MASTAAPPTLSLLFGSRKGGNRSEEAHGRSRRNCRVFASENPDRRKRAPPGVDTRIHWDN 60

Query: 357 DEEGWIGGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEI 416
            +EGWIGG T S S+  ++        N LG   +DLLN SSDSHYQFLGV  +AD+EEI
Sbjct: 61  PDEGWIGGST-SSSQASRRLNVEEEQRNLLGEKFSDLLNTSSDSHYQFLGVAVDADMEEI 120

Query: 417 KSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQAD 476
           K+AYRRLSKEYHPDTTSLP+KAASDKFMKLK+VY++LSNEESR+FYDWTLAQE ASR+A+
Sbjct: 121 KAAYRRLSKEYHPDTTSLPIKAASDKFMKLKEVYDILSNEESRRFYDWTLAQEAASRKAE 180

Query: 477 KLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVL 535
           K+++KLEDPY QE++NW+S PDMVDRL GRNMDLSDQA TALT+D+ II+FAI CI+YVL
Sbjct: 181 KMKMKLEDPYMQEVKNWESVPDMVDRLGGRNMDLSDQAMTALTIDVGIIIFAICCIIYVL 240

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: gi|590699286|ref|XP_007045885.1| (Chaperone DnaJ-domain superfamily protein [Theobroma cacao])

HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78
Identity = 157/224 (70.09%), Postives = 185/224 (82.59%), Query Frame = 1


Query: 316 ARTFRT----WPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNN 375
           ART RT      V ASQ P+ RQR PPGVDTRIHW N++EGWIGG + SQ + ++K    
Sbjct: 77  ARTRRTNCGSLGVLASQGPSGRQRAPPGVDTRIHWDNEDEGWIGGSSKSQ-QTEEKLGAE 136

Query: 376 NNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAA 435
               N LG    DLLN+SSDSHYQFLGV AEADLEE+K+AYRRLSKEYHPDTTSLPLKAA
Sbjct: 137 EQQKNLLGEKFADLLNDSSDSHYQFLGVSAEADLEEVKAAYRRLSKEYHPDTTSLPLKAA 196

Query: 436 SDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDM 495
           S+KFMKL++VY VLS+EESR+FYDWTLAQE ASR+A+KLRI+LEDPY+Q+L+N+K  PDM
Sbjct: 197 SEKFMKLREVYNVLSSEESRRFYDWTLAQEAASRKAEKLRIRLEDPYQQDLRNYKPKPDM 256

Query: 496 VDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           VDRL GRNM+LSDQA TALT D+ +I+FAI CI+YVL+FKEPYY
Sbjct: 257 VDRLGGRNMELSDQAMTALTFDVFVIIFAICCIIYVLVFKEPYY 299

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: gi|702236724|ref|XP_010045171.1| (PREDICTED: dnaJ homolog subfamily B member 14-like [Eucalyptus grandis])

HSP 1 Score: 295.4 bits (755), Expect = 2.0e-76
Identity = 150/213 (70.42%), Postives = 176/213 (82.63%), Query Frame = 1


Query: 324 VYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQN-NNNNNNALGPSL 383
           V A+Q P  R RPPPGVDTRIHW+N++EGWIGG   S+S    K+        N LG   
Sbjct: 51  VSATQGPQER-RPPPGVDTRIHWENEDEGWIGGGDGSRSEEGGKQLGAEEEQRNLLGEKF 110

Query: 384 TDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVY 443
            DLLN S+DSHYQFLG+ A ADLEEIK+AYRRLSKEYHPDTTSLPLK ASDKF+KL++VY
Sbjct: 111 ADLLNESADSHYQFLGISANADLEEIKAAYRRLSKEYHPDTTSLPLKTASDKFLKLREVY 170

Query: 444 EVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDL 503
           +VLS+EESR+FYDWTLAQE ASRQA+K+R++LEDPYEQELQN+K  PDMVDRL+GRNMDL
Sbjct: 171 DVLSDEESRRFYDWTLAQEAASRQAEKMRMRLEDPYEQELQNYKPVPDMVDRLSGRNMDL 230

Query: 504 SDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           SDQA +ALT D+ II+FAI CI+YV+ FKEPYY
Sbjct: 231 SDQAMSALTFDVFIIIFAICCIIYVIYFKEPYY 262

The following BLAST results are available for this feature:

BLAST of CmoCh04G031570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHT_ARATH	1.4e-69	63.13	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]
DNAJ_HYDTT	1.9e-10	41.24	Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12...	[more]
DNAJ_SYNP6	3.2e-10	52.38	Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]
DNAJ_GEOKA	4.2e-10	50.79	Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) GN=dnaJ PE=3 ...	[more]
DNAJ_GEOSE	5.4e-10	50.79	Chaperone protein DnaJ OS=Geobacillus stearothermophilus GN=dnaJ PE=3 SV=1	[more]

BLAST of CmoCh04G031570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT25_CUCSA	7.2e-102	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1	[more]
A0A061EBG7_THECC	8.6e-79	70.09	Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 ...	[more]
A0A0F7H024_9ROSI	8.0e-77	67.87	Chaperone DnaJ-domain superfamily protein (Fragment) OS=Melianthus villosus GN=N...	[more]
A0A059DAD9_EUCGR	1.4e-76	70.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00085 PE=4 SV=1	[more]
A0A103XGU1_CYNCS	4.0e-76	66.98	DnaJ domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_00753...	[more]

BLAST of CmoCh04G031570 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09350.1	7.7e-71	63.13	Chaperone DnaJ-domain superfamily protein	[more]
AT3G20230.1	3.7e-57	83.46	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	4.6e-23	47.79	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	3.7e-17	39.64	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	9.5e-13	35.05	Ribosomal L18p/L5e family protein	[more]

BLAST of CmoCh04G031570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066817\|ref\|XP_008462782.1\|	1.1e-103	82.08	PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo]	[more]
gi\|449439697\|ref\|XP_004137622.1\|	1.0e-101	81.82	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [C...	[more]
gi\|720093395\|ref\|XP_010246036.1\|	1.4e-79	64.63	PREDICTED: uncharacterized protein LOC104589413 [Nelumbo nucifera]	[more]
gi\|590699286\|ref\|XP_007045885.1\|	1.2e-78	70.09	Chaperone DnaJ-domain superfamily protein [Theobroma cacao]	[more]
gi\|702236724\|ref\|XP_010045171.1\|	2.0e-76	70.42	PREDICTED: dnaJ homolog subfamily B member 14-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain
IPR005484	Ribosomal_L18
IPR018253	DnaJ_domain_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031570.1	CmoCh04G031570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 430..450 score: 9.6E-13coord: 394..412 score: 9.6E-13coord: 412..427 score: 9.6
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 389..455 score: 8.6
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 393..455 score: 3.8
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 391..450 score: 2.3
IPR001623	DnaJ domain	PROFILE	PS50076	DNAJ_2	coord: 392..458 score: 1
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 321..454 score: 2.88
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 129..227 score: 1.
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 435..454 scor
None	No IPR available	unknown	Coil	Coil	coord: 428..448 scor
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 134..227 score: 1.1
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 101..246 score: 4.2E
None	No IPR available	PANTHER	PTHR12899:SF7	SUBFAMILY NOT NAMED	coord: 101..246 score: 4.2E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 131..227 score: 1.33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031570	CmaCh15G000050	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G031570	Cla011953	Watermelon (97103) v1	cmowmB735
CmoCh04G031570	MELO3C008070	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031570	ClCG11G008640	Watermelon (Charleston Gray)	cmowcgB633
CmoCh04G031570	Lsi11G010000	Bottle gourd (USVL1VR-Ls)	cmolsiB624
CmoCh04G031570	Cp4.1LG01g26190	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031570	Cp4.1LG13g11770	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G031570	Cla97C11G215000	Watermelon (97103) v2	cmowmbB702
CmoCh04G031570	Bhi04G002083	Wax gourd	cmowgoB0870
CmoCh04G031570	Carg06108	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G031570	CmoCh15G000040	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031570	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031570	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031570	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031570	Watermelon (Charleston Gray)	cmowcgB622
CmoCh04G031570	Watermelon (97103) v1	cmowmB723
CmoCh04G031570	Cucumber (Gy14) v2	cgybcmoB236
CmoCh04G031570	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G031570	Cucumber (Chinese Long) v3	cmocucB0812
CmoCh04G031570	Watermelon (97103) v2	cmowmbB708