Carg06108 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06108
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chaperone protein DnaJ
Location	Cucurbita_argyrosperma_scaffold_026 : 1092931 .. 1098082 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTCTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTATAATTTCTTTACTGGCAGCCTATTCAATTCCCTGTTTATTCCGGAAGATATCTTATTTCCATTTTTAAGTTTATGATTTATCTGTTGTGGACCACGAATTTCTTGCACATGTACTTGGTTTTTATATGAAAAAATTCTGGAACTAACAAATTTACAAAGGCAAGACAAGTTGCTTTGATTATTCTTAAAATTTTTGGCTATTTTCTCTCTTGTTGTTCACTTCTATTGGGATAAGTTATGTGAAAATCTAGTTTCAGACAAATCGATTGGTATAGGAATGGAATCAAAATAAACCGGAAACCTGAAACCTGAAACACTAGTGCAAAAGTTGGGGAAGGAGAATTATTTGTGAGGAAGTTATCTGTTGTGGATTTGCTGCCAGTTATGTATTCAAGCCAATGGACAATACGAACTCGACTATATTGTAACTTTCATAAAACTTGCTCTTCAGGATATGGTTTGAGAATTTGAAAGAATACTGCCGGCAGTCATCTTTAGGTGAATAGTCGTGCTGTTATTATGGCTGGAAAAGATAGAAATGACTATTACATTGTATACAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTATTTAAATTGAGCTTGAAATTGATGACAACCTTTCAGATTTAGAATAAATACACTTGAGCCGTTTTGAACCCATGACCACTTGGTTAAACCTGGGAGAAGTTCCCTAAGTTGAAATCCACGGACACATCTTGGTTATATTAGCAACTTACTGACTTGAGCAACATTCAGGAAGTTTTGCATTGAACGAAGTACAACATCTGTCTTTTTGAAGAATTGGAATAGAAAAGCCCCCTTTGGTGGCAATGCTGTTATGGATGCGTGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGAGCTTTCCCTTTTGGGCTTCCCCTCAATACTTTAAAACGTGTTTACTAGGGGAAGGTTTCCACACCCTGCATTATCCCTTACCAACTACCATCTGTCTACAATCTAGATGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAACGCGGCTTTCATGACAGTTATTTTCCTTGGTCTATATCATATTATTGGTTCAAAAGTTTGTTGCTATCTGGAAAGCTTGGGTACAGGTCCAACACTTGCGCTGTAGCCTGTGATTATGAGGCTTACTAGCAGCTACATGGATAATAGGATGTAGAGCAACCAAACCATTTGGAGTAGAAGCAATAACAAATAGCCGAGGATAGCAAGGCTTTAAAGAAGGTTAGGTAACCAAAGATCTTTCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTTCTTCGATTCCCCAAACTTGAAATGAGCATGGCTTTCTAGTCGAGACCAGTTCTTAGAGATATTTAGCCAAGGACTGTGTAAACTCAAACCATTTCTTCTACCTGAATGCCAACCATTAATGTCAGACCCATGAATACTAGCAATAACCTGTTGCCAACAAGAAGAAGGTTCATTTATAAAACACCAACCTCATTATGCTATCAAAGCCAAATTCCTGTTTTCAATGCTCCTATTTCAAGACCACCATCATTCTGAGCTTTTGTAACAATGCTCCGGCGAACCAAATGAGTTACTTTCCCCCCTTCCTTTCCTTCTCAAAGAAAAATTGGAGAAGTCTTTTGAACTCCACTCTAACCAAAGACCATAAGAACTAAAGACATATAATAAGGCTTTCCCTAGATAGAGTAAAGCGCTTCCATCTATCAATAATCAGAATCTATTATACCATAGGATAAGAGTTCCTGCTTTTCGTAATGATTGGAAGAAGGAATGACAACTCCTTTAATCAAAGCAGTTCCTGAATCACAAGAGCAGTTAATGTTTGACTACAAGGTATGGAAGAGAACGTCTTTGGATCTTCACTTGTATCCAAACAGAGTTTAAGAGAAGAGGAACCCAAGAGTCGCAAACAACCTTCTTCAACATCTGGATTGATTAAAGAAACTTCTGGAAAAATTATAAAAGAAGCAACCATTTCTTTTTTCCGAGAATAATGAAGAGGGTGAGATTCCTTTGATCTCCTTAAACCAATTTAGTACCATGAGGGCTGAGAATCTCTGTACTGGAAGGATTCGAATGCGAAACATTCTTGGCAATAGGCGAAACCTCTTGAACTGGAAGGGAAGCATTAACTACAGGGGGAACTGTAGGAAAAAACCGGCCTCAAGAGACGTCTTCATTAATGGCGTTGGCTGAACTGAAACGTTATCAAGGGAATTCCGTTCGTCTCATTAAAGGGCTGTAATAAAGATTGAATGCCTTACAAGAGTCTTCTCCGGGCAACGAGGCAACTTCTTTTGCTAAAATCTGTCTGCACCACCTCCTATTTTTTCTAATCCAAAAAGATTTGAGTCGTAAGTAAAGTCTTTCAAGAATCCGTAAAAACGACGCTGACCTTCCAATTCATCTTTACATCATTCTTATAACTATTAATAGAAGTAACTTTTCCAATATCCAATTTCTTTAGGGAAGCTGAATTTGGTGAGCACTCCTGCTGACACTTCAGAGAATCTTTTACTGTTTTAAGAGAGTCGAGTAGCTTCTAAATTTTGTTTTCTTTTGATAAACGACCAGTATGTTTACACTTGTAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAATGGGATCATGTTTGTACCTTGAATTTAAAAATCTGGAAGAATGAAACAGAAAAAGAGAACGACTTAAGGTAAGGCCTCTTATATAGGCAGCAGAGGATGAGACTGTAAAAGCTAACATCTTCCTATTTAACTCGTTTGAAATATTCGAAGCTGTTGCTCTTACTAAAAACTCCCTTGCATGCTATGCCAGATATGATTCTATTGGCAGACTTATCTCATGATTTCGAGAGCTAACTTCTGAAGTTTCTTTACTATATTGTGAAAGGAAGATTGTTAGGACATGGGTAAGCATAGAACGTTCTTCTAGATATGGCAGTAGAGTCATGATGTCAATAATCACAGAAGAGGAGGGGTGGGGTGGTGGATTGGATATCTGCTTTTCTTCTCCATCTTACTATTTCAAATTTGTTCCGTTTTTATTCCTAAGCTTTCAAAAGATCTCTCTTTAGATGTTTTATTTTGGCATCAACTTTACATATTTATTTTAGTTCCTCAACTTCAAAAAATTGACCATTTAATTCTTACCGTTGTTTTATTATGTGAGCATATATTTGCACTGTATAACTTGAAATTAAGTACAAGGACTAAATTTGTGAAATAAGTCTTAGGAACAAAATGATTATATTTAAAAAGTAACGTGATTCATATAGACAAGGAAAGTTGTAGGACAAAATGATTATTTTTAAAAGTGTAGGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGCCCCACAAAAGACGAAGGCAAAGGCAGCGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTGAGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCCATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCCCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCGAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTACGTGAGCTTGGCTAGCTGGCTGCATATGCTTCGTTAATTTCGTTTTGAATTTGATTTATGTTGGTATCATGGTTTGTTCTGTGTATATATGCGCGCAGGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

mRNA sequence

AGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTCTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAATGGGATCATTGTGGACAACGGGTTCTTGAGGGCCCCACAAAAGACGAAGGCAAAGGCAGCGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTGAGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCCATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCCCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCGAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

Coding sequence (CDS)

ATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAATGGGATCATTGTGGACAACGGGTTCTTGAGGGCCCCACAAAAGACGAAGGCAAAGGCAGCGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTGAGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCCATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCCCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCGAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTCCTCCTCTTTAAGGAACCATATTATTGA

Protein sequence

MAFTAISSSMPSSAFVRSILSSQCISTPTTPQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIIVDNGFLRAPQKTKAKAAAAAGVSISSIETKPVVVVELVFLNLASVSFRSLAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY

Homology

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BLAST of Carg06108 vs. NCBI nr
Match: XP_022963850.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata])

HSP 1 Score: 441.0 bits (1133), Expect = 5.1e-120
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 303
           MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 60

Query: 304 PTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 363
           PTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS
Sbjct: 61  PTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 120

Query: 364 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 423
           KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED
Sbjct: 121 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 180

Query: 424 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 181 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

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BLAST of Carg06108 vs. NCBI nr
Match: XP_023521950.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553300.1 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.8 bits (1122), Expect = 9.5e-119
Identity = 236/241 (97.93%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 242 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 301
           +AMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 302 GGPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 361
           GGP PS XXXXXXXXXXXXXXXXLGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPRPSQXXXXXXXXXXXXXXXXLGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 362 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 421
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 422 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 481
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240

Query: 482 Y 483
           Y
Sbjct: 241 Y 241

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BLAST of Carg06108 vs. NCBI nr
Match: XP_022990181.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima])

HSP 1 Score: 429.1 bits (1102), Expect = 2.0e-116
Identity = 220/241 (91.29%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 242 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 301
           +AMASP IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASP-IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 302 GGPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 361
           GGPTPS                 LGPS  DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPTPS----QSRRDQKEQNNNALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 362 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 421
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 422 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 481
           EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 236

Query: 482 Y 483
           Y
Sbjct: 241 Y 236

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BLAST of Carg06108 vs. NCBI nr
Match: XP_008462782.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo])

HSP 1 Score: 368.6 bits (945), Expect = 3.2e-98
Identity = 206/240 (85.83%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 303
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGW  
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGW-- 60

Query: 304 GPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 363
                XXXXXXXXXXXXXXXX LGPSL DLLNNSSDSHYQFLGVGAEA++EEIKSAYRRL
Sbjct: 61  ----XXXXXXXXXXXXXXXXXMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRL 120

Query: 364 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 423
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 180

Query: 424 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           DPYEQELQNW+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

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BLAST of Carg06108 vs. NCBI nr
Match: XP_004137622.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus] >KGN64159.1 hypothetical protein Csa_1G042670 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 190/240 (79.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 303
           MASP  PNSL  ++TFHS A TFRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 304 GPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 363
                                 LGPSL DLLNNSSDSHYQFLGV AEA++EEIKSAYRRL
Sbjct: 61  ------RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYRRL 120

Query: 364 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 423
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+KLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMKLE 180

Query: 424 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           DPYEQELQNW STPDMVDRL GRN++LSDQA+TALTLDI IILFAI CIVYVLLFKEPYY
Sbjct: 181 DPYEQELQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEPYY 234

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BLAST of Carg06108 vs. TAIR10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-70
Identity = 133/216 (61.57%), Postives = 163/216 (75.46%), Query Frame = 0


Query: 267 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSXXXXXXXXXXXXXXXXXLG 326
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG +                     
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGGRSDPAKSVDEDKTNLLS-----D 98

Query: 327 PSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLK 386
               +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL+
Sbjct: 99  EKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLR 158

Query: 387 QVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRN 446
           +VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GRN
Sbjct: 159 EVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRN 218

Query: 447 MDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           M+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 MELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Carg06108 vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 240.0 bits (611), Expect = 3.1e-63
Identity = 123/158 (77.85%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 35  SSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDM 94
           S++SW SSFP +S+  GS  V S+P   K  F+Q+AWTRRSRGEAAKRPN+KSWKQRTDM
Sbjct: 29  SAVSWQSSFPKLSIEIGS--VISSPIVKKDSFVQAAWTRRSRGEAAKRPNRKSWKQRTDM 88

Query: 95  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 154
           YMRPFLLNVFFS+KFIHAKVMHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIA
Sbjct: 89  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 148

Query: 155 ERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGII 193
           ERS EADVYA+SYEPRK ERIEGKLGIVIDTIKE+GII
Sbjct: 149 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGII 184

[Close]

BLAST of Carg06108 vs. TAIR10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-23
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 80  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLP 139
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 140 SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIIV 194
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI V
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229

[Close]

BLAST of Carg06108 vs. TAIR10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-17
Identity = 44/113 (38.94%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 81  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSL 140
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 141 TDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIIV 194
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+  + +NG+ V
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

[Close]

BLAST of Carg06108 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 95  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 154
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 155 ERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGI 192
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of Carg06108 vs. Swiss-Prot
Match: sp|Q9SMS0|NDHT_ARATH (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.6e-69
Identity = 133/216 (61.57%), Postives = 163/216 (75.46%), Query Frame = 0


Query: 267 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSXXXXXXXXXXXXXXXXXLG 326
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG +                     
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGGRSDPAKSVDEDKTNLLS-----D 98

Query: 327 PSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLK 386
               +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL+
Sbjct: 99  EKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLR 158

Query: 387 QVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRN 446
           +VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GRN
Sbjct: 159 EVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRN 218

Query: 447 MDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           M+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 MELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Carg06108 vs. Swiss-Prot
Match: sp|Q75VW3|DNAJ_HYDTT (Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) OX=608538 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 340 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 399
           +YQ LGV  +A  EEIK AYRRL+KEYHPD ++   + AS+KF ++ + Y +LS+EE RK
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 65

Query: 400 FYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTP 437
            YD  L   +     D +   ++D  E   Q  + +P
Sbjct: 66  EYDRILKSGDEKSYRDFMEY-IQDFLESIWQGMRRSP 99

[Close]

BLAST of Carg06108 vs. Swiss-Prot
Match: sp|Q5N0G1|DNAJ_SYNP6 (Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 340 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 399
           +YQ LGV  +AD +EIK AYRRL+++YHPD    P   A DKF ++ + YEVLS  E+R 
Sbjct: 5   YYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEP--GAEDKFKEINRAYEVLSEPETRA 64

Query: 400 FYD 403
            YD
Sbjct: 65  RYD 65

[Close]

BLAST of Carg06108 vs. Swiss-Prot
Match: sp|Q5KWZ8|DNAJ_GEOKA (Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 340 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 399
           +Y+ LGV   A  +EIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 65

Query: 400 FYD 403
            YD
Sbjct: 66  RYD 66

[Close]

BLAST of Carg06108 vs. Swiss-Prot
Match: sp|Q45552|DNAJ_GEOSE (Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 340 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 399
           +Y+ LGV   A  EEIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 400 FYD 403
            YD
Sbjct: 66  HYD 66

[Close]

BLAST of Carg06108 vs. TrEMBL
Match: tr|A0A1S3CHS6|A0A1S3CHS6_CUCME (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.1e-98
Identity = 206/240 (85.83%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 303
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGW  
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGW-- 60

Query: 304 GPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 363
                XXXXXXXXXXXXXXXX LGPSL DLLNNSSDSHYQFLGVGAEA++EEIKSAYRRL
Sbjct: 61  ----XXXXXXXXXXXXXXXXXMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRL 120

Query: 364 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 423
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 180

Query: 424 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           DPYEQELQNW+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Carg06108 vs. TrEMBL
Match: tr|A0A0A0LT25|A0A0A0LT25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.8e-98
Identity = 190/240 (79.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 303
           MASP  PNSL  ++TFHS A TFRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 304 GPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 363
                                 LGPSL DLLNNSSDSHYQFLGV AEA++EEIKSAYRRL
Sbjct: 61  ------RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYRRL 120

Query: 364 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 423
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+KLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMKLE 180

Query: 424 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           DPYEQELQNW STPDMVDRL GRN++LSDQA+TALTLDI IILFAI CIVYVLLFKEPYY
Sbjct: 181 DPYEQELQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEPYY 234

[Close]

BLAST of Carg06108 vs. TrEMBL
Match: tr|A0A1S3B2Q8|A0A1S3B2Q8_CUCME (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.5e-80
Identity = 166/192 (86.46%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPQKSSSLSWASSFPSISLSRGSPFVSSNPA 60
           MAFTAI+SS+PS +   S+ SSQ  STP   QKSSSLSWASSFP +++ RGSPF SSNP 
Sbjct: 1   MAFTAIASSLPSCS---SVFSSQGPSTPL--QKSSSLSWASSFPHVNIFRGSPFASSNPP 60

Query: 61  HAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTS 120
           +AKVLFIQSAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTS
Sbjct: 61  YAKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTS 120

Query: 121 KVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLG 180
           KVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDE+IEGKLG
Sbjct: 121 KVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDEKIEGKLG 180

Query: 181 IVIDTIKENGII 193
           IVIDTIKENGI+
Sbjct: 181 IVIDTIKENGIM 187

[Close]

BLAST of Carg06108 vs. TrEMBL
Match: tr|A0A1U7Z1U5|A0A1U7Z1U5_NELNU (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104589413 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 6.4e-79
Identity = 157/246 (63.82%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 244 MASPSIPNSLFL--------NRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQN 303
           MAS + P +L L        NR+  +  R+ R   V+AS+ P+ R+R PPGVDTRIHW N
Sbjct: 1   MASTAAPPTLSLLFGSRKGGNRSEEAHGRSRRNCRVFASENPDRRKRAPPGVDTRIHWDN 60

Query: 304 DEEGWIGGPTPSXXXXXXXXXXXXXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEI 363
            +EGWIGG T S                 LG   +DLLN SSDSHYQFLGV  +AD+EEI
Sbjct: 61  PDEGWIGGST-SSSQASRRLNVEEEQRNLLGEKFSDLLNTSSDSHYQFLGVAVDADMEEI 120

Query: 364 KSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQAD 423
           K+AYRRLSKEYHPDTTSLP+KAASDKFMKLK+VY++LSNEESR+FYDWTLAQE ASR+A+
Sbjct: 121 KAAYRRLSKEYHPDTTSLPIKAASDKFMKLKEVYDILSNEESRRFYDWTLAQEAASRKAE 180

Query: 424 KLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVL 482
           K+++KLEDPY QE++NW+S PDMVDRL GRNMDLSDQA TALT+D+ II+FAI CI+YVL
Sbjct: 181 KMKMKLEDPYMQEVKNWESVPDMVDRLGGRNMDLSDQAMTALTIDVGIIIFAICCIIYVL 240

[Close]

BLAST of Carg06108 vs. TrEMBL
Match: tr|A0A061EBG7|A0A061EBG7_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_011554 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.6e-77
Identity = 154/224 (68.75%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 263 ARTFRT----WPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSXXXXXXXXXXX 322
           ART RT      V ASQ P+ RQR PPGVDTRIHW N++EGWIGG + S           
Sbjct: 77  ARTRRTNCGSLGVLASQGPSGRQRAPPGVDTRIHWDNEDEGWIGGSSKS-QQTEEKLGAE 136

Query: 323 XXXXXXLGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAA 382
                 LG    DLLN+SSDSHYQFLGV AEADLEE+K+AYRRLSKEYHPDTTSLPLKAA
Sbjct: 137 EQQKNLLGEKFADLLNDSSDSHYQFLGVSAEADLEEVKAAYRRLSKEYHPDTTSLPLKAA 196

Query: 383 SDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDM 442
           S+KFMKL++VY VLS+EESR+FYDWTLAQE ASR+A+KLRI+LEDPY+Q+L+N+K  PDM
Sbjct: 197 SEKFMKLREVYNVLSSEESRRFYDWTLAQEAASRKAEKLRIRLEDPYQQDLRNYKPKPDM 256

Query: 443 VDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 483
           VDRL GRNM+LSDQA TALT D+ +I+FAI CI+YVL+FKEPYY
Sbjct: 257 VDRLGGRNMELSDQAMTALTFDVFVIIFAICCIIYVLVFKEPYY 299

The following BLAST results are available for this feature:

BLAST of Carg06108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963850.1	5.1e-120	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata]	[more]
XP_023521950.1	9.5e-119	97.93	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022990181.1	2.0e-116	91.29	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima]	[more]
XP_008462782.1	3.2e-98	85.83	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo...	[more]
XP_004137622.1	4.2e-98	79.17	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [C...	[more]

BLAST of Carg06108 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09350.1	2.0e-70	61.57	Chaperone DnaJ-domain superfamily protein	[more]
AT3G20230.1	3.1e-63	77.85	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.4e-23	47.83	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	4.4e-17	38.94	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	5.0e-13	35.05	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg06108 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SMS0\|NDHT_ARATH	3.6e-69	61.57	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q75VW3\|DNAJ_HYDTT	1.7e-10	41.24	Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12...	[more]
sp\|Q5N0G1\|DNAJ_SYNP6	2.9e-10	52.38	Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]
sp\|Q5KWZ8\|DNAJ_GEOKA	3.8e-10	50.79	Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=...	[more]
sp\|Q45552\|DNAJ_GEOSE	5.0e-10	50.79	Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV...	[more]

BLAST of Carg06108 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CHS6\|A0A1S3CHS6_CUCME	2.1e-98	85.83	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0LT25\|A0A0A0LT25_CUCSA	2.8e-98	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1	[more]
tr\|A0A1S3B2Q8\|A0A1S3B2Q8_CUCME	1.5e-80	86.46	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1	[more]
tr\|A0A1U7Z1U5\|A0A1U7Z1U5_NELNU	6.4e-79	63.82	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Nelumbo nucifera OX=4...	[more]
tr\|A0A061EBG7\|A0A061EBG7_THECC	1.6e-77	68.75	Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_0115...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018253	DnaJ_domain_CS
IPR036967	Ribosomal_S11_sf
IPR036869	J_dom_sf
IPR005484	Ribosomal_L18
IPR001623	DnaJ_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06108-RA	Carg06108-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 375..395
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..332
None	No IPR available	PANTHER	PTHR45283	FAMILY NOT NAMED	coord: 252..482
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 88..191 e-value: 2.30363E-16 score: 74.1135
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 95..191
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 359..374 score: 43.45 coord: 341..359 score: 48.1 coord: 377..397 score: 35.13
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 338..397 e-value: 2.3E-18 score: 77.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 340..402 e-value: 3.5E-19 score: 68.6
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 339..405 score: 18.03
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 340..394 e-value: 6.77152E-17 score: 74.1189
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 93..191 e-value: 2.0E-8 score: 34.5
IPR036869	Chaperone J-domain superfamily	GENE3D	G3DSA:1.10.287.110		coord: 329..422 e-value: 2.8E-20 score: 74.3
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	SSF46565	Chaperone J-domain	coord: 268..401
IPR036967	Ribosomal protein S11 superfamily	GENE3D	G3DSA:3.30.420.80		coord: 51..196 e-value: 1.4E-14 score: 56.1
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 382..401

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06108	Cla011965	Watermelon (97103) v1	carwmB0026
Carg06108	MELO3C024644	Melon (DHL92) v3.5.1	carmeB0020
Carg06108	MELO3C008070	Melon (DHL92) v3.5.1	carmeB0023
Carg06108	ClCG11G008640	Watermelon (Charleston Gray)	carwcgB0023
Carg06108	CmaCh15G000050	Cucurbita maxima (Rimu)	carcmaB0030
Carg06108	CmoCh04G031570	Cucurbita moschata (Rifu)	carcmoB0033
Carg06108	CmoCh15G000040	Cucurbita moschata (Rifu)	carcmoB0031
Carg06108	Lsi11G010000	Bottle gourd (USVL1VR-Ls)	carlsiB014
Carg06108	Cp4.1LG13g11770	Cucurbita pepo (Zucchini)	carcpeB0031
Carg06108	Cp4.1LG01g26190	Cucurbita pepo (Zucchini)	carcpeB0034
Carg06108	MELO3C024644.2	Melon (DHL92) v3.6.1	carmedB0021
Carg06108	Cla97C11G215000	Watermelon (97103) v2	carwmbB0016
Carg06108	Bhi04G002083	Wax gourd	carwgoB0024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06108	Cucumber (Gy14) v2	carcgybB0017
Carg06108	Cucurbita maxima (Rimu)	carcmaB0026
Carg06108	Cucurbita maxima (Rimu)	carcmaB0033
Carg06108	Cucurbita moschata (Rifu)	carcmoB0027
Carg06108	Wild cucumber (PI 183967)	carcpiB0018
Carg06108	Cucumber (Chinese Long) v2	carcuB0018
Carg06108	Cucumber (Chinese Long) v3	carcucB0018
Carg06108	Bottle gourd (USVL1VR-Ls)	carlsiB022
Carg06108	Melon (DHL92) v3.6.1	carmedB0024
Carg06108	Watermelon (Charleston Gray)	carwcgB0020
Carg06108	Watermelon (97103) v1	carwmB0021
Carg06108	Watermelon (97103) v2	carwmbB0017